Experiment: D-Mannose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS07210 and HMPREF1078_RS07215 are separated by 89 nucleotides HMPREF1078_RS07215 and HMPREF1078_RS07220 are separated by 3 nucleotides
HMPREF1078_RS07210: HMPREF1078_RS07210 - alanine dehydrogenase, at 864,104 to 865,303
_RS07210
HMPREF1078_RS07215: HMPREF1078_RS07215 - 2-oxoacid:acceptor oxidoreductase subunit alpha, at 865,393 to 867,249
_RS07215
HMPREF1078_RS07220: HMPREF1078_RS07220 - 2-oxoacid:ferredoxin oxidoreductase subunit beta, at 867,253 to 868,269
_RS07220
Position (kb) 865
866
867
868 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 864.436 kb on + strand, within HMPREF1078_RS07210 at 864.439 kb on + strand, within HMPREF1078_RS07210 at 864.439 kb on + strand, within HMPREF1078_RS07210 at 864.524 kb on + strand, within HMPREF1078_RS07210 at 864.628 kb on + strand, within HMPREF1078_RS07210 at 864.628 kb on + strand, within HMPREF1078_RS07210 at 864.775 kb on + strand, within HMPREF1078_RS07210 at 864.776 kb on - strand, within HMPREF1078_RS07210 at 864.804 kb on + strand, within HMPREF1078_RS07210 at 864.896 kb on + strand, within HMPREF1078_RS07210 at 864.919 kb on + strand, within HMPREF1078_RS07210 at 864.920 kb on - strand, within HMPREF1078_RS07210 at 864.935 kb on - strand, within HMPREF1078_RS07210 at 864.963 kb on + strand, within HMPREF1078_RS07210 at 864.967 kb on + strand, within HMPREF1078_RS07210 at 865.100 kb on - strand, within HMPREF1078_RS07210 at 865.123 kb on + strand, within HMPREF1078_RS07210 at 865.123 kb on + strand, within HMPREF1078_RS07210 at 865.211 kb on + strand at 865.211 kb on + strand at 865.212 kb on - strand at 865.212 kb on - strand at 865.218 kb on - strand at 865.285 kb on - strand at 865.286 kb on + strand at 865.287 kb on - strand at 865.339 kb on + strand at 865.381 kb on + strand at 865.383 kb on + strand at 865.384 kb on - strand at 865.384 kb on - strand at 865.384 kb on - strand at 865.384 kb on - strand at 865.387 kb on + strand at 865.387 kb on + strand at 865.387 kb on + strand at 865.387 kb on + strand at 865.388 kb on - strand at 865.390 kb on - strand at 865.392 kb on + strand at 865.573 kb on - strand at 865.580 kb on + strand, within HMPREF1078_RS07215 at 865.581 kb on - strand, within HMPREF1078_RS07215 at 865.822 kb on - strand, within HMPREF1078_RS07215 at 865.887 kb on + strand, within HMPREF1078_RS07215 at 865.887 kb on + strand, within HMPREF1078_RS07215 at 865.888 kb on - strand, within HMPREF1078_RS07215 at 865.894 kb on - strand, within HMPREF1078_RS07215 at 866.023 kb on + strand, within HMPREF1078_RS07215 at 866.029 kb on + strand, within HMPREF1078_RS07215 at 866.029 kb on + strand, within HMPREF1078_RS07215 at 866.040 kb on + strand, within HMPREF1078_RS07215 at 866.041 kb on - strand, within HMPREF1078_RS07215 at 866.118 kb on + strand, within HMPREF1078_RS07215 at 866.118 kb on + strand, within HMPREF1078_RS07215 at 866.118 kb on + strand, within HMPREF1078_RS07215 at 866.119 kb on - strand, within HMPREF1078_RS07215 at 866.165 kb on + strand, within HMPREF1078_RS07215 at 866.166 kb on - strand, within HMPREF1078_RS07215 at 866.232 kb on + strand, within HMPREF1078_RS07215 at 866.286 kb on + strand, within HMPREF1078_RS07215 at 866.439 kb on + strand, within HMPREF1078_RS07215 at 866.583 kb on + strand, within HMPREF1078_RS07215 at 866.583 kb on + strand, within HMPREF1078_RS07215 at 866.583 kb on + strand, within HMPREF1078_RS07215 at 866.584 kb on - strand, within HMPREF1078_RS07215 at 866.584 kb on - strand, within HMPREF1078_RS07215 at 866.584 kb on - strand, within HMPREF1078_RS07215 at 866.584 kb on - strand, within HMPREF1078_RS07215 at 866.684 kb on - strand, within HMPREF1078_RS07215 at 866.684 kb on - strand, within HMPREF1078_RS07215 at 866.684 kb on - strand, within HMPREF1078_RS07215 at 866.695 kb on + strand, within HMPREF1078_RS07215 at 866.764 kb on - strand, within HMPREF1078_RS07215 at 866.829 kb on + strand, within HMPREF1078_RS07215 at 866.971 kb on + strand, within HMPREF1078_RS07215 at 866.971 kb on + strand, within HMPREF1078_RS07215 at 866.971 kb on + strand, within HMPREF1078_RS07215 at 866.972 kb on - strand, within HMPREF1078_RS07215 at 867.088 kb on + strand at 867.136 kb on + strand at 867.304 kb on + strand at 867.304 kb on + strand at 867.304 kb on + strand at 867.304 kb on + strand at 867.305 kb on - strand at 867.308 kb on + strand at 867.308 kb on + strand at 867.309 kb on - strand at 867.309 kb on - strand at 867.375 kb on - strand, within HMPREF1078_RS07220 at 867.390 kb on + strand, within HMPREF1078_RS07220 at 867.390 kb on + strand, within HMPREF1078_RS07220 at 867.394 kb on - strand, within HMPREF1078_RS07220 at 867.394 kb on - strand, within HMPREF1078_RS07220 at 867.394 kb on - strand, within HMPREF1078_RS07220 at 867.402 kb on + strand, within HMPREF1078_RS07220 at 867.403 kb on - strand, within HMPREF1078_RS07220 at 867.436 kb on + strand, within HMPREF1078_RS07220 at 867.437 kb on - strand, within HMPREF1078_RS07220 at 867.437 kb on - strand, within HMPREF1078_RS07220 at 867.439 kb on + strand, within HMPREF1078_RS07220 at 867.439 kb on + strand, within HMPREF1078_RS07220 at 867.440 kb on - strand, within HMPREF1078_RS07220 at 867.451 kb on + strand, within HMPREF1078_RS07220 at 867.452 kb on - strand, within HMPREF1078_RS07220 at 867.452 kb on - strand, within HMPREF1078_RS07220 at 867.452 kb on - strand, within HMPREF1078_RS07220 at 867.463 kb on - strand, within HMPREF1078_RS07220 at 867.635 kb on + strand, within HMPREF1078_RS07220 at 867.635 kb on + strand, within