Experiment: D-Mannose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS07880 and HMPREF1078_RS07885 are separated by 125 nucleotides HMPREF1078_RS07885 and HMPREF1078_RS07890 are separated by 92 nucleotides
HMPREF1078_RS07880: HMPREF1078_RS07880 - MATE family efflux transporter, at 131,822 to 133,144
_RS07880
HMPREF1078_RS07885: HMPREF1078_RS07885 - hypothetical protein, at 133,270 to 134,268
_RS07885
HMPREF1078_RS07890: HMPREF1078_RS07890 - ABC-F family ATP-binding cassette domain-containing protein, at 134,361 to 135,977
_RS07890
Position (kb) 133
134
135 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 132.443 kb on + strand, within HMPREF1078_RS07880 at 132.443 kb on + strand, within HMPREF1078_RS07880 at 132.493 kb on - strand, within HMPREF1078_RS07880 at 132.499 kb on + strand, within HMPREF1078_RS07880 at 132.500 kb on - strand, within HMPREF1078_RS07880 at 132.502 kb on - strand, within HMPREF1078_RS07880 at 132.502 kb on - strand, within HMPREF1078_RS07880 at 132.520 kb on + strand, within HMPREF1078_RS07880 at 132.520 kb on + strand, within HMPREF1078_RS07880 at 132.522 kb on + strand, within HMPREF1078_RS07880 at 132.523 kb on - strand, within HMPREF1078_RS07880 at 132.628 kb on - strand, within HMPREF1078_RS07880 at 132.638 kb on + strand, within HMPREF1078_RS07880 at 132.638 kb on + strand, within HMPREF1078_RS07880 at 132.638 kb on + strand, within HMPREF1078_RS07880 at 132.639 kb on - strand, within HMPREF1078_RS07880 at 132.647 kb on + strand, within HMPREF1078_RS07880 at 132.648 kb on - strand, within HMPREF1078_RS07880 at 132.691 kb on + strand, within HMPREF1078_RS07880 at 132.703 kb on - strand, within HMPREF1078_RS07880 at 132.747 kb on + strand, within HMPREF1078_RS07880 at 132.748 kb on - strand, within HMPREF1078_RS07880 at 132.765 kb on + strand, within HMPREF1078_RS07880 at 132.765 kb on + strand, within HMPREF1078_RS07880 at 132.783 kb on + strand, within HMPREF1078_RS07880 at 132.784 kb on - strand, within HMPREF1078_RS07880 at 132.913 kb on - strand, within HMPREF1078_RS07880 at 132.913 kb on - strand, within HMPREF1078_RS07880 at 132.938 kb on + strand, within HMPREF1078_RS07880 at 132.938 kb on + strand, within HMPREF1078_RS07880 at 132.956 kb on + strand, within HMPREF1078_RS07880 at 132.958 kb on + strand, within HMPREF1078_RS07880 at 132.981 kb on + strand, within HMPREF1078_RS07880 at 132.981 kb on + strand, within HMPREF1078_RS07880 at 132.982 kb on - strand, within HMPREF1078_RS07880 at 132.982 kb on - strand, within HMPREF1078_RS07880 at 132.993 kb on + strand, within HMPREF1078_RS07880 at 132.993 kb on + strand, within HMPREF1078_RS07880 at 132.996 kb on + strand, within HMPREF1078_RS07880 at 133.088 kb on + strand at 133.089 kb on - strand at 133.113 kb on - strand at 133.113 kb on - strand at 133.136 kb on - strand at 133.173 kb on - strand at 133.178 kb on + strand at 133.235 kb on + strand at 133.248 kb on - strand at 133.283 kb on + strand at 133.292 kb on + strand at 133.293 kb on - strand at 133.323 kb on + strand at 133.475 kb on + strand, within HMPREF1078_RS07885 at 133.488 kb on + strand, within