Experiment: D-Mannose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS06805 and HMPREF1078_RS06810 are separated by 128 nucleotides HMPREF1078_RS06810 and HMPREF1078_RS06815 overlap by 16 nucleotides HMPREF1078_RS06815 and HMPREF1078_RS06820 are separated by 0 nucleotides
HMPREF1078_RS06805: HMPREF1078_RS06805 - phosphoribosylamine--glycine ligase, at 765,569 to 766,840
_RS06805
HMPREF1078_RS06810: HMPREF1078_RS06810 - hypothetical protein, at 766,969 to 767,982
_RS06810
HMPREF1078_RS06815: HMPREF1078_RS06815 - VTT domain-containing protein, at 767,967 to 768,416
_RS06815
HMPREF1078_RS06820: HMPREF1078_RS06820 - DUF5036 family protein, at 768,417 to 769,130
_RS06820
Position (kb) 766
767
768 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 766.004 kb on + strand, within HMPREF1078_RS06805 at 766.004 kb on + strand, within HMPREF1078_RS06805 at 766.004 kb on + strand, within HMPREF1078_RS06805 at 766.008 kb on + strand, within HMPREF1078_RS06805 at 766.091 kb on - strand, within HMPREF1078_RS06805 at 766.193 kb on + strand, within HMPREF1078_RS06805 at 766.193 kb on + strand, within HMPREF1078_RS06805 at 766.194 kb on - strand, within HMPREF1078_RS06805 at 766.255 kb on + strand, within HMPREF1078_RS06805 at 766.306 kb on + strand, within HMPREF1078_RS06805 at 766.328 kb on - strand, within HMPREF1078_RS06805 at 766.373 kb on + strand, within HMPREF1078_RS06805 at 766.374 kb on - strand, within HMPREF1078_RS06805 at 766.374 kb on - strand, within HMPREF1078_RS06805 at 766.421 kb on - strand, within HMPREF1078_RS06805 at 766.434 kb on - strand, within HMPREF1078_RS06805 at 766.435 kb on + strand, within HMPREF1078_RS06805 at 766.540 kb on + strand, within HMPREF1078_RS06805 at 766.540 kb on + strand, within HMPREF1078_RS06805 at 766.540 kb on + strand, within HMPREF1078_RS06805 at 766.541 kb on - strand, within HMPREF1078_RS06805 at 766.570 kb on - strand, within HMPREF1078_RS06805 at 766.585 kb on - strand, within HMPREF1078_RS06805 at 766.607 kb on + strand, within HMPREF1078_RS06805 at 766.624 kb on + strand, within HMPREF1078_RS06805 at 766.852 kb on - strand at 766.863 kb on + strand at 766.875 kb on + strand at 766.981 kb on + strand at 766.981 kb on + strand at 766.981 kb on + strand at 766.982 kb on - strand at 766.982 kb on - strand at 766.991 kb on - strand at 767.049 kb on + strand at 767.049 kb on + strand at 767.049 kb on + strand at 767.050 kb on - strand at 767.071 kb on + strand, within HMPREF1078_RS06810 at 767.168 kb on - strand, within HMPREF1078_RS06810 at 767.169 kb on + strand, within HMPREF1078_RS06810 at 767.169 kb on + strand, within HMPREF1078_RS06810 at 767.170 kb on - strand, within HMPREF1078_RS06810 at 767.224 kb on + strand, within HMPREF1078_RS06810 at 767.224 kb on + strand, within HMPREF1078_RS06810 at 767.225 kb on - strand, within HMPREF1078_RS06810 at 767.228 kb on + strand, within HMPREF1078_RS06810 at 767.229 kb on - strand, within HMPREF1078_RS06810 at 767.229 kb on - strand, within HMPREF1078_RS06810 at 767.240 kb on + strand, within HMPREF1078_RS06810 at 767.272 kb on + strand, within