Experiment: D-Mannose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS07835 and HMPREF1078_RS07840 are separated by 81 nucleotides HMPREF1078_RS07840 and HMPREF1078_RS07845 are separated by 208 nucleotides HMPREF1078_RS07845 and HMPREF1078_RS07850 are separated by 30 nucleotides
HMPREF1078_RS07835: HMPREF1078_RS07835 - DUF4852 domain-containing protein, at 119,667 to 120,707
_RS07835
HMPREF1078_RS07840: HMPREF1078_RS07840 - HD domain-containing protein, at 120,789 to 121,451
_RS07840
HMPREF1078_RS07845: HMPREF1078_RS07845 - pyruvate:ferredoxin (flavodoxin) oxidoreductase, at 121,660 to 125,208
_RS07845
HMPREF1078_RS07850: HMPREF1078_RS07850 - AAA family ATPase, at 125,239 to 126,417
_RS07850
Position (kb) 121
122
123
124
125
126 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 120.675 kb on + strand at 120.707 kb on + strand at 120.708 kb on - strand at 120.708 kb on - strand at 120.715 kb on - strand at 120.719 kb on + strand at 120.732 kb on - strand at 120.772 kb on - strand at 120.796 kb on - strand at 120.796 kb on - strand at 120.796 kb on - strand at 120.796 kb on - strand at 120.810 kb on + strand at 120.889 kb on + strand, within HMPREF1078_RS07840 at 120.960 kb on + strand, within HMPREF1078_RS07840 at 120.961 kb on - strand, within HMPREF1078_RS07840 at 120.961 kb on - strand, within HMPREF1078_RS07840 at 120.962 kb on + strand, within HMPREF1078_RS07840 at 120.962 kb on + strand, within HMPREF1078_RS07840 at 120.963 kb on - strand, within HMPREF1078_RS07840 at 120.963 kb on - strand, within HMPREF1078_RS07840 at 120.963 kb on - strand, within HMPREF1078_RS07840 at 121.014 kb on - strand, within HMPREF1078_RS07840 at 121.133 kb on + strand, within HMPREF1078_RS07840 at 121.133 kb on + strand, within HMPREF1078_RS07840 at 121.134 kb on - strand, within HMPREF1078_RS07840 at 121.134 kb on - strand, within HMPREF1078_RS07840 at 121.136 kb on + strand, within HMPREF1078_RS07840 at 121.172 kb on + strand, within HMPREF1078_RS07840 at 121.196 kb on + strand, within HMPREF1078_RS07840 at 121.197 kb on - strand, within HMPREF1078_RS07840 at 121.197 kb on - strand, within HMPREF1078_RS07840 at 121.197 kb on - strand, within HMPREF1078_RS07840 at 121.239 kb on + strand, within HMPREF1078_RS07840 at 121.239 kb on + strand, within HMPREF1078_RS07840 at 121.239 kb on + strand, within HMPREF1078_RS07840 at 121.240 kb on - strand, within HMPREF1078_RS07840 at 121.241 kb on + strand, within HMPREF1078_RS07840 at 121.296 kb on + strand, within HMPREF1078_RS07840 at 121.296 kb on + strand, within HMPREF1078_RS07840 at 121.296 kb on + strand, within HMPREF1078_RS07840 at 121.297 kb on - strand, within HMPREF1078_RS07840 at 121.297 kb on - strand, within HMPREF1078_RS07840 at 121.308 kb on + strand, within HMPREF1078_RS07840 at 121.308 kb on + strand, within HMPREF1078_RS07840 at 121.309 kb on - strand, within HMPREF1078_RS07840 at 121.352 kb