Experiment: D-Mannose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS10380 and HMPREF1078_RS10385 are separated by 753 nucleotides HMPREF1078_RS10385 and HMPREF1078_RS10390 are separated by 41 nucleotides
HMPREF1078_RS10380: HMPREF1078_RS10380 - TonB-dependent receptor, at 705,612 to 708,716
_RS10380
HMPREF1078_RS10385: HMPREF1078_RS10385 - bifunctional aspartate kinase/homoserine dehydrogenase I, at 709,470 to 711,908
_RS10385
HMPREF1078_RS10390: HMPREF1078_RS10390 - cofactor-independent phosphoglycerate mutase, at 711,950 to 713,152
_RS10390
Position (kb) 709
710
711
712 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 708.482 kb on + strand at 708.483 kb on - strand at 708.483 kb on - strand at 708.483 kb on - strand at 708.483 kb on - strand at 708.483 kb on - strand at 708.483 kb on - strand at 708.485 kb on - strand at 708.485 kb on - strand at 708.485 kb on - strand at 708.494 kb on - strand at 708.494 kb on - strand at 708.494 kb on - strand at 708.494 kb on - strand at 708.494 kb on - strand at 708.494 kb on - strand at 708.515 kb on + strand at 708.630 kb on + strand at 708.630 kb on + strand at 708.630 kb on + strand at 708.630 kb on + strand at 708.636 kb on - strand at 708.636 kb on - strand at 708.736 kb on + strand at 708.737 kb on - strand at 708.747 kb on - strand at 708.747 kb on - strand at 708.790 kb on + strand at 708.792 kb on + strand at 708.792 kb on + strand at 708.793 kb on - strand at 708.793 kb on - strand at 708.801 kb on + strand at 708.802 kb on - strand at 708.802 kb on - strand at 708.824 kb on + strand at 708.824 kb on + strand at 708.825 kb on - strand at 708.825 kb on - strand at 708.825 kb on - strand at 708.830 kb on + strand at 708.831 kb on - strand at 708.856 kb on - strand at 708.869 kb on - strand at 708.905 kb on - strand at 708.924 kb on + strand at 708.942 kb on - strand at 708.946 kb on + strand at 708.947 kb on - strand at 708.995 kb on + strand at 708.998 kb on - strand at 709.089 kb on + strand at 709.197 kb on + strand at 709.197 kb on + strand at 709.199 kb on + strand at 709.241 kb on + strand at 709.241 kb on + strand at 709.241 kb on + strand at 709.241 kb on + strand at 709.246 kb on + strand at 709.246 kb on + strand at 709.246 kb on + strand at 709.280 kb on + strand at 709.280 kb on + strand at 709.287 kb on + strand at 709.287 kb on + strand at 709.287 kb on + strand at 709.287 kb on + strand at 709.287 kb on + strand at 709.287 kb on + strand at 709.287 kb on + strand at 709.293 kb on + strand at 709.293 kb on + strand at 709.293 kb on + strand at 709.293 kb on + strand at 709.372 kb on + strand at 709.383 kb on + strand at 710.845 kb on - strand, within HMPREF1078_RS10385 at 710.969 kb on - strand, within HMPREF1078_RS10385 at 710.972 kb on + strand, within HMPREF1078_RS10385 at 710.972 kb on + strand, within HMPREF1078_RS10385 at 710.973 kb on - strand, within HMPREF1078_RS10385 at 710.973 kb on - strand, within HMPREF1078_RS10385 at 710.973 kb on - strand, within HMPREF1078_RS10385 at 710.973 kb on - strand, within HMPREF1078_RS10385 at 711.095 kb on + strand, within HMPREF1078_RS10385 at 711.095 kb on + strand, within HMPREF1078_RS10385 at 711.101 kb on + strand, within HMPREF1078_RS10385 at 711.151 kb on - strand, within HMPREF1078_RS10385 at 711.171 kb on - strand, within