HMPREF1078_RS07885 at 133.493 kb on + strand, within HMPREF1078_RS07885 at 133.493 kb on + strand, within HMPREF1078_RS07885 at 133.493 kb on + strand, within HMPREF1078_RS07885 at 133.543 kb on + strand, within HMPREF1078_RS07885 at 133.543 kb on + strand, within HMPREF1078_RS07885 at 133.546 kb on + strand, within HMPREF1078_RS07885 at 133.547 kb on - strand, within HMPREF1078_RS07885 at 133.547 kb on - strand, within HMPREF1078_RS07885 at 133.572 kb on - strand, within HMPREF1078_RS07885 at 133.573 kb on + strand, within HMPREF1078_RS07885 at 133.573 kb on + strand, within HMPREF1078_RS07885 at 133.573 kb on + strand, within HMPREF1078_RS07885 at 133.574 kb on - strand, within HMPREF1078_RS07885 at 133.574 kb on - strand, within HMPREF1078_RS07885 at 133.574 kb on - strand, within HMPREF1078_RS07885 at 133.575 kb on + strand, within HMPREF1078_RS07885 at 133.575 kb on + strand, within HMPREF1078_RS07885 at 133.575 kb on + strand, within HMPREF1078_RS07885 at 133.594 kb on + strand, within HMPREF1078_RS07885 at 133.595 kb on - strand, within HMPREF1078_RS07885 at 133.595 kb on - strand, within HMPREF1078_RS07885 at 133.595 kb on - strand, within HMPREF1078_RS07885 at 133.684 kb on + strand, within HMPREF1078_RS07885 at 133.684 kb on + strand, within HMPREF1078_RS07885 at 133.684 kb on + strand, within HMPREF1078_RS07885 at 133.684 kb on + strand, within HMPREF1078_RS07885 at 133.684 kb on + strand, within HMPREF1078_RS07885 at 133.684 kb on + strand, within HMPREF1078_RS07885 at 133.684 kb on + strand, within HMPREF1078_RS07885 at 133.684 kb on + strand, within HMPREF1078_RS07885 at 133.684 kb on + strand, within HMPREF1078_RS07885 at 133.684 kb on + strand, within HMPREF1078_RS07885 at 133.685 kb on - strand, within HMPREF1078_RS07885 at 133.686 kb on + strand, within HMPREF1078_RS07885 at 133.687 kb on - strand, within HMPREF1078_RS07885 at 133.715 kb on + strand, within HMPREF1078_RS07885 at 133.749 kb on - strand, within HMPREF1078_RS07885 at 133.752 kb on + strand, within HMPREF1078_RS07885 at 133.752 kb on + strand, within HMPREF1078_RS07885 at 133.752 kb on + strand, within HMPREF1078_RS07885 at 133.753 kb on - strand, within HMPREF1078_RS07885 at 133.756 kb on + strand, within HMPREF1078_RS07885 at 133.757 kb on - strand, within HMPREF1078_RS07885 at 133.760 kb on + strand, within HMPREF1078_RS07885 at 133.781 kb on - strand, within HMPREF1078_RS07885 at 133.781 kb on - strand, within HMPREF1078_RS07885 at 133.781 kb on - strand, within HMPREF1078_RS07885 at 133.830 kb on + strand, within HMPREF1078_RS07885 at 133.831 kb on - strand, within HMPREF1078_RS07885 at 133.831 kb on - strand, within HMPREF1078_RS07885 at 133.844 kb on - strand, within HMPREF1078_RS07885 at 133.915 kb on + strand, within HMPREF1078_RS07885 at 133.916 kb on - strand, within HMPREF1078_RS07885 at 133.916 kb on - strand, within HMPREF1078_RS07885 at 133.916 kb on - strand, within HMPREF1078_RS07885 at 133.928 kb on + strand, within HMPREF1078_RS07885 at 133.928 kb on + strand, within HMPREF1078_RS07885 at 133.928 kb on + strand, within HMPREF1078_RS07885 at 133.929 kb