on + strand, within HMPREF1078_RS07840 at 121.353 kb on - strand, within HMPREF1078_RS07840 at 121.363 kb on + strand, within HMPREF1078_RS07840 at 121.400 kb on + strand at 121.401 kb on - strand at 121.402 kb on + strand at 121.439 kb on - strand at 121.439 kb on - strand at 121.443 kb on + strand at 121.443 kb on + strand at 121.443 kb on + strand at 121.443 kb on + strand at 121.444 kb on - strand at 121.444 kb on - strand at 121.444 kb on - strand at 121.444 kb on - strand at 121.464 kb on - strand at 121.464 kb on - strand at 121.466 kb on + strand at 121.468 kb on + strand at 121.469 kb on - strand at 121.469 kb on - strand at 121.470 kb on + strand at 121.470 kb on + strand at 121.470 kb on + strand at 121.470 kb on + strand at 121.470 kb on + strand at 121.471 kb on - strand at 121.475 kb on + strand at 121.480 kb on - strand at 121.570 kb on + strand at 121.608 kb on + strand at 121.642 kb on + strand at 121.643 kb on - strand at 121.662 kb on - strand at 121.670 kb on - strand at 121.670 kb on - strand at 121.700 kb on + strand at 121.701 kb on - strand at 121.705 kb on - strand at 121.705 kb on - strand at 121.908 kb on - strand at 122.101 kb on - strand, within HMPREF1078_RS07845 at 122.236 kb on - strand, within HMPREF1078_RS07845 at 122.291 kb on + strand, within HMPREF1078_RS07845 at 122.292 kb on - strand, within HMPREF1078_RS07845 at 122.292 kb on - strand, within HMPREF1078_RS07845 at 122.292 kb on - strand, within HMPREF1078_RS07845 at 122.380 kb on - strand, within HMPREF1078_RS07845 at 122.380 kb on - strand, within HMPREF1078_RS07845 at 122.479 kb on - strand, within HMPREF1078_RS07845 at 122.480 kb on + strand, within HMPREF1078_RS07845 at 122.502 kb on - strand, within HMPREF1078_RS07845 at 122.533 kb on - strand, within HMPREF1078_RS07845 at 122.605 kb on - strand, within HMPREF1078_RS07845 at 122.673 kb on + strand, within HMPREF1078_RS07845 at 122.694 kb on + strand, within HMPREF1078_RS07845 at 122.844 kb on + strand, within HMPREF1078_RS07845 at 122.989 kb on + strand, within HMPREF1078_RS07845 at 122.990 kb on - strand, within HMPREF1078_RS07845 at 123.117 kb on - strand, within HMPREF1078_RS07845 at 123.274 kb on - strand, within HMPREF1078_RS07845 at 123.375 kb on - strand, within HMPREF1078_RS07845 at 123.491 kb on - strand, within HMPREF1078_RS07845 at 123.570 kb on + strand, within HMPREF1078_RS07845 at 123.619 kb on + strand, within HMPREF1078_RS07845 at 123.620 kb on - strand, within HMPREF1078_RS07845 at 123.714 kb on - strand, within HMPREF1078_RS07845 at 123.717 kb on + strand, within HMPREF1078_RS07845 at 123.718 kb on - strand, within HMPREF1078_RS07845 at 123.718 kb on - strand, within HMPREF1078_RS07845 at 123.771 kb on - strand, within HMPREF1078_RS07845 at 123.851 kb on + strand, within HMPREF1078_RS07845 at 123.852 kb on - strand, within HMPREF1078_RS07845 at 123.873 kb on + strand, within