Experiment: D-Mannose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS07600 and HMPREF1078_RS07605 are separated by 36 nucleotides HMPREF1078_RS07605 and HMPREF1078_RS07610 are separated by 57 nucleotides HMPREF1078_RS07610 and HMPREF1078_RS07615 are separated by 49 nucleotides HMPREF1078_RS07615 and HMPREF1078_RS07620 are separated by 259 nucleotides
HMPREF1078_RS07600: HMPREF1078_RS07600 - YqgE/AlgH family protein, at 56,161 to 56,757
_RS07600
HMPREF1078_RS07605: HMPREF1078_RS07605 - GNAT family N-acetyltransferase, at 56,794 to 57,327
_RS07605
HMPREF1078_RS07610: HMPREF1078_RS07610 - glycosyltransferase family 2 protein, at 57,385 to 58,542
_RS07610
HMPREF1078_RS07615: HMPREF1078_RS07615 - recombination mediator RecR, at 58,592 to 59,215
_RS07615
HMPREF1078_RS07620: HMPREF1078_RS07620 - oligopeptide transporter, OPT family, at 59,475 to 61,475
_RS07620
Position (kb) 57
58
59 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 56.450 kb on + strand, within HMPREF1078_RS07600 at 56.451 kb on - strand, within HMPREF1078_RS07600 at 56.451 kb on - strand, within HMPREF1078_RS07600 at 56.451 kb on - strand, within HMPREF1078_RS07600 at 56.460 kb on + strand, within HMPREF1078_RS07600 at 56.461 kb on - strand, within HMPREF1078_RS07600 at 56.475 kb on - strand, within HMPREF1078_RS07600 at 56.516 kb on + strand, within HMPREF1078_RS07600 at 56.516 kb on + strand, within HMPREF1078_RS07600 at 56.516 kb on + strand, within HMPREF1078_RS07600 at 56.516 kb on + strand, within HMPREF1078_RS07600 at 56.517 kb on - strand, within HMPREF1078_RS07600 at 56.517 kb on - strand, within HMPREF1078_RS07600 at 56.517 kb on - strand, within HMPREF1078_RS07600 at 56.517 kb on - strand, within HMPREF1078_RS07600 at 56.517 kb on - strand, within HMPREF1078_RS07600 at 56.517 kb on - strand, within HMPREF1078_RS07600 at 56.521 kb on + strand, within HMPREF1078_RS07600 at 56.521 kb on + strand, within HMPREF1078_RS07600 at 56.521 kb on + strand, within HMPREF1078_RS07600 at 56.521 kb on + strand, within HMPREF1078_RS07600 at 56.522 kb on - strand, within HMPREF1078_RS07600 at 56.524 kb on - strand, within HMPREF1078_RS07600 at 56.568 kb on - strand, within HMPREF1078_RS07600 at 56.609 kb on + strand, within HMPREF1078_RS07600 at 56.629 kb on + strand, within HMPREF1078_RS07600 at 56.630 kb on + strand, within HMPREF1078_RS07600 at 56.658 kb on - strand, within HMPREF1078_RS07600 at 56.713 kb on + strand at 56.714 kb on - strand at 56.755 kb on + strand at 56.770 kb on + strand at 56.781 kb on - strand at 56.850 kb on + strand, within HMPREF1078_RS07605 at 56.872 kb on + strand, within HMPREF1078_RS07605 at 56.872 kb on + strand, within HMPREF1078_RS07605 at 56.872 kb on + strand, within HMPREF1078_RS07605 at 56.873 kb on - strand, within HMPREF1078_RS07605 at 56.873 kb on - strand, within HMPREF1078_RS07605 at 56.873 kb on - strand, within HMPREF1078_RS07605 at 56.874 kb on + strand, within HMPREF1078_RS07605 at 56.875 kb on - strand, within HMPREF1078_RS07605 at 