on - strand, within HMPREF1078_RS07885 at 133.933 kb on + strand, within HMPREF1078_RS07885 at 133.973 kb on + strand, within HMPREF1078_RS07885 at 133.973 kb on + strand, within HMPREF1078_RS07885 at 133.973 kb on + strand, within HMPREF1078_RS07885 at 133.973 kb on + strand, within HMPREF1078_RS07885 at 134.000 kb on - strand, within HMPREF1078_RS07885 at 134.040 kb on + strand, within HMPREF1078_RS07885 at 134.045 kb on + strand, within HMPREF1078_RS07885 at 134.045 kb on + strand, within HMPREF1078_RS07885 at 134.045 kb on + strand, within HMPREF1078_RS07885 at 134.062 kb on + strand, within HMPREF1078_RS07885 at 134.065 kb on - strand, within HMPREF1078_RS07885 at 134.088 kb on + strand, within HMPREF1078_RS07885 at 134.089 kb on - strand, within HMPREF1078_RS07885 at 134.089 kb on - strand, within HMPREF1078_RS07885 at 134.092 kb on + strand, within HMPREF1078_RS07885 at 134.092 kb on + strand, within HMPREF1078_RS07885 at 134.114 kb on + strand, within HMPREF1078_RS07885 at 134.114 kb on + strand, within HMPREF1078_RS07885 at 134.179 kb on + strand at 134.179 kb on + strand at 134.180 kb on - strand at 134.180 kb on - strand at 134.180 kb on - strand at 134.180 kb on - strand at 134.181 kb on + strand at 134.181 kb on + strand at 134.181 kb on + strand at 134.266 kb on + strand at 134.283 kb on - strand at 134.284 kb on + strand at 134.285 kb on - strand at 134.285 kb on - strand at 134.302 kb on + strand at 134.303 kb on - strand at 134.328 kb on + strand at 134.328 kb on + strand at 134.334 kb on - strand at 134.334 kb on - strand at 134.334 kb on - strand at 134.348 kb on - strand at 134.364 kb on + strand at 134.364 kb on + strand at 134.364 kb on + strand at 134.365 kb on - strand at 134.365 kb on - strand at 134.365 kb on - strand at 134.369 kb on + strand at 134.370 kb on - strand at 134.370 kb on - strand at 134.373 kb on - strand at 134.396 kb on + strand at 134.432 kb on - strand at 134.432 kb on - strand at 134.465 kb on + strand at 134.465 kb on + strand at 134.466 kb on - strand at 134.505 kb on + strand at 134.506 kb on - strand at 134.506 kb on - strand at 134.537 kb on + strand, within HMPREF1078_RS07890 at 134.542 kb on - strand, within HMPREF1078_RS07890 at 134.639 kb on - strand, within HMPREF1078_RS07890 at 134.762 kb on + strand, within HMPREF1078_RS07890 at 134.763 kb on - strand, within HMPREF1078_RS07890 at 134.764 kb on + strand, within HMPREF1078_RS07890 at 134.789 kb on + strand, within HMPREF1078_RS07890 at 134.876 kb on + strand, within HMPREF1078_RS07890 at 134.877 kb on - strand, within HMPREF1078_RS07890 at 134.919 kb on + strand, within HMPREF1078_RS07890 at 135.104 kb on + strand, within HMPREF1078_RS07890 at 135.119 kb on + strand, within HMPREF1078_RS07890 at 135.120 kb on - strand, within HMPREF1078_RS07890 at 135.173 kb on + strand, within HMPREF1078_RS07890 at 135.174 kb on - strand, within HMPREF1078_RS07890 at 135.240 kb on + strand, within HMPREF1078_RS07890 at 135.240 kb on + strand, within HMPREF1078_RS07890 at 135.240 kb on + strand, within HMPREF1078_RS07890