HMPREF1078_RS07845 at 123.874 kb on - strand, within HMPREF1078_RS07845 at 123.946 kb on - strand, within HMPREF1078_RS07845 at 123.946 kb on - strand, within HMPREF1078_RS07845 at 124.073 kb on - strand, within HMPREF1078_RS07845 at 124.158 kb on - strand, within HMPREF1078_RS07845 at 124.216 kb on - strand, within HMPREF1078_RS07845 at 124.234 kb on - strand, within HMPREF1078_RS07845 at 124.240 kb on - strand, within HMPREF1078_RS07845 at 124.388 kb on - strand, within HMPREF1078_RS07845 at 124.434 kb on + strand, within HMPREF1078_RS07845 at 124.435 kb on - strand, within HMPREF1078_RS07845 at 124.464 kb on + strand, within HMPREF1078_RS07845 at 124.467 kb on - strand, within HMPREF1078_RS07845 at 124.500 kb on - strand, within HMPREF1078_RS07845 at 124.765 kb on + strand, within HMPREF1078_RS07845 at 124.814 kb on - strand, within HMPREF1078_RS07845 at 124.814 kb on - strand, within HMPREF1078_RS07845 at 124.837 kb on - strand, within HMPREF1078_RS07845 at 124.860 kb on + strand at 124.871 kb on - strand at 124.871 kb on - strand at 124.953 kb on - strand at 124.953 kb on - strand at 125.035 kb on + strand at 125.036 kb on - strand at 125.058 kb on + strand at 125.087 kb on + strand at 125.145 kb on + strand at 125.154 kb on + strand at 125.154 kb on + strand at 125.209 kb on - strand at 125.217 kb on - strand at 125.220 kb on - strand at 125.226 kb on - strand at 125.245 kb on + strand at 125.246 kb on - strand at 125.310 kb on - strand at 125.310 kb on - strand at 125.313 kb on - strand at 125.326 kb on - strand at 125.378 kb on - strand, within HMPREF1078_RS07850 at 125.413 kb on - strand, within HMPREF1078_RS07850 at 125.413 kb on - strand, within HMPREF1078_RS07850 at 125.422 kb on - strand, within HMPREF1078_RS07850 at 125.433 kb on + strand, within HMPREF1078_RS07850 at 125.463 kb on + strand, within HMPREF1078_RS07850 at 125.464 kb on - strand, within HMPREF1078_RS07850 at 125.464 kb on - strand, within HMPREF1078_RS07850 at 125.490 kb on - strand, within HMPREF1078_RS07850 at 125.506 kb on - strand, within HMPREF1078_RS07850 at 125.507 kb on + strand, within HMPREF1078_RS07850 at 125.507 kb on + strand, within HMPREF1078_RS07850 at 125.508 kb on - strand, within HMPREF1078_RS07850 at 125.508 kb on - strand, within HMPREF1078_RS07850 at 125.508 kb on - strand, within HMPREF1078_RS07850 at 125.508 kb on - strand, within HMPREF1078_RS07850 at 125.508 kb on - strand, within HMPREF1078_RS07850 at 125.508 kb on - strand, within HMPREF1078_RS07850 at 125.508 kb on - strand, within HMPREF1078_RS07850 at 125.508 kb on - strand, within HMPREF1078_RS07850 at 125.508 kb on - strand, within HMPREF1078_RS07850 at 125.512 kb on - strand, within HMPREF1078_RS07850 at 125.512 kb on - strand, within HMPREF1078_RS07850 at 125.514 kb on - strand, within HMPREF1078_RS07850 at 125.561 kb on - strand, within HMPREF1078_RS07850 at 125.589 kb on - strand, within