Experiment: D-Mannose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS08675 and HMPREF1078_RS08680 are separated by 7 nucleotides HMPREF1078_RS08680 and HMPREF1078_RS08685 are separated by 25 nucleotides
HMPREF1078_RS08675: HMPREF1078_RS08675 - GRP family sugar transporter, at 318,026 to 319,027
_RS08675
HMPREF1078_RS08680: HMPREF1078_RS08680 - nucleoside hydrolase, at 319,035 to 320,051
_RS08680
HMPREF1078_RS08685: HMPREF1078_RS08685 - ribokinase, at 320,077 to 321,006
_RS08685
Position (kb) 319
320
321 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 318.039 kb on + strand at 318.039 kb on + strand at 318.156 kb on - strand, within HMPREF1078_RS08675 at 318.183 kb on + strand, within HMPREF1078_RS08675 at 318.224 kb on - strand, within HMPREF1078_RS08675 at 318.258 kb on - strand, within HMPREF1078_RS08675 at 318.261 kb on - strand, within HMPREF1078_RS08675 at 318.262 kb on + strand, within HMPREF1078_RS08675 at 318.262 kb on + strand, within HMPREF1078_RS08675 at 318.263 kb on - strand, within HMPREF1078_RS08675 at 318.284 kb on - strand, within HMPREF1078_RS08675 at 318.284 kb on - strand, within HMPREF1078_RS08675 at 318.307 kb on + strand, within HMPREF1078_RS08675 at 318.350 kb on - strand, within HMPREF1078_RS08675 at 318.365 kb on - strand, within HMPREF1078_RS08675 at 318.403 kb on + strand, within HMPREF1078_RS08675 at 318.405 kb on + strand, within HMPREF1078_RS08675 at 318.406 kb on - strand, within HMPREF1078_RS08675 at 318.559 kb on + strand, within HMPREF1078_RS08675 at 318.603 kb on - strand, within HMPREF1078_RS08675 at 318.616 kb on + strand, within HMPREF1078_RS08675 at 318.618 kb on + strand, within HMPREF1078_RS08675 at 318.649 kb on - strand, within HMPREF1078_RS08675 at 318.737 kb on + strand, within HMPREF1078_RS08675 at 318.797 kb on - strand, within HMPREF1078_RS08675 at 318.797 kb on - strand, within HMPREF1078_RS08675 at 318.857 kb on - strand, within HMPREF1078_RS08675 at 318.897 kb on + strand, within HMPREF1078_RS08675 at 318.898 kb on - strand, within HMPREF1078_RS08675 at 319.009 kb on - strand at 319.019 kb on + strand at 319.021 kb on + strand at 319.021 kb on + strand at 319.061 kb on + strand at 319.125 kb on - strand at 319.149 kb on - strand, within HMPREF1078_RS08680 at 319.199 kb on - strand, within HMPREF1078_RS08680 at 319.210 kb on + strand, within HMPREF1078_RS08680 at 319.210 kb on + strand, within HMPREF1078_RS08680 at 319.211 kb on - strand, within HMPREF1078_RS08680 at 319.238 kb on + strand, within HMPREF1078_RS08680 at 319.291 kb on + strand, within HMPREF1078_RS08680 at 319.291 kb on - strand, within HMPREF1078_RS08680 at 319.292 kb on - strand, within HMPREF1078_RS08680 at 319.530 kb on - strand, within HMPREF1078_RS08680 at 319.531 kb on + strand, within HMPREF1078_RS08680 at 319.531 kb on + strand, within HMPREF1078_RS08680 at 319.532 kb on - strand, within HMPREF1078_RS08680 at 319.532 kb on - strand, within HMPREF1078_RS08680 at 319.554 kb on + strand, within HMPREF1078_RS08680 at 319.554 kb on + strand, within HMPREF1078_RS08680 