HMPREF1078_RS10385 at 711.171 kb on - strand, within HMPREF1078_RS10385 at 711.175 kb on + strand, within HMPREF1078_RS10385 at 711.175 kb on + strand, within HMPREF1078_RS10385 at 711.176 kb on - strand, within HMPREF1078_RS10385 at 711.227 kb on + strand, within HMPREF1078_RS10385 at 711.227 kb on + strand, within HMPREF1078_RS10385 at 711.287 kb on - strand, within HMPREF1078_RS10385 at 711.287 kb on - strand, within HMPREF1078_RS10385 at 711.345 kb on - strand, within HMPREF1078_RS10385 at 711.384 kb on + strand, within HMPREF1078_RS10385 at 711.384 kb on + strand, within HMPREF1078_RS10385 at 711.384 kb on + strand, within HMPREF1078_RS10385 at 711.385 kb on - strand, within HMPREF1078_RS10385 at 711.386 kb on + strand, within HMPREF1078_RS10385 at 711.387 kb on - strand, within HMPREF1078_RS10385 at 711.395 kb on + strand, within HMPREF1078_RS10385 at 711.453 kb on + strand, within HMPREF1078_RS10385 at 711.511 kb on + strand, within HMPREF1078_RS10385 at 711.534 kb on + strand, within HMPREF1078_RS10385 at 711.577 kb on + strand, within HMPREF1078_RS10385 at 711.631 kb on + strand, within HMPREF1078_RS10385 at 711.631 kb on + strand, within HMPREF1078_RS10385 at 711.632 kb on - strand, within HMPREF1078_RS10385 at 711.632 kb on - strand, within HMPREF1078_RS10385 at 711.884 kb on + strand at 711.884 kb on + strand at 711.884 kb on + strand at 711.885 kb on - strand at 711.885 kb on - strand at 711.918 kb on - strand at 711.936 kb on - strand at 711.938 kb on + strand at 711.938 kb on + strand at 711.939 kb on - strand at 711.950 kb on - strand at 712.042 kb on + strand at 712.043 kb on + strand at 712.043 kb on + strand at 712.043 kb on + strand at 712.145 kb on + strand, within HMPREF1078_RS10390 at 712.203 kb on - strand, within HMPREF1078_RS10390 at 712.288 kb on + strand, within HMPREF1078_RS10390 at 712.326 kb on + strand, within HMPREF1078_RS10390 at 712.353 kb on + strand, within HMPREF1078_RS10390 at 712.361 kb on + strand, within HMPREF1078_RS10390 at 712.447 kb on - strand, within HMPREF1078_RS10390 at 712.605 kb on + strand, within HMPREF1078_RS10390 at 712.605 kb on + strand, within HMPREF1078_RS10390 at 712.606 kb on - strand, within HMPREF1078_RS10390 at 712.658 kb on + strand, within HMPREF1078_RS10390 at 712.659 kb on - strand, within HMPREF1078_RS10390 at 712.710 kb on + strand, within HMPREF1078_RS10390 at 712.735 kb on - strand, within HMPREF1078_RS10390 at 712.763 kb on + strand, within HMPREF1078_RS10390 at 712.775 kb on + strand, within HMPREF1078_RS10390 at 712.775 kb on + strand, within HMPREF1078_RS10390 at 712.776 kb on - strand, within HMPREF1078_RS10390 at 712.830 kb on - strand, within HMPREF1078_RS10390 at 712.875 kb on + strand, within HMPREF1078_RS10390 at 712.875 kb on + strand, within HMPREF1078_RS10390 at 712.875 kb on + strand, within HMPREF1078_RS10390