HMPREF1078_RS07850 at 125.597 kb on + strand, within HMPREF1078_RS07850 at 125.597 kb on + strand, within HMPREF1078_RS07850 at 125.598 kb on - strand, within HMPREF1078_RS07850 at 125.598 kb on - strand, within HMPREF1078_RS07850 at 125.598 kb on - strand, within HMPREF1078_RS07850 at 125.627 kb on - strand, within HMPREF1078_RS07850 at 125.627 kb on - strand, within HMPREF1078_RS07850 at 125.659 kb on - strand, within HMPREF1078_RS07850 at 125.685 kb on - strand, within HMPREF1078_RS07850 at 125.732 kb on - strand, within HMPREF1078_RS07850 at 125.732 kb on - strand, within HMPREF1078_RS07850 at 125.732 kb on - strand, within HMPREF1078_RS07850 at 125.736 kb on - strand, within HMPREF1078_RS07850 at 125.736 kb on - strand, within HMPREF1078_RS07850 at 125.747 kb on - strand, within HMPREF1078_RS07850 at 125.760 kb on + strand, within HMPREF1078_RS07850 at 125.761 kb on - strand, within HMPREF1078_RS07850 at 125.835 kb on - strand, within HMPREF1078_RS07850 at 125.835 kb on - strand, within HMPREF1078_RS07850 at 125.847 kb on - strand, within HMPREF1078_RS07850 at 125.906 kb on - strand, within HMPREF1078_RS07850 at 125.920 kb on - strand, within HMPREF1078_RS07850 at 125.920 kb on - strand, within HMPREF1078_RS07850 at 125.922 kb on - strand, within HMPREF1078_RS07850 at 125.988 kb on - strand, within HMPREF1078_RS07850 at 125.988 kb on - strand, within HMPREF1078_RS07850 at 126.084 kb on - strand, within HMPREF1078_RS07850 at 126.189 kb on + strand, within HMPREF1078_RS07850 at 126.189 kb on + strand, within HMPREF1078_RS07850 at 126.190 kb on - strand, within HMPREF1078_RS07850 at 126.190 kb on - strand, within HMPREF1078_RS07850 at 126.190 kb on - strand, within HMPREF1078_RS07850 at 126.190 kb on - strand, within HMPREF1078_RS07850
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mg/mL (C) remove 120,675 + +1.0 120,707 + -0.7 120,708 - -0.1 120,708 - -0.1 120,715 - -1.5 120,719 + -0.9 120,732 - +0.4 120,772 - -0.2 120,796 - -0.2 120,796 - -0.6 120,796 - -0.5 120,796 - -0.2 120,810 + -0.5 120,889 + HMPREF1078_RS07840 0.15 +0.8 120,960 + HMPREF1078_RS07840 0.26 -0.7 120,961 - HMPREF1078_RS07840 0.26 +0.3 120,961 - HMPREF1078_RS07840 0.26 +1.1 120,962 + HMPREF1078_RS07840 0.26 -0.6 120,962 + HMPREF1078_RS07840 0.26 -0.2 120,963 - HMPREF1078_RS07840 0.26 -0.5 120,963 - HMPREF1078_RS07840 0.26 -0.3 120,963 - HMPREF1078_RS07840 0.26 -0.1 121,014 - HMPREF1078_RS07840 0.34 +1.0 121,133 + HMPREF1078_RS07840 0.52 -0.2 121,133 + HMPREF1078_RS07840 0.52 -0.5 121,134 - HMPREF1078_RS07840 0.52 -0.2 121,134 - HMPREF1078_RS07840 0.52 +0.0 121,136 + HMPREF1078_RS07840 0.52 -0.6 121,172 + HMPREF1078_RS07840 0.58 +0.4 121,196 + HMPREF1078_RS07840 0.61 -1.6 121,197 - HMPREF1078_RS07840 0.62 -0.0 121,197 - HMPREF1078_RS07840 0.62 -0.4 121,197 - HMPREF1078_RS07840 0.62 -0.1 121,239 + HMPREF1078_RS07840 0.68 -2.0 121,239 + HMPREF1078_RS07840 0.68 -0.8 