56.926 kb on - strand, within HMPREF1078_RS07605 at 57.081 kb on - strand, within HMPREF1078_RS07605 at 57.096 kb on + strand, within HMPREF1078_RS07605 at 57.158 kb on - strand, within HMPREF1078_RS07605 at 57.178 kb on + strand, within HMPREF1078_RS07605 at 57.179 kb on - strand, within HMPREF1078_RS07605 at 57.180 kb on + strand, within HMPREF1078_RS07605 at 57.180 kb on + strand, within HMPREF1078_RS07605 at 57.181 kb on - strand, within HMPREF1078_RS07605 at 57.181 kb on - strand, within HMPREF1078_RS07605 at 57.181 kb on - strand, within HMPREF1078_RS07605 at 57.207 kb on - strand, within HMPREF1078_RS07605 at 57.260 kb on + strand, within HMPREF1078_RS07605 at 57.356 kb on + strand at 57.397 kb on + strand at 57.398 kb on - strand at 57.414 kb on + strand at 57.414 kb on + strand at 57.414 kb on + strand at 57.415 kb on - strand at 57.415 kb on - strand at 57.419 kb on - strand at 57.419 kb on - strand at 57.419 kb on - strand at 57.419 kb on - strand at 57.419 kb on - strand at 57.419 kb on - strand at 57.420 kb on + strand at 57.425 kb on + strand at 57.425 kb on + strand at 57.425 kb on + strand at 57.426 kb on - strand at 57.460 kb on + strand at 57.510 kb on + strand, within HMPREF1078_RS07610 at 57.540 kb on + strand, within HMPREF1078_RS07610 at 57.540 kb on + strand, within HMPREF1078_RS07610 at 57.540 kb on + strand, within HMPREF1078_RS07610 at 57.541 kb on - strand, within HMPREF1078_RS07610 at 57.541 kb on - strand, within HMPREF1078_RS07610 at 57.541 kb on - strand, within HMPREF1078_RS07610 at 57.584 kb on + strand, within HMPREF1078_RS07610 at 57.584 kb on + strand, within HMPREF1078_RS07610 at 57.585 kb on - strand, within HMPREF1078_RS07610 at 57.785 kb on + strand, within HMPREF1078_RS07610 at 57.796 kb on + strand, within HMPREF1078_RS07610 at 57.815 kb on + strand, within HMPREF1078_RS07610 at 57.830 kb on + strand, within HMPREF1078_RS07610 at 57.831 kb on - strand, within HMPREF1078_RS07610 at 57.831 kb on - strand, within HMPREF1078_RS07610 at 57.865 kb on - strand, within HMPREF1078_RS07610 at 57.891 kb on - strand, within HMPREF1078_RS07610 at 57.893 kb on + strand, within HMPREF1078_RS07610 at 57.948 kb on - strand, within HMPREF1078_RS07610 at 57.948 kb on - strand, within HMPREF1078_RS07610 at 57.952 kb on - strand, within HMPREF1078_RS07610 at 57.981 kb on + strand, within HMPREF1078_RS07610 at 58.035 kb on + strand, within HMPREF1078_RS07610 at 58.036 kb on - strand, within HMPREF1078_RS07610 at 58.058 kb on + strand, within HMPREF1078_RS07610 at 58.299 kb on - strand, within HMPREF1078_RS07610 at 58.401 kb on - strand, within HMPREF1078_RS07610 at 58.442 kb on - strand at 58.442 kb on - strand at 58.442 kb on - strand at 58.442 kb on - strand at 58.462 kb on + strand at 58.514 kb on + strand at 58.525 kb on + strand at 58.526 kb on - strand at 58.528 kb on - strand at 58.528 kb on - strand at 58.570 kb on + strand at 58.578 kb on - strand at 58.582 kb on + strand at 58.585 kb on - strand at 58.585 kb on - strand