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mg/mL (C) remove 708,482 + -1.1 708,483 - +0.5 708,483 - -0.4 708,483 - -0.0 708,483 - -0.6 708,483 - +0.4 708,483 - +0.2 708,485 - -0.8 708,485 - -0.0 708,485 - -0.2 708,494 - -0.3 708,494 - +1.2 708,494 - +0.6 708,494 - -0.1 708,494 - -0.4 708,494 - +2.4 708,515 + -0.8 708,630 + -1.3 708,630 + -1.0 708,630 + -0.2 708,630 + -0.6 708,636 - -1.3 708,636 - -0.7 708,736 + +1.0 708,737 - -0.3 708,747 - +1.3 708,747 - +2.4 708,790 + +0.4 708,792 + +0.6 708,792 + +0.0 708,793 - +1.2 708,793 - -0.7 708,801 + +0.3 708,802 - +1.4 708,802 - +0.0 708,824 + -0.3 708,824 + +1.1 708,825 - +1.8 708,825 - +0.6 708,825 - -0.6 708,830 + +0.3 708,831 - -0.2 708,856 - -1.9 708,869 - +0.0 708,905 - -0.0 708,924 + -1.1 708,942 - -3.1 708,946 + +0.2 708,947 - -0.1 708,995 + -0.6 708,998 - -0.0 709,089 + -2.3 709,197 + -0.0 709,197 + -1.3 709,199 + +0.4 709,241 + -0.8 709,241 + -1.3 709,241 + -1.2 709,241 + -1.4 709,246 + -1.1 709,246 + -1.1 709,246 + -2.6 709,280 + -1.1 709,280 + -1.2 709,287 + -1.9 709,287 + -0.3 709,287 + -0.7 709,287 + -1.0 709,287 + -0.6 709,287 + -0.6 709,287 + -2.2 709,293 + +0.7 709,293 + -1.0 709,293 + -1.2 709,293 + -1.3 709,372 + -0.2 709,383 + -1.5 710,845 - HMPREF1078_RS10385 0.56 -1.7 710,969 - HMPREF1078_RS10385 0.61 -4.1 710,972 + HMPREF1078_RS10385 0.62 -4.5 710,972 + HMPREF1078_RS10385 0.62 -1.6 710,973 - HMPREF1078_RS10385 0.62 -4.2 710,973 - HMPREF1078_RS10385 0.62 -0.3 710,973 - HMPREF1078_RS10385 0.62 -2.8 710,973 - HMPREF1078_RS10385 0.62 -2.0 711,095 + HMPREF1078_RS10385 0.67 -2.1 711,095 + HMPREF1078_RS10385 0.67 -1.8 711,101 + HMPREF1078_RS10385 0.67 -4.2 711,151 - HMPREF1078_RS10385 0.69 -3.8 711,171 - HMPREF1078_RS10385 0.70 -2.2 711,171 - HMPREF1078_RS10385 0.70 -0.5 711,175 + HMPREF1078_RS10385 0.70 -1.0 711,175 + HMPREF1078_RS10385 0.70 -3.9 711,176 - HMPREF1078_RS10385 0.70 -2.3 711,227 + HMPREF1078_RS10385 0.72 -0.8 711,227 + HMPREF1078_RS10385 0.72 -3.4 711,287 - HMPREF1078_RS10385 0.74 -0.6 711,287 - HMPREF1078_RS10385 0.74 -3.6 711,345 - HMPREF1078_RS10385 0.77 -2.3 711,384 + HMPREF1078_RS10385 0.78 -4.6 711,384 + HMPREF1078_RS10385 0.78 -3.3 711,384 + HMPREF1078_RS10385 0.78 -2.9 711,385 - HMPREF1078_RS10385 0.79 -1.1 711,386 + HMPREF1078_RS10385 0.79 -3.6 711,387 - HMPREF1078_RS10385 0.79 -4.8 711,395 + HMPREF1078_RS10385 0.79 -4.0 711,453 + HMPREF1078_RS10385 0.81 -1.7 711,511 + HMPREF1078_RS10385 0.84 +1.8 711,534 + HMPREF1078_RS10385 0.85 -4.8 711,577 + HMPREF1078_RS10385 0.86 -1.9 711,631 + HMPREF1078_RS10385 0.89 -3.4 711,631 + HMPREF1078_RS10385 0.89 -0.2 711,632 - HMPREF1078_RS10385 0.89 -3.5 711,632 - HMPREF1078_RS10385 0.89 -4.0 711,884 + -1.2 711,884 + +0.5 711,884 + +0.1 711,885 - -3.3 711,885 - -4.0 711,918 - -4.4 711,936 - -6.0 711,938 + -0.7 711,938 + -0.7 711,939 - -1.7 711,950 - -1.8 712,042 + -5.5 712,043 + -4.4 712,043 + -3.9 712,043 + -1.2 712,145 + HMPREF1078_RS10390 0.16 -3.5 712,203 - HMPREF1078_RS10390 0.21 -2.4 712,288 + HMPREF1078_RS10390 0.28 -1.7 712,326 + HMPREF1078_RS10390 0.31 -4.7 712,353 + HMPREF1078_RS10390 0.33 -1.1 712,361 + HMPREF1078_RS10390 0.34 -1.5 712,447 - HMPREF1078_RS10390 0.41 -4.0 712,605 + HMPREF1078_RS10390 0.54 -1.8 712,605 + HMPREF1078_RS10390 0.54 -1.1 712,606 - HMPREF1078_RS10390 0.55 -3.8 712,658 + HMPREF1078_RS10390 0.59 -4.6 712,659 - HMPREF1078_RS10390 0.59 -3.6 712,710 + HMPREF1078_RS10390 0.63 -4.2 712,735 - HMPREF1078_RS10390 0.65 -2.9 712,763 + HMPREF1078_RS10390 0.68 -3.5 712,775 + HMPREF1078_RS10390 0.69 -3.2 712,775 + HMPREF1078_RS10390 0.69 -3.6 712,776 - HMPREF1078_RS10390 0.69 -0.5 712,830 - HMPREF1078_RS10390 0.73 -3.1 712,875 + HMPREF1078_RS10390 0.77 -2.6 712,875 + HMPREF1078_RS10390 0.77 -3.2 712,875 + HMPREF1078_RS10390 0.77 -2.6
Or see this region's nucleotide sequence