Experiment: D-Mannose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS05925 and HMPREF1078_RS05930 are separated by 16 nucleotides HMPREF1078_RS05930 and HMPREF1078_RS05935 overlap by 4 nucleotides HMPREF1078_RS05935 and HMPREF1078_RS05940 are separated by 118 nucleotides
HMPREF1078_RS05925: HMPREF1078_RS05925 - hypothetical protein, at 520,207 to 520,827
_RS05925
HMPREF1078_RS05930: HMPREF1078_RS05930 - glycine cleavage system protein GcvH, at 520,844 to 521,224
_RS05930
HMPREF1078_RS05935: HMPREF1078_RS05935 - 5-(carboxyamino)imidazole ribonucleotide mutase, at 521,221 to 521,727
_RS05935
HMPREF1078_RS05940: HMPREF1078_RS05940 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, at 521,846 to 523,687
_RS05940
Position (kb) 521
522 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 520.224 kb on + strand at 520.224 kb on + strand at 520.225 kb on - strand at 520.225 kb on - strand at 520.264 kb on + strand at 520.264 kb on + strand at 520.264 kb on + strand at 520.264 kb on + strand at 520.265 kb on - strand at 520.265 kb on - strand at 520.294 kb on + strand, within HMPREF1078_RS05925 at 520.391 kb on + strand, within HMPREF1078_RS05925 at 520.421 kb on + strand, within HMPREF1078_RS05925 at 520.451 kb on - strand, within HMPREF1078_RS05925 at 520.490 kb on - strand, within HMPREF1078_RS05925 at 520.492 kb on - strand, within HMPREF1078_RS05925 at 520.492 kb on - strand, within HMPREF1078_RS05925 at 520.492 kb on - strand, within HMPREF1078_RS05925 at 520.492 kb on - strand, within HMPREF1078_RS05925 at 520.492 kb on - strand, within HMPREF1078_RS05925 at 520.495 kb on + strand, within HMPREF1078_RS05925 at 520.495 kb on + strand, within HMPREF1078_RS05925 at 520.496 kb on - strand, within HMPREF1078_RS05925 at 520.496 kb on - strand, within HMPREF1078_RS05925 at 520.497 kb on + strand, within HMPREF1078_RS05925 at 520.498 kb on - strand, within HMPREF1078_RS05925 at 520.565 kb on + strand, within HMPREF1078_RS05925 at 520.565 kb on + strand, within HMPREF1078_RS05925 at 520.566 kb on - strand, within HMPREF1078_RS05925 at 520.622 kb on + strand, within HMPREF1078_RS05925 at 520.622 kb on + strand, within HMPREF1078_RS05925 at 520.622 kb on + strand, within HMPREF1078_RS05925 at 520.622 kb on + strand, within HMPREF1078_RS05925 at 520.622 kb on + strand, within HMPREF1078_RS05925 at 520.623 kb on - strand, within HMPREF1078_RS05925 at 520.623 kb on - strand, within HMPREF1078_RS05925 at 520.629 kb on + strand, within HMPREF1078_RS05925 at 520.659 kb on - strand, within HMPREF1078_RS05925 at 520.691 kb on + strand, within HMPREF1078_RS05925 at 520.691 kb on + strand, within HMPREF1078_RS05925 at 520.692 kb on - strand, within HMPREF1078_RS05925 at 520.737 kb on + strand, within HMPREF1078_RS05925 at 520.738 kb on - strand, within HMPREF1078_RS05925 at 520.743 kb on + strand, within HMPREF1078_RS05925 at 520.751 kb on + strand, within HMPREF1078_RS05925 at 520.751 kb on + strand, within HMPREF1078_RS05925 at 520.752 kb on - strand, within HMPREF1078_RS05925 at 520.752 kb on - strand, within HMPREF1078_RS05925 at 520.753 kb on + strand, within HMPREF1078_RS05925 at 520.753 kb on + strand, within HMPREF1078_RS05925 at 520.753 kb on + strand, within HMPREF1078_RS05925 at 520.754 kb on - strand, within HMPREF1078_RS05925 at 520.754 kb on - strand, within HMPREF1078_RS05925 at 520.776 kb on + strand at 520.778 kb on + strand at 520.782 kb on + strand at 520.782 kb on + strand at 520.809 kb on + strand at 520.809 kb on + strand at 520.817 kb on + strand at 520.863 kb on + strand at 520.863 kb on + strand at 520.896 kb on + strand, within HMPREF1078_RS05930 at 520.921 kb on + strand, within HMPREF1078_RS05930 at 520.924 kb on + strand, within HMPREF1078_RS05930 at 520.931 kb on + strand, within HMPREF1078_RS05930 at 521.028 kb on + strand, within HMPREF1078_RS05930 