Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS10395

Experiment: D-Mannose 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS10390 and HMPREF1078_RS10395 overlap by 4 nucleotidesHMPREF1078_RS10395 and HMPREF1078_RS10400 are separated by 108 nucleotides HMPREF1078_RS10390: HMPREF1078_RS10390 - cofactor-independent phosphoglycerate mutase, at 711,950 to 713,152 _RS10390 HMPREF1078_RS10395: HMPREF1078_RS10395 - threonine synthase, at 713,149 to 714,462 _RS10395 HMPREF1078_RS10400: HMPREF1078_RS10400 - DUF4434 domain-containing protein, at 714,571 to 715,671 _RS10400 Position (kb) 713 714 715Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 712.203 kb on - strand, within HMPREF1078_RS10390at 712.288 kb on + strand, within HMPREF1078_RS10390at 712.326 kb on + strand, within HMPREF1078_RS10390at 712.353 kb on + strand, within HMPREF1078_RS10390at 712.361 kb on + strand, within HMPREF1078_RS10390at 712.447 kb on - strand, within HMPREF1078_RS10390at 712.605 kb on + strand, within HMPREF1078_RS10390at 712.605 kb on + strand, within HMPREF1078_RS10390at 712.606 kb on - strand, within HMPREF1078_RS10390at 712.658 kb on + strand, within HMPREF1078_RS10390at 712.659 kb on - strand, within HMPREF1078_RS10390at 712.710 kb on + strand, within HMPREF1078_RS10390at 712.735 kb on - strand, within HMPREF1078_RS10390at 712.763 kb on + strand, within HMPREF1078_RS10390at 712.775 kb on + strand, within HMPREF1078_RS10390at 712.775 kb on + strand, within HMPREF1078_RS10390at 712.776 kb on - strand, within HMPREF1078_RS10390at 712.830 kb on - strand, within HMPREF1078_RS10390at 712.875 kb on + strand, within HMPREF1078_RS10390at 712.875 kb on + strand, within HMPREF1078_RS10390at 712.875 kb on + strand, within HMPREF1078_RS10390at 713.008 kb on + strand, within HMPREF1078_RS10390at 713.009 kb on - strand, within HMPREF1078_RS10390at 713.014 kb on + strand, within HMPREF1078_RS10390at 713.015 kb on - strand, within HMPREF1078_RS10390at 713.015 kb on - strand, within HMPREF1078_RS10390at 713.015 kb on - strand, within HMPREF1078_RS10390at 713.038 kb on + strandat 713.038 kb on + strandat 713.042 kb on + strandat 713.042 kb on + strandat 713.116 kb on - strandat 713.116 kb on - strandat 713.116 kb on - strandat 713.116 kb on - strandat 713.119 kb on - strandat 713.156 kb on - strandat 713.159 kb on - strandat 713.234 kb on + strandat 713.235 kb on - strandat 713.235 kb on - strandat 713.236 kb on + strandat 713.236 kb on + strandat 713.237 kb on - strandat 713.237 kb on - strandat 713.238 kb on + strandat 713.238 kb on + strandat 713.238 kb on + strandat 713.239 kb on - strandat 713.239 kb on - strandat 713.239 kb on - strandat 713.239 kb on - strandat 713.239 kb on - strandat 713.239 kb on - strandat 713.250 kb on + strandat 713.250 kb on + strandat 713.251 kb on - strandat 713.348 kb on + strand, within HMPREF1078_RS10395at 713.348 kb on + strand, within HMPREF1078_RS10395at 713.348 kb on + strand, within HMPREF1078_RS10395at 713.349 kb on - strand, within HMPREF1078_RS10395at 713.349 kb on - strand, within HMPREF1078_RS10395at 713.349 kb on - strand, within HMPREF1078_RS10395at 713.349 kb on - strand, within HMPREF1078_RS10395at 713.415 kb on - strand, within HMPREF1078_RS10395at 713.415 kb on - strand, within HMPREF1078_RS10395at 713.425 kb on - strand, within HMPREF1078_RS10395at 713.425 kb on - strand, within