Experiment: D-Mannose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS05500 and HMPREF1078_RS05505 are separated by 88 nucleotides HMPREF1078_RS05505 and HMPREF1078_RS05510 are separated by 6 nucleotides
HMPREF1078_RS05500: HMPREF1078_RS05500 - SUMF1/EgtB/PvdO family nonheme iron enzyme, at 388,890 to 390,317
_RS05500
HMPREF1078_RS05505: HMPREF1078_RS05505 - gliding motility protein GldL, at 390,406 to 391,437
_RS05505
HMPREF1078_RS05510: HMPREF1078_RS05510 - gliding motility protein GldM, at 391,444 to 393,012
_RS05510
Position (kb) 390
391
392 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 389.419 kb on - strand, within HMPREF1078_RS05500 at 389.426 kb on + strand, within HMPREF1078_RS05500 at 389.426 kb on + strand, within HMPREF1078_RS05500 at 389.426 kb on + strand, within HMPREF1078_RS05500 at 389.426 kb on + strand, within HMPREF1078_RS05500 at 389.427 kb on - strand, within HMPREF1078_RS05500 at 389.427 kb on - strand, within HMPREF1078_RS05500 at 389.427 kb on - strand, within HMPREF1078_RS05500 at 389.478 kb on - strand, within HMPREF1078_RS05500 at 389.535 kb on + strand, within HMPREF1078_RS05500 at 389.535 kb on + strand, within HMPREF1078_RS05500 at 389.624 kb on + strand, within HMPREF1078_RS05500 at 389.625 kb on - strand, within HMPREF1078_RS05500 at 389.629 kb on - strand, within HMPREF1078_RS05500 at 389.682 kb on + strand, within HMPREF1078_RS05500 at 389.682 kb on + strand, within HMPREF1078_RS05500 at 389.682 kb on + strand, within HMPREF1078_RS05500 at 389.682 kb on + strand, within HMPREF1078_RS05500 at 389.683 kb on - strand, within HMPREF1078_RS05500 at 389.683 kb on - strand, within HMPREF1078_RS05500 at 389.684 kb on + strand, within HMPREF1078_RS05500 at 389.684 kb on + strand, within HMPREF1078_RS05500 at 389.684 kb on + strand, within HMPREF1078_RS05500 at 389.684 kb on + strand, within HMPREF1078_RS05500 at 389.685 kb on - strand, within HMPREF1078_RS05500 at 389.685 kb on - strand, within HMPREF1078_RS05500 at 389.685 kb on - strand, within HMPREF1078_RS05500 at 389.685 kb on - strand, within HMPREF1078_RS05500 at 389.690 kb on + strand, within HMPREF1078_RS05500 at 389.690 kb on + strand, within HMPREF1078_RS05500 at 389.690 kb on + strand, within HMPREF1078_RS05500 at 389.690 kb on + strand, within HMPREF1078_RS05500 at 389.690 kb on + strand, within HMPREF1078_RS05500 at 389.690 kb on + strand, within HMPREF1078_RS05500 at 389.690 kb on + strand, within HMPREF1078_RS05500 at 389.691 kb on - strand, within HMPREF1078_RS05500 at 389.691 kb on - strand, within HMPREF1078_RS05500 at 389.691 kb on - strand, within HMPREF1078_RS05500 at 389.691 kb on - strand, within HMPREF1078_RS05500 at 389.691 kb on - strand, within HMPREF1078_RS05500 at 389.691 kb on - strand, within HMPREF1078_RS05500 at 389.694 kb on + strand, within HMPREF1078_RS05500 at 389.695 kb on - strand, within HMPREF1078_RS05500 at 389.731 kb on + strand, within HMPREF1078_RS05500 at 389.731 kb on + strand, within HMPREF1078_RS05500 at 389.768 kb on - strand, within HMPREF1078_RS05500 at 389.859 kb on + strand, within HMPREF1078_RS05500 at 389.859 kb on + strand, within HMPREF1078_RS05500 at 389.892 kb on + strand, within HMPREF1078_RS05500 at 389.893 kb on - strand, within