at 521.046 kb on + strand, within HMPREF1078_RS05930 at 521.046 kb on + strand, within HMPREF1078_RS05930 at 521.124 kb on + strand, within HMPREF1078_RS05930 at 521.124 kb on + strand, within HMPREF1078_RS05930 at 521.124 kb on + strand, within HMPREF1078_RS05930 at 521.124 kb on + strand, within HMPREF1078_RS05930 at 521.124 kb on + strand, within HMPREF1078_RS05930 at 521.126 kb on + strand, within HMPREF1078_RS05930 at 521.151 kb on + strand, within HMPREF1078_RS05930 at 521.151 kb on + strand, within HMPREF1078_RS05930 at 521.201 kb on + strand at 521.241 kb on + strand at 521.253 kb on + strand at 521.253 kb on + strand at 521.343 kb on + strand, within HMPREF1078_RS05935 at 521.586 kb on + strand, within HMPREF1078_RS05935 at 521.586 kb on + strand, within HMPREF1078_RS05935 at 521.647 kb on + strand, within HMPREF1078_RS05935 at 521.647 kb on + strand, within HMPREF1078_RS05935 at 521.715 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mg/mL (C) remove 520,224 + -0.7 520,224 + -0.6 520,225 - -1.9 520,225 - -0.5 520,264 + -1.9 520,264 + +0.9 520,264 + -0.9 520,264 + -2.2 520,265 - -0.1 520,265 - -0.8 520,294 + HMPREF1078_RS05925 0.14 -0.1 520,391 + HMPREF1078_RS05925 0.30 -0.7 520,421 + HMPREF1078_RS05925 0.34 -3.3 520,451 - HMPREF1078_RS05925 0.39 -0.2 520,490 - HMPREF1078_RS05925 0.46 -1.9 520,492 - HMPREF1078_RS05925 0.46 -0.2 520,492 - HMPREF1078_RS05925 0.46 -2.4 520,492 - HMPREF1078_RS05925 0.46 -0.6 520,492 - HMPREF1078_RS05925 0.46 +0.1 520,492 - HMPREF1078_RS05925 0.46 -2.2 520,495 + HMPREF1078_RS05925 0.46 -0.4 520,495 + HMPREF1078_RS05925 0.46 -1.3 520,496 - HMPREF1078_RS05925 0.47 -1.6 520,496 - HMPREF1078_RS05925 0.47 -0.1 520,497 + HMPREF1078_RS05925 0.47 -1.4 520,498 - HMPREF1078_RS05925 0.47 +1.3 520,565 + HMPREF1078_RS05925 0.58 -4.5 520,565 + HMPREF1078_RS05925 0.58 -0.3 520,566 - HMPREF1078_RS05925 0.58 -1.1 520,622 + HMPREF1078_RS05925 0.67 -1.1 520,622 + HMPREF1078_RS05925 0.67 -1.7 520,622 + HMPREF1078_RS05925 0.67 -2.5 520,622 + HMPREF1078_RS05925 0.67 +0.0 520,622 + HMPREF1078_RS05925 0.67 -0.6 520,623 - HMPREF1078_RS05925 0.67 -1.3 520,623 - HMPREF1078_RS05925 0.67 -2.9 520,629 + HMPREF1078_RS05925 0.68 +0.0 520,659 - HMPREF1078_RS05925 0.73 +1.3 520,691 + HMPREF1078_RS05925 0.78 -2.4 520,691 + HMPREF1078_RS05925 0.78 -0.1 520,692 - HMPREF1078_RS05925 0.78 -1.2 520,737 + HMPREF1078_RS05925 0.85 +0.1 520,738 - HMPREF1078_RS05925 0.86 -1.4 520,743 + HMPREF1078_RS05925 0.86 -3.3 520,751 + HMPREF1078_RS05925 0.88 -1.5 520,751 + HMPREF1078_RS05925 0.88 -0.6 520,752 - HMPREF1078_RS05925 0.88 -1.4 520,752 - HMPREF1078_RS05925 0.88 -0.3 520,753 + HMPREF1078_RS05925 0.88 -0.5 520,753 + HMPREF1078_RS05925 0.88 -0.5 520,753 + HMPREF1078_RS05925 0.88 -1.6 520,754 - HMPREF1078_RS05925 0.88 -0.5 520,754 - HMPREF1078_RS05925 0.88 -1.0 520,776 + -3.1 520,778 + -2.7 520,782 + -1.5 520,782 + -1.7 520,809 + -0.3 520,809 + -0.4 520,817 + -1.0 520,863 + +0.1 520,863 + +0.1 520,896 + HMPREF1078_RS05930 0.14 -1.6 520,921 + HMPREF1078_RS05930 0.20 -0.1 520,924 + HMPREF1078_RS05930 0.21 -0.6 520,931 + HMPREF1078_RS05930 0.23 +0.4 521,028 + HMPREF1078_RS05930 0.48 -1.4 521,046 + HMPREF1078_RS05930 0.53 -0.3 521,046 + HMPREF1078_RS05930 0.53 -1.0 521,124 + HMPREF1078_RS05930 0.73 +0.9 521,124 + HMPREF1078_RS05930 0.73 -0.4 521,124 + HMPREF1078_RS05930 0.73 -0.6 521,124 + HMPREF1078_RS05930 0.73 -0.2 521,124 + HMPREF1078_RS05930 0.73 -0.9 521,126 + HMPREF1078_RS05930 0.74 -0.3 521,151 + HMPREF1078_RS05930 0.81 +0.0 521,151 + HMPREF1078_RS05930 0.81 -1.6 521,201 + -0.5 521,241 + -4.1 521,253 + -3.0 521,253 + -4.1 521,343 + HMPREF1078_RS05935 0.24 -3.6 521,586 + HMPREF1078_RS05935 0.72 -3.0 521,586 + HMPREF1078_RS05935 0.72 -3.7 521,647 + HMPREF1078_RS05935 0.84 -2.2 521,647 + HMPREF1078_RS05935 0.84 -3.0 521,715 + -2.6
Or see this region's nucleotide sequence