HMPREF1078_RS10395at 713.425 kb on - strand, within HMPREF1078_RS10395at 713.429 kb on - strand, within HMPREF1078_RS10395at 713.429 kb on - strand, within HMPREF1078_RS10395at 713.506 kb on + strand, within HMPREF1078_RS10395at 713.506 kb on + strand, within HMPREF1078_RS10395at 713.506 kb on + strand, within HMPREF1078_RS10395at 713.507 kb on - strand, within HMPREF1078_RS10395at 713.515 kb on - strand, within HMPREF1078_RS10395at 713.607 kb on + strand, within HMPREF1078_RS10395at 713.607 kb on + strand, within HMPREF1078_RS10395at 713.617 kb on + strand, within HMPREF1078_RS10395at 713.618 kb on - strand, within HMPREF1078_RS10395at 713.618 kb on - strand, within HMPREF1078_RS10395at 713.618 kb on - strand, within HMPREF1078_RS10395at 713.618 kb on - strand, within HMPREF1078_RS10395at 713.618 kb on - strand, within HMPREF1078_RS10395at 713.618 kb on - strand, within HMPREF1078_RS10395at 713.618 kb on - strand, within HMPREF1078_RS10395at 713.618 kb on - strand, within HMPREF1078_RS10395at 713.642 kb on + strand, within HMPREF1078_RS10395at 713.670 kb on + strand, within HMPREF1078_RS10395at 713.702 kb on + strand, within HMPREF1078_RS10395at 713.748 kb on + strand, within HMPREF1078_RS10395at 713.831 kb on - strand, within HMPREF1078_RS10395at 713.833 kb on + strand, within HMPREF1078_RS10395at 713.834 kb on - strand, within HMPREF1078_RS10395at 713.845 kb on + strand, within HMPREF1078_RS10395at 713.859 kb on + strand, within HMPREF1078_RS10395at 713.885 kb on + strand, within HMPREF1078_RS10395at 713.886 kb on - strand, within HMPREF1078_RS10395at 713.886 kb on - strand, within HMPREF1078_RS10395at 713.886 kb on - strand, within HMPREF1078_RS10395at 713.916 kb on + strand, within HMPREF1078_RS10395at 714.022 kb on + strand, within HMPREF1078_RS10395at 714.106 kb on + strand, within HMPREF1078_RS10395at 714.107 kb on - strand, within HMPREF1078_RS10395at 714.203 kb on - strand, within HMPREF1078_RS10395at 714.218 kb on - strand, within HMPREF1078_RS10395at 714.224 kb on + strand, within HMPREF1078_RS10395at 714.377 kb on + strandat 714.410 kb on + strandat 714.411 kb on - strandat 714.445 kb on + strandat 714.446 kb on - strandat 714.446 kb on - strandat 714.460 kb on + strandat 714.460 kb on + strandat 714.461 kb on - strandat 714.461 kb on - strandat 714.482 kb on - strandat 714.568 kb on + strandat 714.568 kb on + strandat 714.569 kb on - strandat 714.594 kb on + strandat 714.595 kb on - strandat 714.595 kb on - strandat 714.597 kb on - strandat 714.605 kb on + strandat 714.605 kb on + strandat 714.605 kb on + strandat 714.606 kb on - strandat 714.606 kb on - strandat 714.797 kb on + strand, within HMPREF1078_RS10400at 714.797 kb on + strand, within HMPREF1078_RS10400at 714.797 kb on + strand, within HMPREF1078_RS10400at 714.797 kb on + strand, within HMPREF1078_RS10400at 714.797 kb on + strand, within HMPREF1078_RS10400at 714.798 kb on - strand, within HMPREF1078_RS10400at 714.802 kb on - strand, within HMPREF1078_RS10400at 714.848 kb on + strand, within HMPREF1078_RS10400at 715.115 kb on + strand, within HMPREF1078_RS10400at 715.116 kb on - strand, within HMPREF1078_RS10400at 715.134 kb on + strand, within HMPREF1078_RS10400at 715.135 kb on - strand, within HMPREF1078_RS10400at 715.146 kb on - strand, within HMPREF1078_RS10400at 715.146 kb on - strand, within HMPREF1078_RS10400at 715.172 kb on + strand, within