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mg/mL (C) remove 132,443 + HMPREF1078_RS07880 0.47 +0.2 132,443 + HMPREF1078_RS07880 0.47 -1.6 132,493 - HMPREF1078_RS07880 0.51 +0.7 132,499 + HMPREF1078_RS07880 0.51 +0.5 132,500 - HMPREF1078_RS07880 0.51 -2.7 132,502 - HMPREF1078_RS07880 0.51 +0.4 132,502 - HMPREF1078_RS07880 0.51 -0.4 132,520 + HMPREF1078_RS07880 0.53 +0.8 132,520 + HMPREF1078_RS07880 0.53 -1.0 132,522 + HMPREF1078_RS07880 0.53 +0.1 132,523 - HMPREF1078_RS07880 0.53 +0.2 132,628 - HMPREF1078_RS07880 0.61 +0.8 132,638 + HMPREF1078_RS07880 0.62 +0.1 132,638 + HMPREF1078_RS07880 0.62 -1.0 132,638 + HMPREF1078_RS07880 0.62 -0.4 132,639 - HMPREF1078_RS07880 0.62 +0.6 132,647 + HMPREF1078_RS07880 0.62 +0.3 132,648 - HMPREF1078_RS07880 0.62 -0.6 132,691 + HMPREF1078_RS07880 0.66 -1.0 132,703 - HMPREF1078_RS07880 0.67 -3.3 132,747 + HMPREF1078_RS07880 0.70 -2.5 132,748 - HMPREF1078_RS07880 0.70 -1.4 132,765 + HMPREF1078_RS07880 0.71 -0.4 132,765 + HMPREF1078_RS07880 0.71 -1.3 132,783 + HMPREF1078_RS07880 0.73 +0.7 132,784 - HMPREF1078_RS07880 0.73 +0.9 132,913 - HMPREF1078_RS07880 0.82 -0.1 132,913 - HMPREF1078_RS07880 0.82 +0.1 132,938 + HMPREF1078_RS07880 0.84 -0.0 132,938 + HMPREF1078_RS07880 0.84 -0.1 132,956 + HMPREF1078_RS07880 0.86 +0.1 132,958 + HMPREF1078_RS07880 0.86 -0.8 132,981 + HMPREF1078_RS07880 0.88 -2.4 132,981 + HMPREF1078_RS07880 0.88 -1.3 132,982 - HMPREF1078_RS07880 0.88 -1.0 132,982 - HMPREF1078_RS07880 0.88 +0.4 132,993 + HMPREF1078_RS07880 0.89 +0.3 132,993 + HMPREF1078_RS07880 0.89 -0.8 132,996 + HMPREF1078_RS07880 0.89 -0.0 133,088 + -0.5 133,089 - +1.5 133,113 - -1.0 133,113 - +0.7 133,136 - +0.8 133,173 - +1.0 133,178 + +1.8 133,235 + +0.2 133,248 - -2.1 133,283 + -1.2 133,292 + -1.7 133,293 - +0.8 133,323 + -2.2 133,475 + HMPREF1078_RS07885 0.21 -1.3 133,488 + HMPREF1078_RS07885 0.22 -0.8 133,493 + HMPREF1078_RS07885 0.22 +0.4 133,493 + HMPREF1078_RS07885 0.22 -0.6 133,493 + HMPREF1078_RS07885 0.22 +2.4 133,543 + HMPREF1078_RS07885 0.27 -2.6 133,543 + HMPREF1078_RS07885 0.27 -2.9 133,546 + HMPREF1078_RS07885 0.28 -3.0 133,547 - HMPREF1078_RS07885 0.28 -1.4 133,547 - HMPREF1078_RS07885 0.28 -0.2 133,572 - HMPREF1078_RS07885 0.30 +0.1 133,573 + HMPREF1078_RS07885 0.30 -0.4 133,573 + HMPREF1078_RS07885 0.30 -0.5 133,573 + HMPREF1078_RS07885 0.30 +0.1 133,574 - HMPREF1078_RS07885 0.30 +0.1 133,574 - HMPREF1078_RS07885 0.30 -2.2 133,574 - HMPREF1078_RS07885 0.30 +0.1 133,575 + HMPREF1078_RS07885 0.31 -1.5 133,575 + HMPREF1078_RS07885 0.31 -1.4 133,575 + HMPREF1078_RS07885 0.31 -3.4 133,594 + HMPREF1078_RS07885 0.32 -3.2 133,595 - HMPREF1078_RS07885 0.33 +0.1 133,595 - HMPREF1078_RS07885 0.33 +2.4 133,595 - HMPREF1078_RS07885 0.33 -1.7 133,684 + HMPREF1078_RS07885 0.41 -1.5 133,684 + HMPREF1078_RS07885 0.41 -1.3 133,684 + HMPREF1078_RS07885 0.41 -1.4 133,684 + HMPREF1078_RS07885 0.41 +1.4 133,684 + HMPREF1078_RS07885 0.41 -0.2 133,684 + HMPREF1078_RS07885 0.41 -1.9 133,684 + HMPREF1078_RS07885 0.41 -2.0 133,684 + HMPREF1078_RS07885 0.41 -2.1 133,684 + HMPREF1078_RS07885 0.41 -0.8 133,684 + HMPREF1078_RS07885 0.41 -1.3 133,685 - HMPREF1078_RS07885 0.42 -0.2 