at 58.662 kb on + strand, within HMPREF1078_RS07615 at 58.719 kb on + strand, within HMPREF1078_RS07615 at 58.719 kb on + strand, within HMPREF1078_RS07615 at 58.720 kb on - strand, within HMPREF1078_RS07615 at 58.738 kb on - strand, within HMPREF1078_RS07615 at 58.824 kb on - strand, within HMPREF1078_RS07615 at 58.856 kb on + strand, within HMPREF1078_RS07615 at 58.857 kb on - strand, within HMPREF1078_RS07615 at 58.876 kb on + strand, within HMPREF1078_RS07615 at 58.897 kb on - strand, within HMPREF1078_RS07615 at 58.996 kb on + strand, within HMPREF1078_RS07615 at 58.997 kb on - strand, within HMPREF1078_RS07615 at 59.018 kb on + strand, within HMPREF1078_RS07615 at 59.018 kb on + strand, within HMPREF1078_RS07615 at 59.019 kb on - strand, within HMPREF1078_RS07615 at 59.019 kb on - strand, within HMPREF1078_RS07615 at 59.019 kb on - strand, within HMPREF1078_RS07615 at 59.020 kb on + strand, within HMPREF1078_RS07615 at 59.021 kb on - strand, within HMPREF1078_RS07615 at 59.035 kb on + strand, within HMPREF1078_RS07615 at 59.263 kb on - strand at 59.265 kb on - strand at 59.284 kb on - strand at 59.340 kb on + strand at 59.341 kb on - strand at 59.342 kb on + strand at 59.342 kb on + strand at 59.371 kb on + strand at 59.423 kb on + strand at 59.429 kb on - strand at 59.442 kb on + strand at 59.445 kb on - strand at 59.445 kb on - strand at 59.461 kb on + strand at 59.467 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mg/mL (C) remove 56,450 + HMPREF1078_RS07600 0.48 +0.1 56,451 - HMPREF1078_RS07600 0.49 -0.0 56,451 - HMPREF1078_RS07600 0.49 -1.1 56,451 - HMPREF1078_RS07600 0.49 -1.1 56,460 + HMPREF1078_RS07600 0.50 +0.0 56,461 - HMPREF1078_RS07600 0.50 +0.7 56,475 - HMPREF1078_RS07600 0.53 -0.9 56,516 + HMPREF1078_RS07600 0.59 +3.4 56,516 + HMPREF1078_RS07600 0.59 -0.5 56,516 + HMPREF1078_RS07600 0.59 -1.4 56,516 + HMPREF1078_RS07600 0.59 -2.6 56,517 - HMPREF1078_RS07600 0.60 -0.5 56,517 - HMPREF1078_RS07600 0.60 +0.0 56,517 - HMPREF1078_RS07600 0.60 +1.8 56,517 - HMPREF1078_RS07600 0.60 +0.4 56,517 - HMPREF1078_RS07600 0.60 -1.2 56,517 - HMPREF1078_RS07600 0.60 -0.2 56,521 + HMPREF1078_RS07600 0.60 +0.4 56,521 + HMPREF1078_RS07600 0.60 +0.8 56,521 + HMPREF1078_RS07600 0.60 -1.5 56,521 + HMPREF1078_RS07600 0.60 -1.0 56,522 - HMPREF1078_RS07600 0.60 -1.4 56,524 - HMPREF1078_RS07600 0.61 -1.1 56,568 - HMPREF1078_RS07600 0.68 +0.8 56,609 + HMPREF1078_RS07600 0.75 -1.9 56,629 + HMPREF1078_RS07600 0.78 -1.8 56,630 + HMPREF1078_RS07600 0.79 -1.7 56,658 - HMPREF1078_RS07600 0.83 +0.2 56,713 + -0.6 56,714 - -0.3 56,755 + +0.7 56,770 + +0.3 56,781 - +0.8 56,850 + HMPREF1078_RS07605 0.10 +0.3 56,872 + HMPREF1078_RS07605 0.15 +0.2 56,872 + HMPREF1078_RS07605 0.15 -0.5 56,872 + HMPREF1078_RS07605 0.15 -0.4 56,873 - HMPREF1078_RS07605 0.15 -2.1 56,873 - HMPREF1078_RS07605 0.15 -2.0 56,873 - HMPREF1078_RS07605 0.15 -1.4 56,874 + HMPREF1078_RS07605 0.15 -1.2 56,875 - HMPREF1078_RS07605 0.15 -1.9 56,926 - HMPREF1078_RS07605 0.25 -1.3 57,081 - HMPREF1078_RS07605 