HMPREF1078_RS10400at 715.173 kb on - strand, within HMPREF1078_RS10400at 715.232 kb on + strand, within HMPREF1078_RS10400at 715.233 kb on - strand, within HMPREF1078_RS10400at 715.280 kb on + strand, within HMPREF1078_RS10400at 715.280 kb on + strand, within HMPREF1078_RS10400at 715.280 kb on + strand, within HMPREF1078_RS10400at 715.281 kb on - strand, within HMPREF1078_RS10400at 715.308 kb on + strand, within HMPREF1078_RS10400at 715.308 kb on + strand, within HMPREF1078_RS10400at 715.308 kb on + strand, within HMPREF1078_RS10400at 715.308 kb on + strand, within HMPREF1078_RS10400at 715.309 kb on - strand, within HMPREF1078_RS10400at 715.309 kb on - strand, within HMPREF1078_RS10400at 715.309 kb on - strand, within HMPREF1078_RS10400at 715.309 kb on - strand, within HMPREF1078_RS10400at 715.310 kb on + strand, within HMPREF1078_RS10400at 715.311 kb on - strand, within HMPREF1078_RS10400at 715.311 kb on - strand, within HMPREF1078_RS10400at 715.384 kb on + strand, within HMPREF1078_RS10400at 715.410 kb on + strand, within HMPREF1078_RS10400at 715.411 kb on - strand, within HMPREF1078_RS10400at 715.412 kb on + strand, within HMPREF1078_RS10400at 715.412 kb on + strand, within HMPREF1078_RS10400at 715.412 kb on + strand, within HMPREF1078_RS10400

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose 10 mg/mL (C)
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712,203 - HMPREF1078_RS10390 0.21 -2.4
712,288 + HMPREF1078_RS10390 0.28 -1.7
712,326 + HMPREF1078_RS10390 0.31 -4.7
712,353 + HMPREF1078_RS10390 0.33 -1.1
712,361 + HMPREF1078_RS10390 0.34 -1.5
712,447 - HMPREF1078_RS10390 0.41 -4.0
712,605 + HMPREF1078_RS10390 0.54 -1.8
712,605 + HMPREF1078_RS10390 0.54 -1.1
712,606 - HMPREF1078_RS10390 0.55 -3.8
712,658 + HMPREF1078_RS10390 0.59 -4.6
712,659 - HMPREF1078_RS10390 0.59 -3.6
712,710 + HMPREF1078_RS10390 0.63 -4.2
712,735 - HMPREF1078_RS10390 0.65 -2.9
712,763 + HMPREF1078_RS10390 0.68 -3.5
712,775 + HMPREF1078_RS10390 0.69 -3.2
712,775 + HMPREF1078_RS10390 0.69 -3.6
712,776 - HMPREF1078_RS10390 0.69 -0.5
712,830 - HMPREF1078_RS10390 0.73 -3.1
712,875 + HMPREF1078_RS10390 0.77 -2.6
712,875 + HMPREF1078_RS10390 0.77 -3.2
712,875 + HMPREF1078_RS10390 0.77 -2.6
713,008 + HMPREF1078_RS10390 0.88 -3.6
713,009 - HMPREF1078_RS10390 0.88 -3.1
713,014 + HMPREF1078_RS10390 0.88 -4.4
713,015 - HMPREF1078_RS10390 0.89 -4.0
713,015 - HMPREF1078_RS10390 0.89 +0.0
713,015 - HMPREF1078_RS10390 0.89 -1.3
713,038 + -3.3
713,038 + -3.1
713,042 + -2.5
713,042 + -3.5
713,116 - -1.9
713,116 - -4.2
713,116 - -1.3
713,116 - -2.6
713,119 - -2.7
713,156 - -4.2
713,159 - -1.6
713,234 + -2.4
713,235 - -1.6
713,235 - +0.0
713,236 + -3.7
713,236 + -2.6
713,237 - +0.8
713,237 - -1.9
713,238 + -2.5
713,238 + -1.5
713,238 + -2.9
713,239 - -3.1
713,239 - -3.0
713,239 - -3.6
713,239 - -4.1
713,239 - -2.1
713,239 - -3.8
713,250 + -4.2
713,250 + -3.3
713,251 - -1.5
713,348 + HMPREF1078_RS10395 0.15 -1.7
713,348 + HMPREF1078_RS10395 0.15 -5.7
713,348 + HMPREF1078_RS10395 0.15 -3.6
713,349 - HMPREF1078_RS10395 0.15 -2.5
713,349 - HMPREF1078_RS10395 0.15 -5.1
713,349 - HMPREF1078_RS10395 0.15 -2.0
713,349 - HMPREF1078_RS10395 0.15 -3.3
713,415 - HMPREF1078_RS10395 0.20 -1.9
713,415 - HMPREF1078_RS10395 0.20 -4.6
713,425 - HMPREF1078_RS10395 0.21 -2.0
713,425 - HMPREF1078_RS10395 0.21 -3.7
713,425 - HMPREF1078_RS10395 0.21 -3.1