at 319.554 kb on + strand, within HMPREF1078_RS08680 at 319.555 kb on - strand, within HMPREF1078_RS08680 at 319.555 kb on - strand, within HMPREF1078_RS08680 at 319.586 kb on + strand, within HMPREF1078_RS08680 at 319.713 kb on - strand, within HMPREF1078_RS08680 at 319.719 kb on - strand, within HMPREF1078_RS08680 at 319.719 kb on - strand, within HMPREF1078_RS08680 at 319.719 kb on - strand, within HMPREF1078_RS08680 at 319.790 kb on - strand, within HMPREF1078_RS08680 at 319.790 kb on - strand, within HMPREF1078_RS08680 at 319.806 kb on + strand, within HMPREF1078_RS08680 at 319.806 kb on + strand, within HMPREF1078_RS08680 at 319.806 kb on + strand, within HMPREF1078_RS08680 at 319.807 kb on - strand, within HMPREF1078_RS08680 at 319.807 kb on - strand, within HMPREF1078_RS08680 at 319.815 kb on + strand, within HMPREF1078_RS08680 at 319.984 kb on - strand at 320.031 kb on - strand at 320.066 kb on - strand at 320.128 kb on + strand at 320.129 kb on - strand at 320.157 kb on + strand at 320.223 kb on + strand, within HMPREF1078_RS08685 at 320.228 kb on - strand, within HMPREF1078_RS08685 at 320.304 kb on + strand, within HMPREF1078_RS08685 at 320.304 kb on + strand, within HMPREF1078_RS08685 at 320.328 kb on + strand, within HMPREF1078_RS08685 at 320.329 kb on - strand, within HMPREF1078_RS08685 at 320.331 kb on + strand, within HMPREF1078_RS08685 at 320.331 kb on + strand, within HMPREF1078_RS08685 at 320.331 kb on + strand, within HMPREF1078_RS08685 at 320.334 kb on + strand, within HMPREF1078_RS08685 at 320.334 kb on + strand, within HMPREF1078_RS08685 at 320.334 kb on + strand, within HMPREF1078_RS08685 at 320.334 kb on + strand, within HMPREF1078_RS08685 at 320.334 kb on + strand, within HMPREF1078_RS08685 at 320.335 kb on - strand, within HMPREF1078_RS08685 at 320.335 kb on - strand, within HMPREF1078_RS08685 at 320.389 kb on - strand, within HMPREF1078_RS08685 at 320.450 kb on + strand, within HMPREF1078_RS08685 at 320.453 kb on - strand, within HMPREF1078_RS08685 at 320.621 kb on - strand, within HMPREF1078_RS08685 at 320.738 kb on + strand, within HMPREF1078_RS08685 at 320.745 kb on + strand, within HMPREF1078_RS08685 at 320.745 kb on + strand, within HMPREF1078_RS08685 at 320.815 kb on - strand, within HMPREF1078_RS08685 at 320.939 kb on - strand at 320.953 kb on - strand at 321.007 kb on - strand at 321.007 kb on - strand at 321.018 kb on + strand at 321.018 kb on + strand at 321.022 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mg/mL (C) remove 318,039 + +0.0 318,039 + -2.4 318,156 - HMPREF1078_RS08675 0.13 -0.1 318,183 + HMPREF1078_RS08675 0.16 -1.6 318,224 - HMPREF1078_RS08675 0.20 +0.2 318,258 - HMPREF1078_RS08675 0.23 -3.4 318,261 - HMPREF1078_RS08675 0.23 -0.5 318,262 + HMPREF1078_RS08675 0.24 -1.2 318,262 + HMPREF1078_RS08675 0.24 +0.8 318,263 - HMPREF1078_RS08675 0.24 -0.6 318,284 - HMPREF1078_RS08675 0.26 -0.2 318,284 - HMPREF1078_RS08675 0.26 -1.3 318,307 + HMPREF1078_RS08675 0.28 -2.0 318,350 - HMPREF1078_RS08675 0.32 +0.2 318,365 - HMPREF1078_RS08675 0.34 +0.3 