Experiment: D-Mannose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS10270 and HMPREF1078_RS10275 are separated by 83 nucleotides HMPREF1078_RS10275 and HMPREF1078_RS10280 are separated by 83 nucleotides HMPREF1078_RS10280 and HMPREF1078_RS10285 are separated by 63 nucleotides HMPREF1078_RS10285 and HMPREF1078_RS10290 are separated by 253 nucleotides
HMPREF1078_RS10270: HMPREF1078_RS10270 - MotA/TolQ/ExbB proton channel family protein, at 681,825 to 682,535
_RS10270
HMPREF1078_RS10275: HMPREF1078_RS10275 - biopolymer transporter ExbD, at 682,619 to 683,029
_RS10275
HMPREF1078_RS10280: HMPREF1078_RS10280 - energy transducer TonB, at 683,113 to 683,967
_RS10280
HMPREF1078_RS10285: HMPREF1078_RS10285 - DJ-1/PfpI family protein, at 684,031 to 684,576
_RS10285
HMPREF1078_RS10290: HMPREF1078_RS10290 - DMT family transporter, at 684,830 to 685,771
_RS10290
Position (kb) 683
684 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 682.154 kb on + strand, within HMPREF1078_RS10270 at 682.155 kb on - strand, within HMPREF1078_RS10270 at 682.291 kb on + strand, within HMPREF1078_RS10270 at 682.292 kb on - strand, within HMPREF1078_RS10270 at 682.295 kb on + strand, within HMPREF1078_RS10270 at 682.335 kb on - strand, within HMPREF1078_RS10270 at 682.351 kb on + strand, within HMPREF1078_RS10270 at 682.357 kb on + strand, within HMPREF1078_RS10270 at 682.358 kb on - strand, within HMPREF1078_RS10270 at 682.358 kb on - strand, within HMPREF1078_RS10270 at 682.376 kb on + strand, within HMPREF1078_RS10270 at 682.446 kb on + strand, within HMPREF1078_RS10270 at 682.446 kb on + strand, within HMPREF1078_RS10270 at 682.447 kb on - strand, within HMPREF1078_RS10270 at 682.505 kb on + strand at 682.514 kb on - strand at 682.563 kb on - strand at 682.576 kb on + strand at 682.577 kb on - strand at 682.577 kb on - strand at 682.577 kb on - strand at 682.577 kb on - strand at 682.584 kb on + strand at 682.584 kb on + strand at 682.585 kb on - strand at 682.585 kb on - strand at 682.598 kb on + strand at 682.605 kb on + strand at 682.684 kb on - strand, within HMPREF1078_RS10275 at 682.706 kb on - strand, within HMPREF1078_RS10275 at 682.712 kb on - strand, within HMPREF1078_RS10275 at 682.896 kb on - strand, within HMPREF1078_RS10275 at 682.896 kb on - strand, within HMPREF1078_RS10275 at 682.920 kb on + strand, within HMPREF1078_RS10275 at 682.952 kb on - strand, within HMPREF1078_RS10275 at 683.052 kb on + strand at 683.093 kb on + strand at 683.107 kb on + strand at 683.135 kb on + strand at 683.135 kb on + strand at 683.135 kb on + strand at 683.136 kb on - strand at 683.136 kb on - strand at 683.136 kb on - strand at 683.137 kb on + strand at 683.137 kb on + strand at 683.137 kb on + strand at 683.137 kb on + strand at 683.138 kb on - strand at 683.138 kb on - strand at 683.138 kb on - strand at 683.138 kb on - strand at 683.232 kb on + strand, within HMPREF1078_RS10280 at 683.234 kb on + strand, within HMPREF1078_RS10280 at 683.255 kb on + strand, within HMPREF1078_RS10280 at 683.289 kb on + strand, within HMPREF1078_RS10280 at 683.695 kb on + strand, within HMPREF1078_RS10280 at 683.742 kb on - strand, within HMPREF1078_RS10280 at 683.784 kb on - strand, within HMPREF1078_RS10280 at 683.793 kb on + strand, within HMPREF1078_RS10280 at 683.937 kb on + strand at 683.944 kb on - strand at 683.947 kb on + strand at 683.947 kb on + strand at 683.954 kb on - strand at 683.956 kb on - strand at 683.966 kb on - strand at 683.977 kb on + strand at 683.978 kb on - strand at 683.990 kb on + strand at 684.011 kb on + strand at 684.011 kb on + strand at 684.047 kb on + strand at 684.054 kb on - strand at 684.096 kb on + strand, within HMPREF1078_RS10285 at 