713,429 - HMPREF1078_RS10395 0.21 -2.3
713,429 - HMPREF1078_RS10395 0.21 -2.9
713,506 + HMPREF1078_RS10395 0.27 -2.0
713,506 + HMPREF1078_RS10395 0.27 -3.9
713,506 + HMPREF1078_RS10395 0.27 -1.9
713,507 - HMPREF1078_RS10395 0.27 -1.0
713,515 - HMPREF1078_RS10395 0.28 -2.8
713,607 + HMPREF1078_RS10395 0.35 -1.9
713,607 + HMPREF1078_RS10395 0.35 -4.0
713,617 + HMPREF1078_RS10395 0.36 -3.9
713,618 - HMPREF1078_RS10395 0.36 +1.4
713,618 - HMPREF1078_RS10395 0.36 -4.3
713,618 - HMPREF1078_RS10395 0.36 -1.5
713,618 - HMPREF1078_RS10395 0.36 -3.6
713,618 - HMPREF1078_RS10395 0.36 -0.2
713,618 - HMPREF1078_RS10395 0.36 -0.5
713,618 - HMPREF1078_RS10395 0.36 -1.1
713,618 - HMPREF1078_RS10395 0.36 -3.0
713,642 + HMPREF1078_RS10395 0.38 -4.3
713,670 + HMPREF1078_RS10395 0.40 -3.2
713,702 + HMPREF1078_RS10395 0.42 -4.3
713,748 + HMPREF1078_RS10395 0.46 -2.0
713,831 - HMPREF1078_RS10395 0.52 -0.5
713,833 + HMPREF1078_RS10395 0.52 -3.6
713,834 - HMPREF1078_RS10395 0.52 -2.9
713,845 + HMPREF1078_RS10395 0.53 -3.1
713,859 + HMPREF1078_RS10395 0.54 -4.7
713,885 + HMPREF1078_RS10395 0.56 -4.7
713,886 - HMPREF1078_RS10395 0.56 -3.0
713,886 - HMPREF1078_RS10395 0.56 -3.3
713,886 - HMPREF1078_RS10395 0.56 -2.3
713,916 + HMPREF1078_RS10395 0.58 -3.4
714,022 + HMPREF1078_RS10395 0.66 -1.5
714,106 + HMPREF1078_RS10395 0.73 -4.7
714,107 - HMPREF1078_RS10395 0.73 -1.8
714,203 - HMPREF1078_RS10395 0.80 -4.3
714,218 - HMPREF1078_RS10395 0.81 -3.9
714,224 + HMPREF1078_RS10395 0.82 -3.5
714,377 + -3.9
714,410 + -4.8
714,411 - -2.0
714,445 + -4.1
714,446 - -1.3
714,446 - -2.0
714,460 + -0.5
714,460 + -0.6
714,461 - -1.0
714,461 - -0.0
714,482 - +0.2
714,568 + -1.0
714,568 + +0.7
714,569 - -1.0
714,594 + +0.6
714,595 - -0.4
714,595 - +0.0
714,597 - +1.2
714,605 + +0.3
714,605 + -0.8
714,605 + -0.3
714,606 - -1.7
714,606 - -1.7
714,797 + HMPREF1078_RS10400 0.21 +1.4
714,797 + HMPREF1078_RS10400 0.21 -0.6
714,797 + HMPREF1078_RS10400 0.21 -0.6
714,797 + HMPREF1078_RS10400 0.21 +0.7
714,797 + HMPREF1078_RS10400 0.21 +0.8
714,798 - HMPREF1078_RS10400 0.21 -0.9
714,802 - HMPREF1078_RS10400 0.21 +0.1
714,848 + HMPREF1078_RS10400 0.25 -0.3
715,115 + HMPREF1078_RS10400 0.49 +0.2
715,116 - HMPREF1078_RS10400 0.50 -1.1
715,134 + HMPREF1078_RS10400 0.51 -0.6
715,135 - HMPREF1078_RS10400 0.51 +0.4
715,146 - HMPREF1078_RS10400 0.52 -1.2
715,146 - HMPREF1078_RS10400 0.52 +1.5
715,172 + HMPREF1078_RS10400 0.55 -0.9
715,173 - HMPREF1078_RS10400 0.55 +0.8
715,232 + HMPREF1078_RS10400 0.60 -0.2
715,233 - HMPREF1078_RS10400 0.60 -0.0
715,280 + HMPREF1078_RS10400 0.64 +0.8
715,280 + HMPREF1078_RS10400 0.64 -0.8
715,280 + HMPREF1078_RS10400 0.64 -0.3
715,281 - HMPREF1078_RS10400 0.64 -0.3
715,308 + HMPREF1078_RS10400 0.67 -0.4
715,308 + HMPREF1078_RS10400 0.67 -0.0
715,308 + HMPREF1078_RS10400 0.67 -2.1
715,308 + HMPREF1078_RS10400 0.67 -0.5
715,309 - HMPREF1078_RS10400 0.67 -0.1
715,309 - HMPREF1078_RS10400 0.67 +0.4
715,309 - HMPREF1078_RS10400 0.67 +0.5
715,309 - HMPREF1078_RS10400 0.67 +1.5
715,310 + HMPREF1078_RS10400 0.67 +0.7
715,311 - HMPREF1078_RS10400 0.67 +0.1
715,311 - HMPREF1078_RS10400 0.67 -1.0
715,384 + HMPREF1078_RS10400 0.74 +0.1
715,410 + HMPREF1078_RS10400 0.76 -0.2
715,411 - HMPREF1078_RS10400 0.76 +1.0
715,412 + HMPREF1078_RS10400 0.76 -0.1
715,412 + HMPREF1078_RS10400 0.76 +0.2
715,412 + HMPREF1078_RS10400 0.76 -0.8

Or see this region's nucleotide sequence