Experiment: D-Mannose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS05830 and HMPREF1078_RS05835 are separated by 9 nucleotides HMPREF1078_RS05835 and HMPREF1078_RS05840 are separated by 54 nucleotides
HMPREF1078_RS05830: HMPREF1078_RS05830 - riboflavin biosynthesis protein RibF, at 492,866 to 493,792
_RS05830
HMPREF1078_RS05835: HMPREF1078_RS05835 - M20 family metallo-hydrolase, at 493,802 to 494,857
_RS05835
HMPREF1078_RS05840: HMPREF1078_RS05840 - lipopolysaccharide biosynthesis protein, at 494,912 to 496,201
_RS05840
Position (kb) 493
494
495 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 492.806 kb on - strand at 492.839 kb on + strand at 492.839 kb on + strand at 492.839 kb on + strand at 492.839 kb on + strand at 492.843 kb on + strand at 492.843 kb on + strand at 492.845 kb on + strand at 493.775 kb on - strand at 493.775 kb on - strand at 493.798 kb on - strand at 493.806 kb on - strand at 493.806 kb on - strand at 493.818 kb on + strand at 493.818 kb on + strand at 493.825 kb on - strand at 493.915 kb on + strand, within HMPREF1078_RS05835 at 494.139 kb on + strand, within HMPREF1078_RS05835 at 494.596 kb on - strand, within HMPREF1078_RS05835 at 494.729 kb on + strand, within HMPREF1078_RS05835 at 494.782 kb on + strand at 494.819 kb on + strand at 494.819 kb on + strand at 494.819 kb on + strand at 494.820 kb on - strand at 494.822 kb on - strand at 494.856 kb on + strand at 494.889 kb on + strand at 494.911 kb on + strand at 494.911 kb on + strand at 494.911 kb on + strand at 494.912 kb on - strand at 494.982 kb on + strand at 495.040 kb on - strand at 495.042 kb on + strand, within HMPREF1078_RS05840 at 495.043 kb on - strand, within HMPREF1078_RS05840 at 495.083 kb on - strand, within HMPREF1078_RS05840 at 495.138 kb on - strand, within HMPREF1078_RS05840 at 495.224 kb on + strand, within HMPREF1078_RS05840 at 495.225 kb on - strand, within HMPREF1078_RS05840 at 495.331 kb on - strand, within HMPREF1078_RS05840 at 495.346 kb on - strand, within HMPREF1078_RS05840 at 495.346 kb on - strand, within HMPREF1078_RS05840 at 495.348 kb on + strand, within HMPREF1078_RS05840 at 495.356 kb on + strand, within HMPREF1078_RS05840 at 495.372 kb on + strand, within HMPREF1078_RS05840 at 495.373 kb on - strand, within HMPREF1078_RS05840 at 495.405 kb on - strand, within HMPREF1078_RS05840 at 495.500 kb on + strand, within HMPREF1078_RS05840 at 495.554 kb on + strand, within HMPREF1078_RS05840 at 495.667 kb on + strand, within HMPREF1078_RS05840 at 495.695 kb on + strand, within HMPREF1078_RS05840
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mg/mL (C) remove 492,806 - -0.5 492,839 + -0.7 492,839 + -0.0 492,839 + +1.3 492,839 + +0.2 492,843 + +0.1 492,843 + -0.4 492,845 + +0.3 493,775 - -2.6 493,775 - -4.5 493,798 - -2.5 493,806 - -3.4 493,806 - -5.0 493,818 + -2.7 493,818 + -4.4 493,825 - -3.6 493,915 + HMPREF1078_RS05835 0.11 -1.7 494,139 + HMPREF1078_RS05835 0.32 -3.7 494,596 - HMPREF1078_RS05835 0.75 -2.5 494,729 + HMPREF1078_RS05835 0.88 -3.6 494,782 + -5.6 494,819 + -4.5 494,819 + -4.6 494,819 + -3.9 494,820 - -4.6 494,822 - -2.2 494,856 + +0.9 494,889 + +1.6 494,911 + +0.1 494,911 + -0.3 494,911 + +0.1 494,912 - +0.2 494,982 + -0.6 495,040 - +1.1 495,042 + HMPREF1078_RS05840 0.10 -0.0 495,043 - HMPREF1078_RS05840 0.10 +0.1 495,083 - HMPREF1078_RS05840 0.13 -0.4 495,138 - HMPREF1078_RS05840 0.18 +1.7 495,224 + HMPREF1078_RS05840 0.24 -2.0 495,225 - HMPREF1078_RS05840 0.24 +0.1 495,331 - HMPREF1078_RS05840 0.32 +0.2 495,346 - HMPREF1078_RS05840 0.34 +0.3 495,346 - HMPREF1078_RS05840 0.34 -1.9 495,348 + HMPREF1078_RS05840 0.34 -0.0 495,356 + HMPREF1078_RS05840 0.34 +0.1 495,372 + HMPREF1078_RS05840 0.36 +0.7 495,373 - HMPREF1078_RS05840 0.36 -0.6 495,405 - HMPREF1078_RS05840 0.38 -0.7 495,500 + HMPREF1078_RS05840 0.46 -0.1 495,554 + HMPREF1078_RS05840 0.50 +0.4 495,667 + HMPREF1078_RS05840 0.59 +0.3 495,695 + HMPREF1078_RS05840 0.61 +0.9
Or see this region's nucleotide sequence