HMPREF1078_RS07220 at 867.636 kb on - strand, within HMPREF1078_RS07220 at 867.636 kb on - strand, within HMPREF1078_RS07220 at 867.636 kb on - strand, within HMPREF1078_RS07220 at 867.636 kb on - strand, within HMPREF1078_RS07220 at 867.636 kb on - strand, within HMPREF1078_RS07220 at 867.637 kb on + strand, within HMPREF1078_RS07220 at 867.637 kb on + strand, within HMPREF1078_RS07220 at 867.638 kb on - strand, within HMPREF1078_RS07220 at 867.638 kb on - strand, within HMPREF1078_RS07220 at 867.638 kb on - strand, within HMPREF1078_RS07220 at 867.658 kb on + strand, within HMPREF1078_RS07220 at 867.832 kb on - strand, within HMPREF1078_RS07220 at 867.886 kb on - strand, within HMPREF1078_RS07220 at 868.037 kb on + strand, within HMPREF1078_RS07220 at 868.038 kb on + strand, within HMPREF1078_RS07220 at 868.059 kb on - strand, within HMPREF1078_RS07220 at 868.120 kb on - strand, within HMPREF1078_RS07220 at 868.165 kb on + strand, within HMPREF1078_RS07220 at 868.165 kb on + strand, within HMPREF1078_RS07220 at 868.165 kb on + strand, within HMPREF1078_RS07220 at 868.166 kb on - strand, within HMPREF1078_RS07220
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mg/mL (C) remove 864,436 + HMPREF1078_RS07210 0.28 -0.3 864,439 + HMPREF1078_RS07210 0.28 -0.4 864,439 + HMPREF1078_RS07210 0.28 +0.8 864,524 + HMPREF1078_RS07210 0.35 -1.1 864,628 + HMPREF1078_RS07210 0.44 -0.6 864,628 + HMPREF1078_RS07210 0.44 -0.4 864,775 + HMPREF1078_RS07210 0.56 -1.1 864,776 - HMPREF1078_RS07210 0.56 -1.0 864,804 + HMPREF1078_RS07210 0.58 +0.2 864,896 + HMPREF1078_RS07210 0.66 -0.4 864,919 + HMPREF1078_RS07210 0.68 +0.0 864,920 - HMPREF1078_RS07210 0.68 -0.3 864,935 - HMPREF1078_RS07210 0.69 -2.3 864,963 + HMPREF1078_RS07210 0.72 +0.1 864,967 + HMPREF1078_RS07210 0.72 -1.8 865,100 - HMPREF1078_RS07210 0.83 +0.1 865,123 + HMPREF1078_RS07210 0.85 +0.5 865,123 + HMPREF1078_RS07210 0.85 -0.2 865,211 + +0.1 865,211 + -0.2 865,212 - +1.0 865,212 - -0.2 865,218 - +0.8 865,285 - +0.5 865,286 + +0.9 865,287 - -0.7 865,339 + -0.9 865,381 + -0.4 865,383 + -4.6 865,384 - -2.6 865,384 - -1.6 865,384 - -3.2 865,384 - -2.8 865,387 + -3.6 865,387 + -1.0 865,387 + -0.5 865,387 + -4.0 865,388 - -4.1 865,390 - -3.0 865,392 + -4.4 865,573 - -3.0 865,580 + HMPREF1078_RS07215 0.10 -2.6 865,581 - HMPREF1078_RS07215 0.10 -3.8 865,822 - HMPREF1078_RS07215 0.23 -2.2 865,887 + HMPREF1078_RS07215 0.27 -2.6 865,887 + HMPREF1078_RS07215 0.27 -2.9 865,888 - HMPREF1078_RS07215 0.27 -3.5 865,894 - HMPREF1078_RS07215 0.27 -3.0 866,023 + HMPREF1078_RS07215 0.34 -4.0 866,029 + HMPREF1078_RS07215 0.34 -1.9 866,029 + HMPREF1078_RS07215 0.34 -3.6 866,040 + HMPREF1078_RS07215 0.35 -3.4 866,041 - HMPREF1078_RS07215 0.35 -0.9 866,118 + HMPREF1078_RS07215 0.39 -2.9 866,118 + HMPREF1078_RS07215 