133,686 + HMPREF1078_RS07885 0.42 -0.4 133,687 - HMPREF1078_RS07885 0.42 -1.2 133,715 + HMPREF1078_RS07885 0.45 -0.6 133,749 - HMPREF1078_RS07885 0.48 -1.9 133,752 + HMPREF1078_RS07885 0.48 -0.8 133,752 + HMPREF1078_RS07885 0.48 +0.1 133,752 + HMPREF1078_RS07885 0.48 -0.6 133,753 - HMPREF1078_RS07885 0.48 -1.7 133,756 + HMPREF1078_RS07885 0.49 -1.9 133,757 - HMPREF1078_RS07885 0.49 +2.4 133,760 + HMPREF1078_RS07885 0.49 -0.9 133,781 - HMPREF1078_RS07885 0.51 -1.6 133,781 - HMPREF1078_RS07885 0.51 -0.2 133,781 - HMPREF1078_RS07885 0.51 -1.8 133,830 + HMPREF1078_RS07885 0.56 -2.8 133,831 - HMPREF1078_RS07885 0.56 -2.6 133,831 - HMPREF1078_RS07885 0.56 -0.6 133,844 - HMPREF1078_RS07885 0.57 -1.1 133,915 + HMPREF1078_RS07885 0.65 -2.2 133,916 - HMPREF1078_RS07885 0.65 -3.6 133,916 - HMPREF1078_RS07885 0.65 -1.8 133,916 - HMPREF1078_RS07885 0.65 -2.0 133,928 + HMPREF1078_RS07885 0.66 -0.6 133,928 + HMPREF1078_RS07885 0.66 -0.2 133,928 + HMPREF1078_RS07885 0.66 +0.2 133,929 - HMPREF1078_RS07885 0.66 -0.5 133,933 + HMPREF1078_RS07885 0.66 -0.8 133,973 + HMPREF1078_RS07885 0.70 -1.5 133,973 + HMPREF1078_RS07885 0.70 -1.1 133,973 + HMPREF1078_RS07885 0.70 -2.1 133,973 + HMPREF1078_RS07885 0.70 -2.6 134,000 - HMPREF1078_RS07885 0.73 -0.6 134,040 + HMPREF1078_RS07885 0.77 -2.6 134,045 + HMPREF1078_RS07885 0.78 -2.1 134,045 + HMPREF1078_RS07885 0.78 -0.4 134,045 + HMPREF1078_RS07885 0.78 -2.9 134,062 + HMPREF1078_RS07885 0.79 -2.7 134,065 - HMPREF1078_RS07885 0.80 -1.9 134,088 + HMPREF1078_RS07885 0.82 -2.1 134,089 - HMPREF1078_RS07885 0.82 -2.6 134,089 - HMPREF1078_RS07885 0.82 -1.9 134,092 + HMPREF1078_RS07885 0.82 -2.1 134,092 + HMPREF1078_RS07885 0.82 -2.1 134,114 + HMPREF1078_RS07885 0.84 -0.9 134,114 + HMPREF1078_RS07885 0.84 -0.8 134,179 + -1.7 134,179 + -1.9 134,180 - -0.9 134,180 - -2.0 134,180 - -2.0 134,180 - -1.1 134,181 + -1.6 134,181 + -2.1 134,181 + -0.2 134,266 + +0.2 134,283 - -1.8 134,284 + -1.5 134,285 - -1.1 134,285 - +0.3 134,302 + -0.5 134,303 - -1.1 134,328 + +0.5 134,328 + -1.6 134,334 - +0.5 134,334 - -2.1 134,334 - +0.2 134,348 - +0.8 134,364 + +0.8 134,364 + -0.3 134,364 + -1.9 134,365 - -0.5 134,365 - -1.0 134,365 - -0.6 134,369 + +0.7 134,370 - +0.6 134,370 - +1.2 134,373 - +0.4 134,396 + +0.6 134,432 - -0.6 134,432 - +0.2 134,465 + +0.6 134,465 + -0.5 134,466 - +0.1 134,505 + -2.4 134,506 - -0.5 134,506 - -0.8 134,537 + HMPREF1078_RS07890 0.11 -0.8 134,542 - HMPREF1078_RS07890 0.11 -0.9 134,639 - HMPREF1078_RS07890 0.17 +0.1 134,762 + HMPREF1078_RS07890 0.25 +0.9 134,763 - HMPREF1078_RS07890 0.25 +0.6 134,764 + HMPREF1078_RS07890 0.25 +0.6 134,789 + HMPREF1078_RS07890 0.26 -1.5 134,876 + HMPREF1078_RS07890 0.32 -1.7 134,877 - HMPREF1078_RS07890 0.32 +0.2 134,919 + HMPREF1078_RS07890 0.35 -0.5 135,104 + HMPREF1078_RS07890 0.46 +1.0 135,119 + HMPREF1078_RS07890 0.47 -0.7 135,120 - HMPREF1078_RS07890 0.47 +0.0 135,173 + HMPREF1078_RS07890 0.50 -0.5 135,174 - HMPREF1078_RS07890 0.50 +0.6 135,240 + HMPREF1078_RS07890 0.54 +0.4 135,240 + HMPREF1078_RS07890 0.54 +1.3 135,240 + HMPREF1078_RS07890 0.54 -2.4
Or see this region's nucleotide sequence