Experiment: D-Mannose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS07315 and HMPREF1078_RS07320 are separated by 106 nucleotides HMPREF1078_RS07320 and HMPREF1078_RS07325 are separated by 28 nucleotides HMPREF1078_RS07325 and HMPREF1078_RS07330 are separated by 175 nucleotides
HMPREF1078_RS07315: HMPREF1078_RS07315 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 892,636 to 893,802
_RS07315
HMPREF1078_RS07320: HMPREF1078_RS07320 - Gfo/Idh/MocA family oxidoreductase, at 893,909 to 894,925
_RS07320
HMPREF1078_RS07325: HMPREF1078_RS07325 - Lrp/AsnC family transcriptional regulator, at 894,954 to 895,424
_RS07325
HMPREF1078_RS07330: HMPREF1078_RS07330 - O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase, at 895,600 to 896,889
_RS07330
Position (kb) 893
894
895 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 892.969 kb on - strand, within HMPREF1078_RS07315 at 892.969 kb on - strand, within HMPREF1078_RS07315 at 892.977 kb on + strand, within HMPREF1078_RS07315 at 892.978 kb on - strand, within HMPREF1078_RS07315 at 893.074 kb on - strand, within HMPREF1078_RS07315 at 893.101 kb on + strand, within HMPREF1078_RS07315 at 893.101 kb on + strand, within HMPREF1078_RS07315 at 893.101 kb on + strand, within HMPREF1078_RS07315 at 893.101 kb on + strand, within HMPREF1078_RS07315 at 893.101 kb on + strand, within HMPREF1078_RS07315 at 893.101 kb on + strand, within HMPREF1078_RS07315 at 893.101 kb on - strand, within HMPREF1078_RS07315 at 893.102 kb on - strand, within HMPREF1078_RS07315 at 893.102 kb on - strand, within HMPREF1078_RS07315 at 893.102 kb on - strand, within HMPREF1078_RS07315 at 893.105 kb on + strand, within HMPREF1078_RS07315 at 893.187 kb on + strand, within HMPREF1078_RS07315 at 893.187 kb on + strand, within HMPREF1078_RS07315 at 893.317 kb on + strand, within HMPREF1078_RS07315 at 893.318 kb on - strand, within HMPREF1078_RS07315 at 893.507 kb on - strand, within HMPREF1078_RS07315 at 893.517 kb on + strand, within HMPREF1078_RS07315 at 893.517 kb on + strand, within HMPREF1078_RS07315 at 893.528 kb on + strand, within HMPREF1078_RS07315 at 893.593 kb on + strand, within HMPREF1078_RS07315 at 893.635 kb on - strand, within HMPREF1078_RS07315 at 893.635 kb on - strand, within HMPREF1078_RS07315 at 893.646 kb on - strand, within HMPREF1078_RS07315 at 893.700 kb on + strand at 893.735 kb on - strand at 893.735 kb on - strand at 893.735 kb on - strand at 893.735 kb on - strand at 893.736 kb on + strand at 893.821 kb on - strand at 893.835 kb on + strand at 894.050 kb on + strand, within HMPREF1078_RS07320 at 894.084 kb on + strand, within HMPREF1078_RS07320 at 894.085 kb on - strand, within HMPREF1078_RS07320 at 894.114 kb on + strand, within HMPREF1078_RS07320 at 894.114 kb on + strand, within HMPREF1078_RS07320 at 894.125 kb on - strand, within HMPREF1078_RS07320 at 894.236 kb on + strand, within HMPREF1078_RS07320 at 894.236 kb on + strand, within HMPREF1078_RS07320 at 894.236 kb on + strand, within HMPREF1078_RS07320 at 894.236 kb on + strand, within HMPREF1078_RS07320 at 894.237 kb on - strand, within HMPREF1078_RS07320 at 894.331 kb on + strand, within HMPREF1078_RS07320 at 894.337 kb on - strand, within HMPREF1078_RS07320 at 894.347 kb on + strand, within HMPREF1078_RS07320 at 894.348 kb on - strand, within HMPREF1078_RS07320 at 894.349 kb on + strand, within HMPREF1078_RS07320 at 894.350 kb on - strand, within HMPREF1078_RS07320 at 894.390 kb on - strand, within HMPREF1078_RS07320 at 894.394 kb on + strand, within HMPREF1078_RS07320 at 894.472 kb on + strand, within HMPREF1078_RS07320 at 894.472 kb on + strand, within HMPREF1078_RS07320 at 894.473 kb on - strand, within HMPREF1078_RS07320 at 894.476 kb on + strand, within HMPREF1078_RS07320 at 894.476 kb on + strand, within HMPREF1078_RS07320 at 894.476 kb on + strand, within HMPREF1078_RS07320 at 894.477 kb on - strand, within HMPREF1078_RS07320 at 894.492 kb on + strand, within HMPREF1078_RS07320 at 894.609 kb on - strand, within HMPREF1078_RS07320 at 894.647 kb on - strand, within HMPREF1078_RS07320 at 894.647 kb on - strand, within HMPREF1078_RS07320 at 894.647 kb on - strand, within HMPREF1078_RS07320 at 894.692 kb on + strand, within HMPREF1078_RS07320 at 894.693 kb on - strand, within HMPREF1078_RS07320 at 894.694 kb on + strand, within HMPREF1078_RS07320 at 894.695 kb on - strand, within HMPREF1078_RS07320 at 894.695 kb on - strand, within HMPREF1078_RS07320 at 894.780 kb on - strand, within HMPREF1078_RS07320 at 894.781 kb on - strand, within HMPREF1078_RS07320 at 894.782 kb on - strand, within HMPREF1078_RS07320 at 894.856 kb on + strand at 894.857 kb on - strand at 894.859 kb on + strand at 894.870 kb on + strand at 894.871 kb on - strand at 894.912 kb on - strand at 894.912 kb on - strand at 894.923 kb on + strand at 894.924 kb on - strand at 894.924 kb on - strand at 894.926 kb on + strand at 894.927 kb on - strand at 894.937 kb on + strand at 894.960 kb on - strand at 895.036 kb on - strand, within HMPREF1078_RS07325 at 895.049 kb on + strand, within HMPREF1078_RS07325 at 895.061 kb on - strand, within HMPREF1078_RS07325 at 895.063 kb on + strand, within HMPREF1078_RS07325 at 895.072 kb on + strand, within HMPREF1078_RS07325 at 895.102 kb on + strand, within HMPREF1078_RS07325 at 895.103 kb on - strand, within HMPREF1078_RS07325 at 895.113 kb on + strand, within HMPREF1078_RS07325 at 895.115 kb on + strand, within HMPREF1078_RS07325 at 895.115 kb on + strand, within HMPREF1078_RS07325 at 895.115 kb on + strand, within HMPREF1078_RS07325 at 895.115 kb on + strand, within HMPREF1078_RS07325 at 895.115 kb on + strand, within HMPREF1078_RS07325 at 895.116 kb on - strand, within HMPREF1078_RS07325 at 895.116 kb on - strand, within HMPREF1078_RS07325 at 895.116 kb on - strand, within HMPREF1078_RS07325 at 895.120 kb on + strand, within HMPREF1078_RS07325 at 895.120 kb on + strand, within HMPREF1078_RS07325 at 895.121 kb on - strand, within HMPREF1078_RS07325 at 895.258 kb on + strand, within HMPREF1078_RS07325 at 895.267 kb on - strand, within HMPREF1078_RS07325 at 895.267 kb on - strand, within HMPREF1078_RS07325 at 895.267 kb on - strand, within