Experiment: D-Mannose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS10575 and HMPREF1078_RS10580 overlap by 4 nucleotides HMPREF1078_RS10580 and HMPREF1078_RS10585 are separated by 178 nucleotides
HMPREF1078_RS10575: HMPREF1078_RS10575 - argininosuccinate synthase, at 13,827 to 15,026
_RS10575
HMPREF1078_RS10580: HMPREF1078_RS10580 - N-acetyl-gamma-glutamyl-phosphate reductase, at 15,023 to 15,991
_RS10580
HMPREF1078_RS10585: HMPREF1078_RS10585 - aspartate aminotransferase family protein, at 16,170 to 17,297
_RS10585
Position (kb) 15
16 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 14.052 kb on + strand, within HMPREF1078_RS10575 at 14.054 kb on + strand, within HMPREF1078_RS10575 at 14.071 kb on + strand, within HMPREF1078_RS10575 at 14.084 kb on + strand, within HMPREF1078_RS10575 at 14.085 kb on - strand, within HMPREF1078_RS10575 at 14.085 kb on - strand, within HMPREF1078_RS10575 at 14.115 kb on - strand, within HMPREF1078_RS10575 at 14.115 kb on - strand, within HMPREF1078_RS10575 at 14.142 kb on + strand, within HMPREF1078_RS10575 at 14.302 kb on - strand, within HMPREF1078_RS10575 at 14.346 kb on + strand, within HMPREF1078_RS10575 at 14.353 kb on - strand, within HMPREF1078_RS10575 at 14.353 kb on - strand, within HMPREF1078_RS10575 at 14.359 kb on + strand, within HMPREF1078_RS10575 at 14.359 kb on + strand, within HMPREF1078_RS10575 at 14.360 kb on - strand, within HMPREF1078_RS10575 at 14.360 kb on - strand, within HMPREF1078_RS10575 at 14.515 kb on + strand, within HMPREF1078_RS10575 at 14.569 kb on - strand, within HMPREF1078_RS10575 at 14.569 kb on - strand, within HMPREF1078_RS10575 at 14.600 kb on + strand, within HMPREF1078_RS10575 at 14.600 kb on + strand, within HMPREF1078_RS10575 at 14.600 kb on + strand, within HMPREF1078_RS10575 at 14.600 kb on + strand, within HMPREF1078_RS10575 at 14.627 kb on - strand, within HMPREF1078_RS10575 at 14.688 kb on - strand, within HMPREF1078_RS10575 at 14.710 kb on - strand, within HMPREF1078_RS10575 at 14.736 kb on + strand, within HMPREF1078_RS10575 at 14.828 kb on + strand, within HMPREF1078_RS10575 at 15.023 kb on - strand at 15.041 kb on - strand at 15.059 kb on - strand at 15.059 kb on - strand at 15.124 kb on + strand, within HMPREF1078_RS10580 at 15.125 kb on - strand, within HMPREF1078_RS10580 at 15.190 kb on - strand, within HMPREF1078_RS10580 at 15.277 kb on + strand, within HMPREF1078_RS10580 at 15.354 kb on - strand, within HMPREF1078_RS10580 at 15.401 kb on - strand, within HMPREF1078_RS10580 at 15.401 kb on - strand, within HMPREF1078_RS10580 at 15.401 kb on - strand, within HMPREF1078_RS10580 at 15.489 kb on + strand, within HMPREF1078_RS10580 at 15.490 kb on - strand, within HMPREF1078_RS10580 at 15.563 kb on - strand, within HMPREF1078_RS10580 at 15.575 kb on + strand, within HMPREF1078_RS10580 at 15.621 kb on + strand, within HMPREF1078_RS10580 at 15.649 kb on + strand, within HMPREF1078_RS10580 at 15.650 kb on - strand, within HMPREF1078_RS10580 at 15.761 kb on + strand, within HMPREF1078_RS10580 at 15.761 kb on + strand, within HMPREF1078_RS10580 at 15.762 kb on - strand, within HMPREF1078_RS10580 at 15.762 kb on - strand, within HMPREF1078_RS10580 at 15.762 kb on - strand, within HMPREF1078_RS10580 at 15.823 kb on + strand, within HMPREF1078_RS10580 at 15.824 kb on - strand, within HMPREF1078_RS10580 at 15.842 kb on + strand, within HMPREF1078_RS10580 at 15.843 kb on - strand, within HMPREF1078_RS10580 at 15.885 kb on + strand, within HMPREF1078_RS10580 at 15.886 kb on - strand, within HMPREF1078_RS10580 at 15.961 kb on - strand at 15.999 kb on - strand at 16.043 kb on + strand at 16.044 kb on - strand at 16.115 kb on + strand at 16.169 kb on + strand at 16.187 kb on - strand at 16.187 kb on - strand at 16.187 kb on - strand at 16.187 kb on - strand at 16.188 kb on + strand at 16.234 kb on + strand at 16.234 kb on + strand at 16.234 kb on + strand at 16.269 kb on + strand at 16.269 kb on + strand at 16.310 kb on + strand, within HMPREF1078_RS10585 at 16.311 kb on - strand, within HMPREF1078_RS10585 at 16.314 kb on + strand, within HMPREF1078_RS10585 at 16.318 kb on + strand, within HMPREF1078_RS10585 at 16.318 kb on + strand, within HMPREF1078_RS10585 at 16.318 kb on + strand, within HMPREF1078_RS10585 at 16.326 kb on - strand, within HMPREF1078_RS10585 at 16.349 kb on - strand, within HMPREF1078_RS10585 at 16.356 kb on + strand, within HMPREF1078_RS10585 at 16.356 kb on + strand, within HMPREF1078_RS10585 at 16.547 kb on + strand, within HMPREF1078_RS10585 at 16.547 kb on + strand, within HMPREF1078_RS10585 at 16.547 kb on + strand, within HMPREF1078_RS10585 at 16.548 kb on - strand, within HMPREF1078_RS10585 at 16.620 kb on + strand, within HMPREF1078_RS10585 at 16.621 kb on - strand, within HMPREF1078_RS10585 at 16.621 kb on - strand, within HMPREF1078_RS10585 at 16.686 kb on - strand, within HMPREF1078_RS10585 at 16.731 kb on + strand, within HMPREF1078_RS10585 at 16.770 kb on + strand, within HMPREF1078_RS10585 at 16.771 kb on - strand, within HMPREF1078_RS10585 at 16.842 kb on + strand, within HMPREF1078_RS10585 at 16.939 kb on + strand, within HMPREF1078_RS10585 at 16.940 kb on - strand, within HMPREF1078_RS10585 at 16.941 kb on + strand, within HMPREF1078_RS10585 at 16.942 kb on - strand, within HMPREF1078_RS10585 at 16.979 kb on - strand, within HMPREF1078_RS10585
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mg/mL (C) remove 14,052 + HMPREF1078_RS10575 0.19 -4.2 14,054 + HMPREF1078_RS10575 0.19 -4.9 14,071 + HMPREF1078_RS10575 0.20 -3.0 14,084 + HMPREF1078_RS10575 0.21 -2.6 14,085 - HMPREF1078_RS10575 0.21 -2.8 14,085 - HMPREF1078_RS10575 0.21 -3.1 14,115 - HMPREF1078_RS10575 0.24 -1.7 14,115 - HMPREF1078_RS10575 0.24 -1.3 14,142 + HMPREF1078_RS10575 0.26 -2.3 14,302 - HMPREF1078_RS10575 0.40 -3.9 14,346 + HMPREF1078_RS10575 0.43 -3.4 14,353 - HMPREF1078_RS10575 0.44 -0.0 14,353 - HMPREF1078_RS10575 