121,239 + HMPREF1078_RS07840 0.68 -0.7 121,240 - HMPREF1078_RS07840 0.68 +0.2 121,241 + HMPREF1078_RS07840 0.68 +0.0 121,296 + HMPREF1078_RS07840 0.76 +0.6 121,296 + HMPREF1078_RS07840 0.76 -0.1 121,296 + HMPREF1078_RS07840 0.76 -1.6 121,297 - HMPREF1078_RS07840 0.77 +0.7 121,297 - HMPREF1078_RS07840 0.77 +0.4 121,308 + HMPREF1078_RS07840 0.78 +0.4 121,308 + HMPREF1078_RS07840 0.78 -0.1 121,309 - HMPREF1078_RS07840 0.78 -0.7 121,352 + HMPREF1078_RS07840 0.85 +0.7 121,353 - HMPREF1078_RS07840 0.85 -0.5 121,363 + HMPREF1078_RS07840 0.87 -0.2 121,400 + +0.4 121,401 - -2.1 121,402 + -1.1 121,439 - +1.3 121,439 - -1.2 121,443 + -0.6 121,443 + +1.1 121,443 + +0.3 121,443 + +1.3 121,444 - -0.3 121,444 - +0.4 121,444 - -0.8 121,444 - -0.6 121,464 - +0.3 121,464 - +0.1 121,466 + +1.9 121,468 + +0.1 121,469 - -0.3 121,469 - +0.4 121,470 + -0.5 121,470 + +2.4 121,470 + -0.1 121,470 + +0.6 121,470 + +0.4 121,471 - +0.3 121,475 + -1.7 121,480 - -0.5 121,570 + -2.3 121,608 + -1.7 121,642 + -1.1 121,643 - -0.6 121,662 - +0.4 121,670 - -0.7 121,670 - -2.4 121,700 + -0.9 121,701 - -0.4 121,705 - -0.8 121,705 - +0.8 121,908 - -1.1 122,101 - HMPREF1078_RS07845 0.12 +2.4 122,236 - HMPREF1078_RS07845 0.16 +0.8 122,291 + HMPREF1078_RS07845 0.18 +0.4 122,292 - HMPREF1078_RS07845 0.18 +2.4 122,292 - HMPREF1078_RS07845 0.18 -0.4 122,292 - HMPREF1078_RS07845 0.18 +0.4 122,380 - HMPREF1078_RS07845 0.20 -0.9 122,380 - HMPREF1078_RS07845 0.20 -0.2 122,479 - HMPREF1078_RS07845 0.23 +0.4 122,480 + HMPREF1078_RS07845 0.23 -0.4 122,502 - HMPREF1078_RS07845 0.24 -0.9 122,533 - HMPREF1078_RS07845 0.25 +1.4 122,605 - HMPREF1078_RS07845 0.27 -0.4 122,673 + HMPREF1078_RS07845 0.29 +0.8 122,694 + HMPREF1078_RS07845 0.29 -1.1 122,844 + HMPREF1078_RS07845 0.33 -0.4 122,989 + HMPREF1078_RS07845 0.37 -0.2 122,990 - HMPREF1078_RS07845 0.37 +0.1 123,117 - HMPREF1078_RS07845 0.41 -1.4 123,274 - HMPREF1078_RS07845 0.45 -0.2 123,375 - HMPREF1078_RS07845 0.48 +0.8 123,491 - HMPREF1078_RS07845 0.52 +0.8 123,570 + HMPREF1078_RS07845 0.54 +0.4 123,619 + HMPREF1078_RS07845 0.55 -0.6 123,620 - HMPREF1078_RS07845 0.55 -0.4 123,714 - HMPREF1078_RS07845 0.58 -0.4 123,717 + HMPREF1078_RS07845 0.58 -0.4 123,718 - HMPREF1078_RS07845 0.58 -0.8 123,718 - HMPREF1078_RS07845 0.58 +0.4 123,771 - HMPREF1078_RS07845 0.59 -0.6 123,851 + HMPREF1078_RS07845 0.62 +0.1 123,852 - HMPREF1078_RS07845 0.62 -0.2 123,873 + HMPREF1078_RS07845 0.62 +0.8 123,874 - HMPREF1078_RS07845 0.62 +0.8 123,946 - HMPREF1078_RS07845 0.64 -0.8 123,946 - HMPREF1078_RS07845 0.64 -0.2 124,073 - HMPREF1078_RS07845 0.68 +1.4 124,158 - HMPREF1078_RS07845 0.70 +0.4 124,216 - HMPREF1078_RS07845 0.72 +0.4 124,234 - HMPREF1078_RS07845 0.73 +0.1 124,240 - HMPREF1078_RS07845 0.73 +0.8 124,388 - HMPREF1078_RS07845 0.77 +0.1 124,434 + HMPREF1078_RS07845 0.78 +1.4 124,435 - HMPREF1078_RS07845 0.78 +0.8 124,464 + HMPREF1078_RS07845 0.79 +0.4 124,467 - HMPREF1078_RS07845 0.79 +1.4 124,500 - HMPREF1078_RS07845 0.80 -0.8 124,765 + HMPREF1078_RS07845 0.87 +0.8 124,814 - HMPREF1078_RS07845 0.89 -0.2 124,814 - HMPREF1078_RS07845 0.89 +3.4 124,837 - HMPREF1078_RS07845 0.90 +0.4 124,860 + -0.4 124,871 - -0.6 124,871 - +0.1 124,953 - -1.4 124,953 - +0.1 125,035 + +0.1 125,036 - +0.8 125,058 + +1.4 125,087 + +0.4 125,145 + +1.4 125,154 + +0.8 125,154 + -0.6 125,209 - +0.8 125,217 - -0.9 125,220 - -0.2 125,226 - -0.5 125,245 + +0.8 125,246 - -2.6 125,310 - -0.2 125,310 - +0.8 125,313 - +0.9 125,326 - -0.2 125,378 - HMPREF1078_RS07850 0.12 -1.7 125,413 - HMPREF1078_RS07850 0.15 -0.3 125,413 - HMPREF1078_RS07850 0.15 -1.3 125,422 - HMPREF1078_RS07850 0.16 +0.8 125,433 + HMPREF1078_RS07850 0.16 +0.8 125,463 + HMPREF1078_RS07850 0.19 -1.1 125,464 - HMPREF1078_RS07850 0.19 +0.5 125,464 - HMPREF1078_RS07850 0.19 +0.5 125,490 - HMPREF1078_RS07850 0.21 -0.3 125,506 - HMPREF1078_RS07850 0.23 -0.3 125,507 + HMPREF1078_RS07850 0.23 +0.4 125,507 + HMPREF1078_RS07850 0.23 -0.2 125,508 - HMPREF1078_RS07850 0.23 -0.3 125,508 - HMPREF1078_RS07850 0.23 -1.8 125,508 - HMPREF1078_RS07850 0.23 -0.4 125,508 - HMPREF1078_RS07850 0.23 -1.9 125,508 - HMPREF1078_RS07850 0.23 -2.4 125,508 - HMPREF1078_RS07850 0.23 -2.1 125,508 - HMPREF1078_RS07850 0.23 -0.5 125,508 - HMPREF1078_RS07850 0.23 -2.3 125,508 - HMPREF1078_RS07850 0.23 -1.1 125,512 - HMPREF1078_RS07850 0.23 -0.0 125,512 - HMPREF1078_RS07850 0.23 +0.1 125,514 - HMPREF1078_RS07850 0.23 -0.3 125,561 - HMPREF1078_RS07850 0.27 -1.3 125,589 - HMPREF1078_RS07850 0.30 -1.9 125,597 + HMPREF1078_RS07850 0.30 +0.4 125,597 + HMPREF1078_RS07850 0.30 +0.4 125,598 - HMPREF1078_RS07850 0.30 -1.1 125,598 - HMPREF1078_RS07850 0.30 -0.9 125,598 - HMPREF1078_RS07850 0.30 +0.7 125,627 - HMPREF1078_RS07850 0.33 -0.0 125,627 - HMPREF1078_RS07850 0.33 -0.4 125,659 - HMPREF1078_RS07850 0.36 -1.3 125,685 - HMPREF1078_RS07850 0.38 -0.3 125,732 - HMPREF1078_RS07850 0.42 -1.9 125,732 - HMPREF1078_RS07850 0.42 -2.3 125,732 - HMPREF1078_RS07850 0.42 -1.6 125,736 - HMPREF1078_RS07850 0.42 -2.1 125,736 - HMPREF1078_RS07850 0.42 +0.7 125,747 - HMPREF1078_RS07850 0.43 -2.2 125,760 + HMPREF1078_RS07850 0.44 +0.1 125,761 - HMPREF1078_RS07850 0.44 -2.2 125,835 - HMPREF1078_RS07850 0.51 -1.4 125,835 - HMPREF1078_RS07850 0.51 -1.9 125,847 - HMPREF1078_RS07850 0.52 -0.2 125,906 - HMPREF1078_RS07850 0.57 -0.0 125,920 - HMPREF1078_RS07850 0.58 -1.6 125,920 - HMPREF1078_RS07850 0.58 -1.4 125,922 - HMPREF1078_RS07850 0.58 -0.4 125,988 - HMPREF1078_RS07850 0.64 -1.1 125,988 - HMPREF1078_RS07850 0.64 -2.2 126,084 - HMPREF1078_RS07850 0.72 -1.5 126,189 + HMPREF1078_RS07850 0.81 +2.4 126,189 + HMPREF1078_RS07850 0.81 +0.1 126,190 - HMPREF1078_RS07850 0.81 -0.1 126,190 - HMPREF1078_RS07850 0.81 -1.4 126,190 - HMPREF1078_RS07850 0.81 -0.3 126,190 - HMPREF1078_RS07850 0.81 -0.8
Or see this region's nucleotide sequence