Experiment: D-Mannose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS07700 and HMPREF1078_RS07705 are separated by 33 nucleotides HMPREF1078_RS07705 and HMPREF1078_RS07710 are separated by 2 nucleotides
HMPREF1078_RS07700: HMPREF1078_RS07700 - chloride channel protein, at 81,409 to 83,217
_RS07700
HMPREF1078_RS07705: HMPREF1078_RS07705 - sugar transferase, at 83,251 to 84,651
_RS07705
HMPREF1078_RS07710: HMPREF1078_RS07710 - L-threonylcarbamoyladenylate synthase, at 84,654 to 85,214
_RS07710
Position (kb) 83
84
85 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 82.254 kb on - strand, within HMPREF1078_RS07700 at 82.254 kb on - strand, within HMPREF1078_RS07700 at 82.256 kb on - strand, within HMPREF1078_RS07700 at 82.261 kb on - strand, within HMPREF1078_RS07700 at 82.261 kb on - strand, within HMPREF1078_RS07700 at 82.262 kb on - strand, within HMPREF1078_RS07700 at 82.274 kb on - strand, within HMPREF1078_RS07700 at 82.274 kb on - strand, within HMPREF1078_RS07700 at 82.274 kb on - strand, within HMPREF1078_RS07700 at 82.276 kb on - strand, within HMPREF1078_RS07700 at 82.343 kb on - strand, within HMPREF1078_RS07700 at 82.594 kb on - strand, within HMPREF1078_RS07700 at 82.607 kb on - strand, within HMPREF1078_RS07700 at 82.679 kb on - strand, within HMPREF1078_RS07700 at 82.679 kb on - strand, within HMPREF1078_RS07700 at 82.792 kb on - strand, within HMPREF1078_RS07700 at 82.792 kb on - strand, within HMPREF1078_RS07700 at 82.827 kb on - strand, within HMPREF1078_RS07700 at 82.864 kb on - strand, within HMPREF1078_RS07700 at 82.907 kb on - strand, within HMPREF1078_RS07700 at 82.907 kb on - strand, within HMPREF1078_RS07700 at 82.945 kb on - strand, within HMPREF1078_RS07700 at 83.004 kb on - strand, within HMPREF1078_RS07700 at 83.004 kb on - strand, within HMPREF1078_RS07700 at 83.098 kb on - strand at 83.098 kb on - strand at 83.143 kb on - strand at 83.143 kb on - strand at 83.143 kb on - strand at 83.281 kb on - strand at 83.287 kb on - strand at 83.287 kb on - strand at 83.287 kb on - strand at 83.289 kb on - strand at 83.323 kb on - strand at 83.336 kb on - strand at 83.336 kb on - strand at 83.336 kb on - strand at 83.336 kb on - strand at 83.341 kb on - strand at 83.341 kb on - strand at 83.346 kb on - strand at 83.346 kb on - strand at 83.346 kb on - strand at 83.391 kb on - strand, within HMPREF1078_RS07705 at 83.391 kb on - strand, within HMPREF1078_RS07705 at 83.413 kb on - strand, within HMPREF1078_RS07705 at 83.442 kb on - strand, within HMPREF1078_RS07705 at 83.445 kb on - strand, within HMPREF1078_RS07705 at 83.448 kb on - strand, within HMPREF1078_RS07705 at 83.515 kb on - strand, within HMPREF1078_RS07705 at 83.562 kb on - strand, within HMPREF1078_RS07705 at 83.575 kb on - strand, within HMPREF1078_RS07705 at 83.646 kb on - strand, within HMPREF1078_RS07705 at 83.646 kb on - strand, within HMPREF1078_RS07705 at 83.646 kb on - strand, within HMPREF1078_RS07705 at 83.646 kb on - strand, within HMPREF1078_RS07705 at 83.664 kb on - strand, within HMPREF1078_RS07705 at 83.664 kb on - strand, within HMPREF1078_RS07705 at 83.664 kb on - strand, within HMPREF1078_RS07705 at 83.664 kb on - strand, within HMPREF1078_RS07705 at 83.819 kb on - strand, within HMPREF1078_RS07705 at 83.819 kb on - strand, within HMPREF1078_RS07705 at 83.894 kb on - strand, within HMPREF1078_RS07705 at 83.908 kb on - strand, within HMPREF1078_RS07705 at 83.944 kb on - strand, within HMPREF1078_RS07705 at 83.972 kb on - strand, within HMPREF1078_RS07705 at 83.983 kb on - strand, within HMPREF1078_RS07705 at 83.986 kb on - strand, within HMPREF1078_RS07705 at 84.005 kb on - strand, within HMPREF1078_RS07705 at 84.049 kb on - strand, within HMPREF1078_RS07705 at 84.221 kb on - strand, within HMPREF1078_RS07705 at 84.264 kb on - strand, within HMPREF1078_RS07705 at 84.264 kb on - strand, within HMPREF1078_RS07705 at 84.264 kb on - strand, within HMPREF1078_RS07705 at 84.264 kb on - strand, within HMPREF1078_RS07705 at 84.264 kb on - strand, within HMPREF1078_RS07705 at 84.264 kb on - strand, within HMPREF1078_RS07705 at 84.312 kb on - strand, within HMPREF1078_RS07705 at 84.312 kb on - strand, within HMPREF1078_RS07705 at 84.312 kb on - strand, within HMPREF1078_RS07705 at 84.312 kb on - strand, within HMPREF1078_RS07705 at 84.316 kb on - strand, within HMPREF1078_RS07705 at 84.316 kb on - strand, within HMPREF1078_RS07705 at 84.318 kb on - strand, within HMPREF1078_RS07705 at 84.436 kb on - strand, within HMPREF1078_RS07705 at 84.438 kb on - strand, within HMPREF1078_RS07705 at 84.441 kb on - strand, within HMPREF1078_RS07705 at 84.453 kb on - strand, within HMPREF1078_RS07705 at 84.519 kb on - strand at 84.519 kb on - strand at 84.519 kb on - strand at 84.574 kb on - strand at 84.607 kb on - strand at 84.620 kb on - strand at 84.620 kb on - strand at 84.620 kb on - strand at 84.620 kb on - strand at 84.620 kb on - strand at 84.624 kb on - strand at 84.624 kb on - strand at 85.241 kb on - strand at 85.356 kb on + strand at 85.359 kb on + strand at 85.359 kb on + strand at 85.359 kb on + strand at 85.360 kb on - strand at 85.360 kb on - strand at 85.364 kb on + strand at 85.381 kb on - strand at 85.385 kb on + strand at 85.385 kb on + strand at 85.385 kb on + strand at 85.385 kb on + strand at 85.385 kb on + strand at 85.385 kb on + strand at 85.386 kb on - strand at 85.386 kb on - strand at 85.392 kb on + strand at 85.394 kb on + strand at 85.396 kb on - strand at 85.404 kb on + strand at 85.417 kb on + strand at 85.443 kb on + strand at 85.493 kb on + strand at 85.493 kb on + strand at 85.494 kb on - strand at 85.535 kb on + strand at 85.535 kb on + strand at 85.551 kb on + strand at 85.580 kb on + strand at 85.581 kb on - strand at 85.581 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mg/mL (C) remove 82,254 - HMPREF1078_RS07700 0.47 -1.9 82,254 - HMPREF1078_RS07700 0.47 -1.8 82,256 - HMPREF1078_RS07700 0.47 +0.4 82,261 - HMPREF1078_RS07700 0.47 -0.2 82,261 - HMPREF1078_RS07700 0.47 -0.5 82,262 - HMPREF1078_RS07700 0.47 -0.4 82,274 - HMPREF1078_RS07700 0.48 -0.2 82,274 - HMPREF1078_RS07700 0.48 -1.4 82,274 - HMPREF1078_RS07700 0.48 -0.4 82,276 - HMPREF1078_RS07700 0.48 -1.2 82,343 - HMPREF1078_RS07700 0.52 -0.2 82,594 - HMPREF1078_RS07700 0.66 -0.5 82,607 - HMPREF1078_RS07700 0.66 -0.9 82,679 - HMPREF1078_RS07700 0.70 -0.7 82,679 - HMPREF1078_RS07700 0.70 -0.1 82,792 - HMPREF1078_RS07700 0.76 -0.9 82,792 - HMPREF1078_RS07700 0.76 -3.0 82,827 - HMPREF1078_RS07700 0.78 -0.6 82,864 - HMPREF1078_RS07700 0.80 +2.4 82,907 - HMPREF1078_RS07700 0.83 -0.8 82,907 - HMPREF1078_RS07700 0.83 -1.2 82,945 - HMPREF1078_RS07700 0.85 -1.8 83,004 - HMPREF1078_RS07700 0.88 -1.1 83,004 - HMPREF1078_RS07700 0.88 +0.6 83,098 - +0.6 83,098 - -0.6 83,143 - -1.7 83,143 - -2.4 83,143 - -2.2 83,281 - -0.9 83,287 - -0.6 83,287 - -2.9 83,287 - -1.3 83,289 - -1.7 83,323 - -1.5 83,336 - -2.7 83,336 - -2.8 83,336 - -2.6 83,336 - -0.9 83,341 - -1.4 83,341 - -2.7 83,346 - -0.9 83,346 - -1.8 83,346 - -1.5 83,391 - HMPREF1078_RS07705 0.10 -0.6 83,391 - HMPREF1078_RS07705 0.10 -3.2 83,413 - HMPREF1078_RS07705 0.12 -1.3 83,442 - HMPREF1078_RS07705 0.14 -1.5 83,445 - HMPREF1078_RS07705 0.14 -2.0 83,448 - HMPREF1078_RS07705 0.14 -2.4 83,515 - HMPREF1078_RS07705 0.19 -3.6 83,562 - HMPREF1078_RS07705 0.22 -2.6 83,575 - HMPREF1078_RS07705 0.23 -3.8 83,646 - HMPREF1078_RS07705 0.28 -2.8 83,646 - HMPREF1078_RS07705 0.28 -1.3 83,646 - HMPREF1078_RS07705 0.28 +0.1 83,646 - HMPREF1078_RS07705 0.28 -2.4 83,664 - HMPREF1078_RS07705 0.29 -0.8 83,664 - HMPREF1078_RS07705 0.29 -2.1 83,664 - HMPREF1078_RS07705 0.29 -1.9 83,664 - HMPREF1078_RS07705 0.29 -3.1 83,819 - HMPREF1078_RS07705 0.41 -0.6 83,819 - HMPREF1078_RS07705 0.41 -2.7 83,894 - HMPREF1078_RS07705 0.46 -1.2 83,908 - HMPREF1078_RS07705 0.47 -1.9 83,944 - HMPREF1078_RS07705 0.49 -2.2 83,972 - HMPREF1078_RS07705 0.51 -3.1 83,983 - HMPREF1078_RS07705 0.52 -2.3 83,986 - HMPREF1078_RS07705 0.52 -4.2 84,005 - HMPREF1078_RS07705 0.54 -2.7 84,049 - HMPREF1078_RS07705 0.57 -3.8 84,221 - HMPREF1078_RS07705 0.69 -1.2 84,264 - HMPREF1078_RS07705 0.72 -1.9 84,264 - HMPREF1078_RS07705 0.72 -2.1 84,264 - HMPREF1078_RS07705 0.72 -3.9 84,264 - HMPREF1078_RS07705 0.72 -1.1 84,264 - HMPREF1078_RS07705 0.72 -3.2 84,264 - HMPREF1078_RS07705 0.72 -2.5 84,312 - HMPREF1078_RS07705 0.76 -3.3 84,312 - HMPREF1078_RS07705 0.76 -2.9 84,312 - HMPREF1078_RS07705 0.76 -3.3 84,312 - HMPREF1078_RS07705 0.76 -2.5 84,316 - HMPREF1078_RS07705 0.76 -2.9 84,316 - HMPREF1078_RS07705 0.76 -1.8 84,318 - HMPREF1078_RS07705 0.76 -2.2 84,436 - HMPREF1078_RS07705 0.85 -2.7 84,438 - HMPREF1078_RS07705 0.85 -2.4 84,441 - HMPREF1078_RS07705 0.85 -3.3 84,453 - HMPREF1078_RS07705 0.86 -3.2 84,519 - -3.5 84,519 - -2.9 84,519 - -1.1 84,574 - -2.6 84,607 - -0.8 84,620 - +0.1 84,620 - -0.6 84,620 - -3.5 84,620 - -3.5 84,620 - -3.1 84,624 - -0.9 84,624 - -2.1 85,241 - +0.8 85,356 + +0.9 85,359 + +1.0 85,359 + -0.2 85,359 + +0.8 85,360 - +0.8 85,360 - +0.0 85,364 + +1.4 85,381 - -2.2 85,385 + +1.9 85,385 + +0.3 85,385 + +1.3 85,385 + +0.2 85,385 + -2.7 85,385 + -0.9 85,386 - -0.6 85,386 - -0.0 85,392 + -0.0 85,394 + -1.1 85,396 - -1.3 85,404 + +0.7 85,417 + -0.4 85,443 + +0.5 85,493 + +0.4 85,493 + +0.8 85,494 - +1.2 85,535 + +3.0 85,535 + -0.2 85,551 + +0.1 85,580 + -1.1 85,581 - -1.5 85,581 - +1.1
Or see this region's nucleotide sequence