0.44 -4.4 14,359 + HMPREF1078_RS10575 0.44 -4.1 14,359 + HMPREF1078_RS10575 0.44 -3.0 14,360 - HMPREF1078_RS10575 0.44 -2.9 14,360 - HMPREF1078_RS10575 0.44 -2.7 14,515 + HMPREF1078_RS10575 0.57 -2.6 14,569 - HMPREF1078_RS10575 0.62 -4.7 14,569 - HMPREF1078_RS10575 0.62 -2.4 14,600 + HMPREF1078_RS10575 0.64 -2.8 14,600 + HMPREF1078_RS10575 0.64 -2.3 14,600 + HMPREF1078_RS10575 0.64 -1.6 14,600 + HMPREF1078_RS10575 0.64 -2.5 14,627 - HMPREF1078_RS10575 0.67 -3.3 14,688 - HMPREF1078_RS10575 0.72 -0.9 14,710 - HMPREF1078_RS10575 0.74 -3.4 14,736 + HMPREF1078_RS10575 0.76 -4.1 14,828 + HMPREF1078_RS10575 0.83 -4.1 15,023 - -2.9 15,041 - -4.1 15,059 - -2.4 15,059 - -3.2 15,124 + HMPREF1078_RS10580 0.10 -3.6 15,125 - HMPREF1078_RS10580 0.11 -4.2 15,190 - HMPREF1078_RS10580 0.17 -3.4 15,277 + HMPREF1078_RS10580 0.26 -3.8 15,354 - HMPREF1078_RS10580 0.34 -2.1 15,401 - HMPREF1078_RS10580 0.39 -3.2 15,401 - HMPREF1078_RS10580 0.39 -0.9 15,401 - HMPREF1078_RS10580 0.39 -2.2 15,489 + HMPREF1078_RS10580 0.48 -2.7 15,490 - HMPREF1078_RS10580 0.48 -2.0 15,563 - HMPREF1078_RS10580 0.56 -4.6 15,575 + HMPREF1078_RS10580 0.57 -5.0 15,621 + HMPREF1078_RS10580 0.62 -3.3 15,649 + HMPREF1078_RS10580 0.65 -0.7 15,650 - HMPREF1078_RS10580 0.65 -4.3 15,761 + HMPREF1078_RS10580 0.76 -4.9 15,761 + HMPREF1078_RS10580 0.76 -4.9 15,762 - HMPREF1078_RS10580 0.76 -4.8 15,762 - HMPREF1078_RS10580 0.76 -0.9 15,762 - HMPREF1078_RS10580 0.76 -4.7 15,823 + HMPREF1078_RS10580 0.83 -1.9 15,824 - HMPREF1078_RS10580 0.83 -4.9 15,842 + HMPREF1078_RS10580 0.85 -3.2 15,843 - HMPREF1078_RS10580 0.85 -6.1 15,885 + HMPREF1078_RS10580 0.89 -2.9 15,886 - HMPREF1078_RS10580 0.89 -3.2 15,961 - -2.7 15,999 - -2.1 16,043 + -0.8 16,044 - -1.7 16,115 + +0.8 16,169 + -1.3 16,187 - -2.6 16,187 - -2.9 16,187 - -2.8 16,187 - -1.3 16,188 + -4.0 16,234 + -3.2 16,234 + -5.4 16,234 + -4.7 16,269 + -3.5 16,269 + -1.2 16,310 + HMPREF1078_RS10585 0.12 -2.0 16,311 - HMPREF1078_RS10585 0.12 -1.9 16,314 + HMPREF1078_RS10585 0.13 -4.3 16,318 + HMPREF1078_RS10585 0.13 -3.5 16,318 + HMPREF1078_RS10585 0.13 -0.7 16,318 + HMPREF1078_RS10585 0.13 -4.6 16,326 - HMPREF1078_RS10585 0.14 -1.9 16,349 - HMPREF1078_RS10585 0.16 -3.9 16,356 + HMPREF1078_RS10585 0.16 -2.4 16,356 + HMPREF1078_RS10585 0.16 -3.2 16,547 + HMPREF1078_RS10585 0.33 -1.9 16,547 + HMPREF1078_RS10585 0.33 -3.3 16,547 + HMPREF1078_RS10585 0.33 -3.8 16,548 - HMPREF1078_RS10585 0.34 -3.4 16,620 + HMPREF1078_RS10585 0.40 -2.4 16,621 - HMPREF1078_RS10585 0.40 -3.7 16,621 - HMPREF1078_RS10585 0.40 -1.2 16,686 - HMPREF1078_RS10585 0.46 -2.9 16,731 + HMPREF1078_RS10585 0.50 -3.8 16,770 + HMPREF1078_RS10585 0.53 -5.1 16,771 - HMPREF1078_RS10585 0.53 -1.2 16,842 + HMPREF1078_RS10585 0.60 -3.4 16,939 + HMPREF1078_RS10585 0.68 -2.8 16,940 - HMPREF1078_RS10585 0.68 -3.2 16,941 + HMPREF1078_RS10585 0.68 -2.8 16,942 - HMPREF1078_RS10585 0.68 -4.3 16,979 - HMPREF1078_RS10585 0.72 -2.3
Or see this region's nucleotide sequence