HMPREF1078_RS07325 at 895.267 kb on - strand, within HMPREF1078_RS07325 at 895.268 kb on + strand, within HMPREF1078_RS07325 at 895.269 kb on - strand, within HMPREF1078_RS07325 at 895.269 kb on - strand, within HMPREF1078_RS07325 at 895.270 kb on + strand, within HMPREF1078_RS07325 at 895.270 kb on + strand, within HMPREF1078_RS07325 at 895.271 kb on - strand, within HMPREF1078_RS07325 at 895.377 kb on - strand, within HMPREF1078_RS07325 at 895.395 kb on + strand at 895.424 kb on + strand at 895.464 kb on + strand at 895.522 kb on + strand at 895.524 kb on + strand at 895.552 kb on - strand at 895.552 kb on - strand at 895.586 kb on - strand at 895.593 kb on + strand at 895.631 kb on + strand at 895.632 kb on - strand at 895.643 kb on + strand at 895.643 kb on + strand at 895.689 kb on + strand at 895.690 kb on - strand at 895.709 kb on - strand at 895.712 kb on + strand at 895.712 kb on + strand at 895.713 kb on - strand at 895.713 kb on - strand at 895.772 kb on - strand, within HMPREF1078_RS07330 at 895.879 kb on + strand, within HMPREF1078_RS07330 at 895.880 kb on - strand, within HMPREF1078_RS07330 at 895.880 kb on - strand, within HMPREF1078_RS07330 at 895.880 kb on - strand, within HMPREF1078_RS07330 at 895.893 kb on + strand, within HMPREF1078_RS07330 at 895.894 kb on - strand, within HMPREF1078_RS07330
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mg/mL (C) remove 892,969 - HMPREF1078_RS07315 0.29 -3.2 892,969 - HMPREF1078_RS07315 0.29 -4.8 892,977 + HMPREF1078_RS07315 0.29 -4.4 892,978 - HMPREF1078_RS07315 0.29 -2.5 893,074 - HMPREF1078_RS07315 0.38 -3.7 893,101 + HMPREF1078_RS07315 0.40 -3.1 893,101 + HMPREF1078_RS07315 0.40 -3.1 893,101 + HMPREF1078_RS07315 0.40 -2.5 893,101 + HMPREF1078_RS07315 0.40 -2.9 893,101 + HMPREF1078_RS07315 0.40 -4.0 893,101 + HMPREF1078_RS07315 0.40 -2.8 893,101 - HMPREF1078_RS07315 0.40 -2.6 893,102 - HMPREF1078_RS07315 0.40 -1.3 893,102 - HMPREF1078_RS07315 0.40 -2.4 893,102 - HMPREF1078_RS07315 0.40 -3.9 893,105 + HMPREF1078_RS07315 0.40 -3.4 893,187 + HMPREF1078_RS07315 0.47 -5.2 893,187 + HMPREF1078_RS07315 0.47 -1.2 893,317 + HMPREF1078_RS07315 0.58 -3.2 893,318 - HMPREF1078_RS07315 0.58 -3.6 893,507 - HMPREF1078_RS07315 0.75 -2.6 893,517 + HMPREF1078_RS07315 0.75 -3.9 893,517 + HMPREF1078_RS07315 0.75 -3.5 893,528 + HMPREF1078_RS07315 0.76 -2.9 893,593 + HMPREF1078_RS07315 0.82 -2.3 893,635 - HMPREF1078_RS07315 0.86 -3.3 893,635 - HMPREF1078_RS07315 0.86 -3.8 893,646 - HMPREF1078_RS07315 0.87 -3.4 893,700 + -3.5 893,735 - -1.9 893,735 - -3.9 893,735 - -1.5 893,735 - -3.1 893,736 + -2.3 893,821 - -2.9 893,835 + -0.8 894,050 + HMPREF1078_RS07320 0.14 -2.1 894,084 + HMPREF1078_RS07320 0.17 -1.3 894,085 - HMPREF1078_RS07320 0.17 -4.9 894,114 + HMPREF1078_RS07320 0.20 -0.5 894,114 + HMPREF1078_RS07320 0.20 -5.1 894,125 - HMPREF1078_RS07320 0.21 -4.1 894,236 + HMPREF1078_RS07320 0.32 -4.0 894,236 + HMPREF1078_RS07320 0.32 -3.6 894,236 + HMPREF1078_RS07320 0.32 -1.8 894,236 + HMPREF1078_RS07320 0.32 -3.4 894,237 - HMPREF1078_RS07320 0.32 -2.8 894,331 + HMPREF1078_RS07320 0.41 -5.0 