684.124 kb on - strand, within HMPREF1078_RS10285 at 684.326 kb on + strand, within HMPREF1078_RS10285 at 684.326 kb on + strand, within HMPREF1078_RS10285 at 684.348 kb on + strand, within HMPREF1078_RS10285 at 684.349 kb on - strand, within HMPREF1078_RS10285 at 684.353 kb on + strand, within HMPREF1078_RS10285 at 684.354 kb on - strand, within HMPREF1078_RS10285 at 684.470 kb on + strand, within HMPREF1078_RS10285 at 684.492 kb on - strand, within HMPREF1078_RS10285 at 684.599 kb on + strand at 684.674 kb on + strand at 684.674 kb on + strand at 684.691 kb on - strand at 684.708 kb on + strand at 684.709 kb on - strand at 684.728 kb on + strand at 684.728 kb on + strand at 684.728 kb on + strand at 684.731 kb on - strand at 684.744 kb on - strand at 684.744 kb on - strand at 684.745 kb on + strand at 684.746 kb on - strand at 684.819 kb on + strand at 684.836 kb on - strand at 684.836 kb on - strand at 684.840 kb on + strand at 684.860 kb on - strand at 684.860 kb on - strand at 684.860 kb on - strand at 684.898 kb on + strand at 684.899 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mg/mL (C) remove 682,154 + HMPREF1078_RS10270 0.46 +0.0 682,155 - HMPREF1078_RS10270 0.46 -2.3 682,291 + HMPREF1078_RS10270 0.66 -0.8 682,292 - HMPREF1078_RS10270 0.66 -2.0 682,295 + HMPREF1078_RS10270 0.66 -0.5 682,335 - HMPREF1078_RS10270 0.72 -1.6 682,351 + HMPREF1078_RS10270 0.74 -0.8 682,357 + HMPREF1078_RS10270 0.75 -1.1 682,358 - HMPREF1078_RS10270 0.75 -1.9 682,358 - HMPREF1078_RS10270 0.75 -2.4 682,376 + HMPREF1078_RS10270 0.77 -1.5 682,446 + HMPREF1078_RS10270 0.87 -1.2 682,446 + HMPREF1078_RS10270 0.87 -0.2 682,447 - HMPREF1078_RS10270 0.87 +0.0 682,505 + -1.0 682,514 - +0.8 682,563 - -1.3 682,576 + -0.0 682,577 - +0.0 682,577 - -1.0 682,577 - -0.6 682,577 - -2.3 682,584 + -0.5 682,584 + -0.2 682,585 - -1.2 682,585 - -0.7 682,598 + -0.9 682,605 + -1.2 682,684 - HMPREF1078_RS10275 0.16 -2.3 682,706 - HMPREF1078_RS10275 0.21 -1.7 682,712 - HMPREF1078_RS10275 0.23 -2.0 682,896 - HMPREF1078_RS10275 0.67 -1.0 682,896 - HMPREF1078_RS10275 0.67 -0.6 682,920 + HMPREF1078_RS10275 0.73 -0.5 682,952 - HMPREF1078_RS10275 0.81 -1.2 683,052 + +0.0 683,093 + +0.2 683,107 + -1.3 683,135 + -0.5 683,135 + -1.1 683,135 + -2.6 683,136 - -1.7 683,136 - -1.5 683,136 - -0.2 683,137 + -1.3 683,137 + -1.3 683,137 + -0.8 683,137 + -0.5 683,138 - -0.8 683,138 - -2.8 683,138 - -2.3 683,138 - -2.9 683,232 + HMPREF1078_RS10280 0.14 -4.1 683,234 + HMPREF1078_RS10280 0.14 -1.6 683,255 + HMPREF1078_RS10280 0.17 +1.1 683,289 + HMPREF1078_RS10280 0.21 -1.1 683,695 + HMPREF1078_RS10280 0.68 -1.3 683,742 - HMPREF1078_RS10280 0.74 -1.8 683,784 - HMPREF1078_RS10280 0.78 -0.8 683,793 + HMPREF1078_RS10280 0.80 -1.8 683,937 + -2.6 683,944 - -2.3 683,947 + -1.2 683,947 + +1.4 683,954 - -2.7 683,956 - -1.4 683,966 - +1.7 683,977 + -1.5 683,978 - -0.0 683,990 + -0.2 684,011 + -1.3 684,011 + -0.7 684,047 + -0.3 684,054 - +1.1 684,096 + HMPREF1078_RS10285 0.12 -0.2 684,124 - HMPREF1078_RS10285 0.17 +0.8 684,326 + HMPREF1078_RS10285 0.54 +0.4 684,326 + HMPREF1078_RS10285 0.54 -1.1 684,348 + HMPREF1078_RS10285 0.58 -1.2 684,349 - HMPREF1078_RS10285 0.58 +1.6 684,353 + HMPREF1078_RS10285 0.59 +0.3 684,354 - HMPREF1078_RS10285 0.59 -0.2 684,470 + HMPREF1078_RS10285 0.80 +0.4 684,492 - HMPREF1078_RS10285 0.84 +0.9 684,599 + +0.9 684,674 + -1.0 684,674 + -1.2 684,691 - +0.1 684,708 + +0.7 684,709 - +0.6 684,728 + -0.3 684,728 + +0.5 684,728 + -1.8 684,731 - -0.3 684,744 - +0.9 684,744 - -0.1 684,745 + -0.1 684,746 - -0.1 684,819 + -0.5 684,836 - -0.4 684,836 - -1.7 684,840 + +0.2 684,860 - -1.2 684,860 - -2.5 684,860 - -1.2 684,898 + -0.2 684,899 - +1.2
Or see this region's nucleotide sequence