0.54 -1.6 57,096 + HMPREF1078_RS07605 0.57 -0.7 57,158 - HMPREF1078_RS07605 0.68 -0.9 57,178 + HMPREF1078_RS07605 0.72 -0.9 57,179 - HMPREF1078_RS07605 0.72 -0.5 57,180 + HMPREF1078_RS07605 0.72 +0.2 57,180 + HMPREF1078_RS07605 0.72 -0.9 57,181 - HMPREF1078_RS07605 0.72 +0.8 57,181 - HMPREF1078_RS07605 0.72 -1.1 57,181 - HMPREF1078_RS07605 0.72 +0.9 57,207 - HMPREF1078_RS07605 0.77 -0.3 57,260 + HMPREF1078_RS07605 0.87 +2.4 57,356 + -0.0 57,397 + +0.1 57,398 - +0.2 57,414 + -2.6 57,414 + -2.6 57,414 + -1.4 57,415 - -0.4 57,415 - -1.2 57,419 - -0.8 57,419 - -2.6 57,419 - -2.8 57,419 - -3.7 57,419 - -1.9 57,419 - +0.4 57,420 + -4.1 57,425 + -3.5 57,425 + -1.9 57,425 + -0.8 57,426 - -1.3 57,460 + -0.8 57,510 + HMPREF1078_RS07610 0.11 -4.2 57,540 + HMPREF1078_RS07610 0.13 -3.3 57,540 + HMPREF1078_RS07610 0.13 -1.4 57,540 + HMPREF1078_RS07610 0.13 -1.1 57,541 - HMPREF1078_RS07610 0.13 -0.9 57,541 - HMPREF1078_RS07610 0.13 -2.4 57,541 - HMPREF1078_RS07610 0.13 -1.9 57,584 + HMPREF1078_RS07610 0.17 -2.2 57,584 + HMPREF1078_RS07610 0.17 -2.1 57,585 - HMPREF1078_RS07610 0.17 -3.8 57,785 + HMPREF1078_RS07610 0.35 -1.7 57,796 + HMPREF1078_RS07610 0.35 -2.3 57,815 + HMPREF1078_RS07610 0.37 -3.0 57,830 + HMPREF1078_RS07610 0.38 -1.9 57,831 - HMPREF1078_RS07610 0.39 -0.2 57,831 - HMPREF1078_RS07610 0.39 -1.3 57,865 - HMPREF1078_RS07610 0.41 -2.5 57,891 - HMPREF1078_RS07610 0.44 -2.2 57,893 + HMPREF1078_RS07610 0.44 -1.3 57,948 - HMPREF1078_RS07610 0.49 -1.9 57,948 - HMPREF1078_RS07610 0.49 -3.0 57,952 - HMPREF1078_RS07610 0.49 -2.1 57,981 + HMPREF1078_RS07610 0.51 -1.6 58,035 + HMPREF1078_RS07610 0.56 -2.6 58,036 - HMPREF1078_RS07610 0.56 -1.6 58,058 + HMPREF1078_RS07610 0.58 -2.4 58,299 - HMPREF1078_RS07610 0.79 -3.8 58,401 - HMPREF1078_RS07610 0.88 -1.2 58,442 - -2.3 58,442 - -2.4 58,442 - -4.7 58,442 - -0.6 58,462 + -1.1 58,514 + -2.7 58,525 + -3.5 58,526 - -2.7 58,528 - -1.1 58,528 - -4.5 58,570 + -4.3 58,578 - +1.4 58,582 + -2.1 58,585 - -0.8 58,585 - +0.7 58,662 + HMPREF1078_RS07615 0.11 -2.6 58,719 + HMPREF1078_RS07615 0.20 -1.2 58,719 + HMPREF1078_RS07615 0.20 -1.8 58,720 - HMPREF1078_RS07615 0.21 -0.2 58,738 - HMPREF1078_RS07615 0.23 +0.3 58,824 - HMPREF1078_RS07615 0.37 -0.3 58,856 + HMPREF1078_RS07615 0.42 -1.9 58,857 - HMPREF1078_RS07615 0.42 -1.1 58,876 + HMPREF1078_RS07615 0.46 -3.5 58,897 - HMPREF1078_RS07615 0.49 +1.2 58,996 + HMPREF1078_RS07615 0.65 -1.4 58,997 - HMPREF1078_RS07615 0.65 +0.0 59,018 + HMPREF1078_RS07615 0.68 +0.8 59,018 + HMPREF1078_RS07615 0.68 +0.8 59,019 - HMPREF1078_RS07615 0.68 -1.0 59,019 - HMPREF1078_RS07615 0.68 +1.1 59,019 - HMPREF1078_RS07615 0.68 +0.2 59,020 + HMPREF1078_RS07615 0.69 -1.5 59,021 - HMPREF1078_RS07615 0.69 -0.3 59,035 + HMPREF1078_RS07615 0.71 -1.3 59,263 - +0.6 59,265 - -0.0 59,284 - -1.4 59,340 + +0.4 59,341 - -1.9 59,342 + -0.8 59,342 + +0.5 59,371 + +1.0 59,423 + -0.7 59,429 - +2.0 59,442 + +1.2 59,445 - -0.0 59,445 - -1.6 59,461 + +0.8 59,467 + +0.1
Or see this region's nucleotide sequence