0.39 -3.9 866,118 + HMPREF1078_RS07215 0.39 -3.0 866,119 - HMPREF1078_RS07215 0.39 -3.9 866,165 + HMPREF1078_RS07215 0.42 -4.0 866,166 - HMPREF1078_RS07215 0.42 -4.2 866,232 + HMPREF1078_RS07215 0.45 -2.4 866,286 + HMPREF1078_RS07215 0.48 -1.8 866,439 + HMPREF1078_RS07215 0.56 -4.2 866,583 + HMPREF1078_RS07215 0.64 -4.5 866,583 + HMPREF1078_RS07215 0.64 -4.3 866,583 + HMPREF1078_RS07215 0.64 -1.6 866,584 - HMPREF1078_RS07215 0.64 -3.1 866,584 - HMPREF1078_RS07215 0.64 -3.0 866,584 - HMPREF1078_RS07215 0.64 -0.7 866,584 - HMPREF1078_RS07215 0.64 -2.4 866,684 - HMPREF1078_RS07215 0.70 -2.0 866,684 - HMPREF1078_RS07215 0.70 -2.8 866,684 - HMPREF1078_RS07215 0.70 -3.4 866,695 + HMPREF1078_RS07215 0.70 -2.9 866,764 - HMPREF1078_RS07215 0.74 -5.0 866,829 + HMPREF1078_RS07215 0.77 -0.7 866,971 + HMPREF1078_RS07215 0.85 -2.3 866,971 + HMPREF1078_RS07215 0.85 -2.0 866,971 + HMPREF1078_RS07215 0.85 -2.2 866,972 - HMPREF1078_RS07215 0.85 -0.9 867,088 + -1.5 867,136 + -3.4 867,304 + -3.9 867,304 + -0.7 867,304 + -2.0 867,304 + -2.8 867,305 - -3.0 867,308 + -2.5 867,308 + -1.0 867,309 - -2.0 867,309 - -2.1 867,375 - HMPREF1078_RS07220 0.12 -4.3 867,390 + HMPREF1078_RS07220 0.13 -3.5 867,390 + HMPREF1078_RS07220 0.13 -2.4 867,394 - HMPREF1078_RS07220 0.14 -1.0 867,394 - HMPREF1078_RS07220 0.14 -2.0 867,394 - HMPREF1078_RS07220 0.14 -1.0 867,402 + HMPREF1078_RS07220 0.15 -3.0 867,403 - HMPREF1078_RS07220 0.15 -4.0 867,436 + HMPREF1078_RS07220 0.18 -3.0 867,437 - HMPREF1078_RS07220 0.18 -1.2 867,437 - HMPREF1078_RS07220 0.18 -2.5 867,439 + HMPREF1078_RS07220 0.18 -2.4 867,439 + HMPREF1078_RS07220 0.18 -3.1 867,440 - HMPREF1078_RS07220 0.18 -3.1 867,451 + HMPREF1078_RS07220 0.19 -1.2 867,452 - HMPREF1078_RS07220 0.20 -2.5 867,452 - HMPREF1078_RS07220 0.20 -1.4 867,452 - HMPREF1078_RS07220 0.20 -3.2 867,463 - HMPREF1078_RS07220 0.21 -3.2 867,635 + HMPREF1078_RS07220 0.38 -2.1 867,635 + HMPREF1078_RS07220 0.38 -2.2 867,636 - HMPREF1078_RS07220 0.38 -4.7 867,636 - HMPREF1078_RS07220 0.38 -4.0 867,636 - HMPREF1078_RS07220 0.38 -1.5 867,636 - HMPREF1078_RS07220 0.38 -3.0 867,636 - HMPREF1078_RS07220 0.38 -1.8 867,637 + HMPREF1078_RS07220 0.38 -4.1 867,637 + HMPREF1078_RS07220 0.38 -3.3 867,638 - HMPREF1078_RS07220 0.38 -2.7 867,638 - HMPREF1078_RS07220 0.38 -2.9 867,638 - HMPREF1078_RS07220 0.38 -1.0 867,658 + HMPREF1078_RS07220 0.40 -3.2 867,832 - HMPREF1078_RS07220 0.57 -3.6 867,886 - HMPREF1078_RS07220 0.62 -3.7 868,037 + HMPREF1078_RS07220 0.77 -0.5 868,038 + HMPREF1078_RS07220 0.77 -4.8 868,059 - HMPREF1078_RS07220 0.79 -4.7 868,120 - HMPREF1078_RS07220 0.85 -1.3 868,165 + HMPREF1078_RS07220 0.90 -3.8 868,165 + HMPREF1078_RS07220 0.90 -0.9 868,165 + HMPREF1078_RS07220 0.90 -1.9 868,166 - HMPREF1078_RS07220 0.90 -2.1
Or see this region's nucleotide sequence