894,337 - HMPREF1078_RS07320 0.42 -2.7 894,347 + HMPREF1078_RS07320 0.43 -4.5 894,348 - HMPREF1078_RS07320 0.43 -4.3 894,349 + HMPREF1078_RS07320 0.43 -2.3 894,350 - HMPREF1078_RS07320 0.43 -2.2 894,390 - HMPREF1078_RS07320 0.47 -2.1 894,394 + HMPREF1078_RS07320 0.48 -1.6 894,472 + HMPREF1078_RS07320 0.55 -2.5 894,472 + HMPREF1078_RS07320 0.55 -2.3 894,473 - HMPREF1078_RS07320 0.55 -4.3 894,476 + HMPREF1078_RS07320 0.56 -1.6 894,476 + HMPREF1078_RS07320 0.56 -4.5 894,476 + HMPREF1078_RS07320 0.56 -2.4 894,477 - HMPREF1078_RS07320 0.56 -4.1 894,492 + HMPREF1078_RS07320 0.57 -3.1 894,609 - HMPREF1078_RS07320 0.69 -2.4 894,647 - HMPREF1078_RS07320 0.73 -0.7 894,647 - HMPREF1078_RS07320 0.73 -3.0 894,647 - HMPREF1078_RS07320 0.73 -3.7 894,692 + HMPREF1078_RS07320 0.77 -2.4 894,693 - HMPREF1078_RS07320 0.77 -1.7 894,694 + HMPREF1078_RS07320 0.77 -2.7 894,695 - HMPREF1078_RS07320 0.77 -1.0 894,695 - HMPREF1078_RS07320 0.77 -3.6 894,780 - HMPREF1078_RS07320 0.86 -4.6 894,781 - HMPREF1078_RS07320 0.86 -4.4 894,782 - HMPREF1078_RS07320 0.86 -4.2 894,856 + -3.8 894,857 - -4.3 894,859 + -4.2 894,870 + -3.7 894,871 - -3.4 894,912 - -2.1 894,912 - -3.0 894,923 + +0.6 894,924 - +0.6 894,924 - +0.0 894,926 + -1.1 894,927 - -0.7 894,937 + +0.8 894,960 - -0.7 895,036 - HMPREF1078_RS07325 0.17 -0.5 895,049 + HMPREF1078_RS07325 0.20 -0.0 895,061 - HMPREF1078_RS07325 0.23 -0.3 895,063 + HMPREF1078_RS07325 0.23 +0.8 895,072 + HMPREF1078_RS07325 0.25 -0.5 895,102 + HMPREF1078_RS07325 0.31 -0.1 895,103 - HMPREF1078_RS07325 0.32 -0.4 895,113 + HMPREF1078_RS07325 0.34 +1.7 895,115 + HMPREF1078_RS07325 0.34 +0.5 895,115 + HMPREF1078_RS07325 0.34 -0.7 895,115 + HMPREF1078_RS07325 0.34 +0.9 895,115 + HMPREF1078_RS07325 0.34 +0.1 895,115 + HMPREF1078_RS07325 0.34 -0.5 895,116 - HMPREF1078_RS07325 0.34 +0.9 895,116 - HMPREF1078_RS07325 0.34 -1.6 895,116 - HMPREF1078_RS07325 0.34 -0.4 895,120 + HMPREF1078_RS07325 0.35 -0.1 895,120 + HMPREF1078_RS07325 0.35 -0.0 895,121 - HMPREF1078_RS07325 0.35 +0.5 895,258 + HMPREF1078_RS07325 0.65 -1.1 895,267 - HMPREF1078_RS07325 0.66 +1.0 895,267 - HMPREF1078_RS07325 0.66 +0.7 895,267 - HMPREF1078_RS07325 0.66 -0.9 895,267 - HMPREF1078_RS07325 0.66 -0.8 895,268 + HMPREF1078_RS07325 0.67 -2.6 895,269 - HMPREF1078_RS07325 0.67 +0.0 895,269 - HMPREF1078_RS07325 0.67 -0.4 895,270 + HMPREF1078_RS07325 0.67 +0.0 895,270 + HMPREF1078_RS07325 0.67 +0.7 895,271 - HMPREF1078_RS07325 0.67 -0.1 895,377 - HMPREF1078_RS07325 0.90 -0.3 895,395 + +0.8 895,424 + +0.3 895,464 + -0.2 895,522 + -0.5 895,524 + -0.9 895,552 - +0.7 895,552 - +1.5 895,586 - +0.2 895,593 + -0.6 895,631 + +0.1 895,632 - +0.2 895,643 + +1.5 895,643 + -0.2 895,689 + -0.3 895,690 - +0.6 895,709 - -1.0 895,712 + +0.1 895,712 + +1.2 895,713 - +0.3 895,713 - +0.1 895,772 - HMPREF1078_RS07330 0.13 -0.2 895,879 + HMPREF1078_RS07330 0.22 +0.6 895,880 - HMPREF1078_RS07330 0.22 -0.3 895,880 - HMPREF1078_RS07330 0.22 +0.6 895,880 - HMPREF1078_RS07330 0.22 +0.2 895,893 + HMPREF1078_RS07330 0.23 -0.3 895,894 - HMPREF1078_RS07330 0.23 -0.1
Or see this region's nucleotide sequence