318,403 + HMPREF1078_RS08675 0.38 +0.0 318,405 + HMPREF1078_RS08675 0.38 -0.4 318,406 - HMPREF1078_RS08675 0.38 -0.9 318,559 + HMPREF1078_RS08675 0.53 -1.4 318,603 - HMPREF1078_RS08675 0.58 -0.8 318,616 + HMPREF1078_RS08675 0.59 +0.1 318,618 + HMPREF1078_RS08675 0.59 -2.7 318,649 - HMPREF1078_RS08675 0.62 +0.2 318,737 + HMPREF1078_RS08675 0.71 +0.2 318,797 - HMPREF1078_RS08675 0.77 -0.3 318,797 - HMPREF1078_RS08675 0.77 -0.4 318,857 - HMPREF1078_RS08675 0.83 -2.1 318,897 + HMPREF1078_RS08675 0.87 +0.1 318,898 - HMPREF1078_RS08675 0.87 -1.8 319,009 - -1.3 319,019 + +1.8 319,021 + +0.7 319,021 + -1.3 319,061 + -1.0 319,125 - +0.6 319,149 - HMPREF1078_RS08680 0.11 -1.4 319,199 - HMPREF1078_RS08680 0.16 +0.7 319,210 + HMPREF1078_RS08680 0.17 +1.5 319,210 + HMPREF1078_RS08680 0.17 -0.4 319,211 - HMPREF1078_RS08680 0.17 -0.1 319,238 + HMPREF1078_RS08680 0.20 -1.6 319,291 + HMPREF1078_RS08680 0.25 -0.3 319,291 - HMPREF1078_RS08680 0.25 -0.3 319,292 - HMPREF1078_RS08680 0.25 +0.4 319,530 - HMPREF1078_RS08680 0.49 -2.1 319,531 + HMPREF1078_RS08680 0.49 -0.4 319,531 + HMPREF1078_RS08680 0.49 -0.7 319,532 - HMPREF1078_RS08680 0.49 +1.2 319,532 - HMPREF1078_RS08680 0.49 +0.2 319,554 + HMPREF1078_RS08680 0.51 -1.8 319,554 + HMPREF1078_RS08680 0.51 +0.3 319,554 + HMPREF1078_RS08680 0.51 -0.2 319,555 - HMPREF1078_RS08680 0.51 -2.1 319,555 - HMPREF1078_RS08680 0.51 -0.7 319,586 + HMPREF1078_RS08680 0.54 +0.7 319,713 - HMPREF1078_RS08680 0.67 +0.3 319,719 - HMPREF1078_RS08680 0.67 +0.2 319,719 - HMPREF1078_RS08680 0.67 +2.1 319,719 - HMPREF1078_RS08680 0.67 -3.0 319,790 - HMPREF1078_RS08680 0.74 +0.6 319,790 - HMPREF1078_RS08680 0.74 -1.3 319,806 + HMPREF1078_RS08680 0.76 -0.8 319,806 + HMPREF1078_RS08680 0.76 -1.7 319,806 + HMPREF1078_RS08680 0.76 -0.2 319,807 - HMPREF1078_RS08680 0.76 -0.6 319,807 - HMPREF1078_RS08680 0.76 -0.8 319,815 + HMPREF1078_RS08680 0.77 -2.3 319,984 - -0.7 320,031 - +0.4 320,066 - -1.1 320,128 + +1.1 320,129 - +0.1 320,157 + -0.4 320,223 + HMPREF1078_RS08685 0.16 +0.7 320,228 - HMPREF1078_RS08685 0.16 -0.5 320,304 + HMPREF1078_RS08685 0.24 -0.1 320,304 + HMPREF1078_RS08685 0.24 -0.2 320,328 + HMPREF1078_RS08685 0.27 +0.1 320,329 - HMPREF1078_RS08685 0.27 -1.4 320,331 + HMPREF1078_RS08685 0.27 -1.3 320,331 + HMPREF1078_RS08685 0.27 +0.7 320,331 + HMPREF1078_RS08685 0.27 +0.2 320,334 + HMPREF1078_RS08685 0.28 +0.5 320,334 + HMPREF1078_RS08685 0.28 -1.1 320,334 + HMPREF1078_RS08685 0.28 +0.7 320,334 + HMPREF1078_RS08685 0.28 -0.1 320,334 + HMPREF1078_RS08685 0.28 +0.2 320,335 - HMPREF1078_RS08685 0.28 +0.2 320,335 - HMPREF1078_RS08685 0.28 -0.1 320,389 - HMPREF1078_RS08685 0.34 -0.0 320,450 + HMPREF1078_RS08685 0.40 +0.1 320,453 - HMPREF1078_RS08685 0.40 -2.1 320,621 - HMPREF1078_RS08685 0.58 +0.4 320,738 + HMPREF1078_RS08685 0.71 +0.4 320,745 + HMPREF1078_RS08685 0.72 -0.7 320,745 + HMPREF1078_RS08685 0.72 -2.4 320,815 - HMPREF1078_RS08685 0.79 -0.2 320,939 - +0.4 320,953 - +0.8 321,007 - +1.2 321,007 - -0.2 321,018 + -0.7 321,018 + +0.7 321,022 - -2.2
Or see this region's nucleotide sequence