HMPREF1078_RS06810 at 767.272 kb on + strand, within HMPREF1078_RS06810 at 767.273 kb on - strand, within HMPREF1078_RS06810 at 767.290 kb on - strand, within HMPREF1078_RS06810 at 767.318 kb on - strand, within HMPREF1078_RS06810 at 767.374 kb on + strand, within HMPREF1078_RS06810 at 767.374 kb on + strand, within HMPREF1078_RS06810 at 767.375 kb on - strand, within HMPREF1078_RS06810 at 767.375 kb on - strand, within HMPREF1078_RS06810 at 767.375 kb on - strand, within HMPREF1078_RS06810 at 767.375 kb on - strand, within HMPREF1078_RS06810 at 767.404 kb on + strand, within HMPREF1078_RS06810 at 767.430 kb on - strand, within HMPREF1078_RS06810 at 767.535 kb on - strand, within HMPREF1078_RS06810 at 767.551 kb on + strand, within HMPREF1078_RS06810 at 767.551 kb on + strand, within HMPREF1078_RS06810 at 767.654 kb on + strand, within HMPREF1078_RS06810 at 767.955 kb on - strand at 767.963 kb on + strand at 767.965 kb on - strand at 767.980 kb on + strand at 767.982 kb on + strand at 767.991 kb on + strand at 767.992 kb on - strand at 767.993 kb on + strand at 767.993 kb on + strand at 767.994 kb on - strand at 767.994 kb on - strand at 767.994 kb on - strand at 768.098 kb on + strand, within HMPREF1078_RS06815 at 768.115 kb on + strand, within HMPREF1078_RS06815 at 768.115 kb on + strand, within HMPREF1078_RS06815 at 768.119 kb on + strand, within HMPREF1078_RS06815 at 768.156 kb on - strand, within HMPREF1078_RS06815 at 768.187 kb on - strand, within HMPREF1078_RS06815 at 768.280 kb on + strand, within HMPREF1078_RS06815 at 768.395 kb on + strand at 768.396 kb on - strand at 768.434 kb on - strand at 768.434 kb on - strand at 768.435 kb on + strand at 768.435 kb on + strand at 768.436 kb on - strand at 768.445 kb on + strand at 768.446 kb on - strand at 768.446 kb on - strand at 768.446 kb on - strand at 768.466 kb on + strand at 768.522 kb on + strand, within HMPREF1078_RS06820 at 768.571 kb on + strand, within HMPREF1078_RS06820 at 768.745 kb on + strand, within HMPREF1078_RS06820 at 768.747 kb on + strand, within HMPREF1078_RS06820 at 768.757 kb on + strand, within HMPREF1078_RS06820 at 768.757 kb on + strand, within HMPREF1078_RS06820 at 768.758 kb on - strand, within HMPREF1078_RS06820 at 768.829 kb on + strand, within HMPREF1078_RS06820 at 768.970 kb on + strand, within HMPREF1078_RS06820 at 768.970 kb on + strand, within HMPREF1078_RS06820 at 768.971 kb on - strand, within HMPREF1078_RS06820 at 768.971 kb on - strand, within HMPREF1078_RS06820 at 768.971 kb on - strand, within HMPREF1078_RS06820 at 768.971 kb on - strand, within HMPREF1078_RS06820
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mg/mL (C) remove 766,004 + HMPREF1078_RS06805 0.34 -3.4 766,004 + HMPREF1078_RS06805 0.34 -3.4 766,004 + HMPREF1078_RS06805 0.34 -3.3 766,008 + HMPREF1078_RS06805 0.35 -2.4 766,091 - HMPREF1078_RS06805 0.41 -3.4 766,193 + HMPREF1078_RS06805 0.49 -3.9 766,193 + HMPREF1078_RS06805 0.49 -3.6 766,194 - HMPREF1078_RS06805 0.49 -2.9 766,255 + HMPREF1078_RS06805 0.54 -1.8 766,306 + HMPREF1078_RS06805 0.58 -3.7 766,328 - HMPREF1078_RS06805 0.60 -4.2 766,373 + HMPREF1078_RS06805 0.63 -3.7 766,374 - HMPREF1078_RS06805 0.63 -4.6 766,374 - HMPREF1078_RS06805 0.63 -4.3 766,421 - HMPREF1078_RS06805 0.67 -2.2 766,434 - HMPREF1078_RS06805 0.68 -4.3 766,435 + HMPREF1078_RS06805 0.68 -3.2 766,540 + HMPREF1078_RS06805 0.76 -4.4 766,540 + HMPREF1078_RS06805 0.76 -3.3 766,540 + HMPREF1078_RS06805 0.76 -3.7 766,541 - HMPREF1078_RS06805 0.76 -0.0 766,570 - HMPREF1078_RS06805 0.79 -2.3 766,585 - HMPREF1078_RS06805 0.80 -4.0 766,607 + HMPREF1078_RS06805 0.82 -4.2 766,624 + HMPREF1078_RS06805 0.83 -4.9 766,852 - -3.2 766,863 + -0.7 766,875 + -0.9 766,981 + -3.6 766,981 + -2.7 766,981 + +0.0 766,982 - -2.0 766,982 - -0.2 766,991 - -1.8 767,049 + -3.3 767,049 + -2.1 767,049 + -1.0 767,050 - -4.9 767,071 + HMPREF1078_RS06810 0.10 -0.8 767,168 - HMPREF1078_RS06810 0.20 -3.2 767,169 + HMPREF1078_RS06810 0.20 -2.9 767,169 + HMPREF1078_RS06810 0.20 -4.0 767,170 - HMPREF1078_RS06810 0.20 -3.1 767,224 + HMPREF1078_RS06810 0.25 -3.9 767,224 + HMPREF1078_RS06810 0.25 -2.3 767,225 - HMPREF1078_RS06810 0.25 -2.9 767,228 + HMPREF1078_RS06810 0.26 -2.8 767,229 - HMPREF1078_RS06810 0.26 -2.1 767,229 - HMPREF1078_RS06810 0.26 -3.8 767,240 + HMPREF1078_RS06810 0.27 -2.6 767,272 + HMPREF1078_RS06810 0.30 -3.8 767,272 + HMPREF1078_RS06810 0.30 -2.4 767,273 - HMPREF1078_RS06810 0.30 -2.8 767,290 - HMPREF1078_RS06810 0.32 -2.5 767,318 - HMPREF1078_RS06810 0.34 -1.9 767,374 + HMPREF1078_RS06810 0.40 -2.7 767,374 + HMPREF1078_RS06810 0.40 -1.8 767,375 - HMPREF1078_RS06810 0.40 -4.2 767,375 - HMPREF1078_RS06810 0.40 -3.5 767,375 - HMPREF1078_RS06810 0.40 -1.6 767,375 - HMPREF1078_RS06810 0.40 -3.1 767,404 + HMPREF1078_RS06810 0.43 -2.8 767,430 - HMPREF1078_RS06810 0.45 -3.9 767,535 - HMPREF1078_RS06810 0.56 -1.0 767,551 + HMPREF1078_RS06810 0.57 -3.5 767,551 + HMPREF1078_RS06810 0.57 -1.3 767,654 + HMPREF1078_RS06810 0.68 -2.5 767,955 - -1.2 767,963 + -3.4 767,965 - -1.4 767,980 + -0.8 767,982 + +1.7 767,991 + -0.2 767,992 - -0.4 767,993 + +0.5 767,993 + -1.2 767,994 - -0.1 767,994 - -1.7 767,994 - -0.0 768,098 + HMPREF1078_RS06815 0.29 -0.0 768,115 + HMPREF1078_RS06815 0.33 -0.5 768,115 + HMPREF1078_RS06815 0.33 -1.4 768,119 + HMPREF1078_RS06815 0.34 -1.4 768,156 - HMPREF1078_RS06815 0.42 +0.8 768,187 - HMPREF1078_RS06815 0.49 +0.4 768,280 + HMPREF1078_RS06815 0.70 -1.2 768,395 + -0.4 768,396 - +0.7 768,434 - -0.1 768,434 - +0.7 768,435 + -3.8 768,435 + -0.1 768,436 - -0.2 768,445 + +0.9 768,446 - +0.0 768,446 - -1.1 768,446 - +0.1 768,466 + -0.2 768,522 + HMPREF1078_RS06820 0.15 +0.9 768,571 + HMPREF1078_RS06820 0.22 -0.9 768,745 + HMPREF1078_RS06820 0.46 -0.9 768,747 + HMPREF1078_RS06820 0.46 -0.5 768,757 + HMPREF1078_RS06820 0.48 -0.8 768,757 + HMPREF1078_RS06820 0.48 -0.5 768,758 - HMPREF1078_RS06820 0.48 -0.7 768,829 + HMPREF1078_RS06820 0.58 -0.4 768,970 + HMPREF1078_RS06820 0.77 -0.4 768,970 + HMPREF1078_RS06820 0.77 -0.7 768,971 - HMPREF1078_RS06820 0.78 -0.3 768,971 - HMPREF1078_RS06820 0.78 +0.6 768,971 - HMPREF1078_RS06820 0.78 +0.1 768,971 - HMPREF1078_RS06820 0.78 +0.1
Or see this region's nucleotide sequence