HMPREF1078_RS05500 at 389.893 kb on - strand, within HMPREF1078_RS05500 at 389.963 kb on + strand, within HMPREF1078_RS05500 at 389.963 kb on + strand, within HMPREF1078_RS05500 at 389.967 kb on + strand, within HMPREF1078_RS05500 at 389.967 kb on + strand, within HMPREF1078_RS05500 at 389.967 kb on + strand, within HMPREF1078_RS05500 at 389.967 kb on - strand, within HMPREF1078_RS05500 at 389.968 kb on - strand, within HMPREF1078_RS05500 at 389.968 kb on - strand, within HMPREF1078_RS05500 at 389.969 kb on + strand, within HMPREF1078_RS05500 at 389.970 kb on - strand, within HMPREF1078_RS05500 at 390.127 kb on - strand, within HMPREF1078_RS05500 at 390.150 kb on + strand, within HMPREF1078_RS05500 at 390.172 kb on + strand, within HMPREF1078_RS05500 at 390.255 kb on + strand at 390.255 kb on + strand at 390.255 kb on + strand at 390.255 kb on + strand at 390.256 kb on - strand at 390.256 kb on - strand at 390.256 kb on - strand at 390.256 kb on - strand at 390.347 kb on - strand at 390.358 kb on - strand at 390.358 kb on - strand at 390.359 kb on + strand at 390.360 kb on - strand at 390.360 kb on - strand at 390.364 kb on + strand at 390.364 kb on + strand at 390.366 kb on + strand at 390.366 kb on + strand at 390.379 kb on + strand at 390.381 kb on + strand at 390.388 kb on + strand at 390.391 kb on - strand at 390.401 kb on + strand at 390.451 kb on + strand at 390.453 kb on + strand at 390.453 kb on + strand at 390.474 kb on + strand at 390.475 kb on - strand at 390.475 kb on - strand at 390.477 kb on + strand at 390.478 kb on - strand at 390.479 kb on + strand at 390.480 kb on - strand at 390.500 kb on + strand at 390.500 kb on + strand at 390.500 kb on + strand at 390.565 kb on - strand, within HMPREF1078_RS05505 at 390.669 kb on + strand, within HMPREF1078_RS05505 at 390.669 kb on + strand, within HMPREF1078_RS05505 at 390.740 kb on + strand, within HMPREF1078_RS05505 at 390.820 kb on - strand, within HMPREF1078_RS05505 at 390.889 kb on + strand, within HMPREF1078_RS05505 at 390.890 kb on - strand, within HMPREF1078_RS05505 at 390.909 kb on + strand, within HMPREF1078_RS05505 at 390.909 kb on + strand, within HMPREF1078_RS05505 at 390.986 kb on - strand, within HMPREF1078_RS05505 at 390.988 kb on - strand, within HMPREF1078_RS05505 at 390.996 kb on + strand, within HMPREF1078_RS05505 at 391.098 kb on - strand, within HMPREF1078_RS05505 at 391.140 kb on + strand, within HMPREF1078_RS05505 at 391.140 kb on + strand, within HMPREF1078_RS05505 at 391.140 kb on + strand, within HMPREF1078_RS05505 at 391.140 kb on + strand, within HMPREF1078_RS05505 at 391.140 kb on + strand, within HMPREF1078_RS05505 at 391.141 kb on - strand, within HMPREF1078_RS05505 at 391.175 kb on - strand, within HMPREF1078_RS05505 at 391.257 kb on - strand, within HMPREF1078_RS05505 at 391.258 kb on + strand, within HMPREF1078_RS05505 at 391.258 kb on + strand, within HMPREF1078_RS05505 at 391.258 kb on + strand, within HMPREF1078_RS05505 at 391.259 kb on - strand, within HMPREF1078_RS05505 at 391.259 kb on - strand, within HMPREF1078_RS05505 at 391.279 kb on - strand, within HMPREF1078_RS05505 at 391.367 kb on - strand at 391.416 kb on + strand at 391.416 kb on + strand at 391.416 kb on + strand at 391.417 kb on - strand at 391.435 kb on + strand at 391.461 kb on + strand at 391.461 kb on + strand at 391.501 kb on + strand at 391.502 kb on - strand at 391.502 kb on - strand at 391.584 kb on + strand at 391.585 kb on - strand at 391.590 kb on + strand at 391.591 kb on - strand at 391.642 kb on + strand, within HMPREF1078_RS05510 at 391.642 kb on + strand, within HMPREF1078_RS05510 at 391.642 kb on + strand, within HMPREF1078_RS05510 at 391.642 kb on + strand, within HMPREF1078_RS05510 at 391.642 kb on + strand, within HMPREF1078_RS05510 at 391.642 kb on + strand, within HMPREF1078_RS05510 at 391.643 kb on - strand, within HMPREF1078_RS05510 at 391.643 kb on - strand, within HMPREF1078_RS05510 at 391.667 kb on + strand, within HMPREF1078_RS05510 at 391.667 kb on + strand, within HMPREF1078_RS05510 at 391.727 kb on - strand, within HMPREF1078_RS05510 at 391.727 kb on - strand, within HMPREF1078_RS05510 at 391.789 kb on - strand, within HMPREF1078_RS05510 at 391.792 kb on - strand, within HMPREF1078_RS05510 at 392.016 kb on + strand, within HMPREF1078_RS05510 at 392.038 kb on - strand, within HMPREF1078_RS05510 at 392.072 kb on - strand, within HMPREF1078_RS05510 at 392.192 kb on - strand, within HMPREF1078_RS05510 at 392.192 kb on - strand, within HMPREF1078_RS05510 at 392.203 kb on - strand, within HMPREF1078_RS05510 at 392.210 kb on + strand, within HMPREF1078_RS05510 at 392.245 kb on + strand, within HMPREF1078_RS05510 at 392.269 kb on + strand, within HMPREF1078_RS05510 at 392.269 kb on + strand, within HMPREF1078_RS05510 at 392.270 kb on - strand, within HMPREF1078_RS05510 at 392.270 kb on - strand, within HMPREF1078_RS05510 at 392.297 kb on + strand, within HMPREF1078_RS05510 at 392.332 kb on + strand, within HMPREF1078_RS05510 at 392.334 kb on + strand, within HMPREF1078_RS05510 at 392.389 kb on + strand, within HMPREF1078_RS05510 at 392.390 kb on - strand, within HMPREF1078_RS05510
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mg/mL (C) remove 389,419 - HMPREF1078_RS05500 0.37 -1.3 389,426 + HMPREF1078_RS05500 0.38 +0.7 389,426 + HMPREF1078_RS05500 0.38 -1.9 389,426 + HMPREF1078_RS05500 0.38 +0.3 389,426 + HMPREF1078_RS05500 0.38 -1.1 389,427 - HMPREF1078_RS05500 0.38 +2.3 389,427 - HMPREF1078_RS05500 0.38 -1.2 389,427 - HMPREF1078_RS05500 0.38 +0.7 389,478 - HMPREF1078_RS05500 0.41 +0.7 389,535 + HMPREF1078_RS05500 0.45 -3.2 389,535 + HMPREF1078_RS05500 0.45 +0.3 389,624 + HMPREF1078_RS05500 0.51 -0.1 389,625 - HMPREF1078_RS05500 0.51 -0.3 389,629 - HMPREF1078_RS05500 0.52 -2.0 389,682 + HMPREF1078_RS05500 0.55 -0.7 389,682 + HMPREF1078_RS05500 0.55 -0.3 389,682 + HMPREF1078_RS05500 0.55 -0.5 389,682 + HMPREF1078_RS05500 0.55 -1.7 389,683 - HMPREF1078_RS05500 0.56 -1.3 389,683 - HMPREF1078_RS05500 0.56 -0.7 389,684 + HMPREF1078_RS05500 0.56 -0.9 389,684 + HMPREF1078_RS05500 0.56 +1.3 389,684 + HMPREF1078_RS05500 0.56 +0.9 389,684 + HMPREF1078_RS05500 0.56 -1.3 389,685 - HMPREF1078_RS05500 0.56 -1.7 389,685 - HMPREF1078_RS05500 0.56 +2.3 389,685 - HMPREF1078_RS05500 0.56 -1.5 389,685 - HMPREF1078_RS05500 0.56 -1.4 389,690 + HMPREF1078_RS05500 0.56 -2.9 389,690 + HMPREF1078_RS05500 0.56 -2.1 389,690 + HMPREF1078_RS05500 0.56 -1.6 389,690 + HMPREF1078_RS05500 0.56 -0.7 389,690 + HMPREF1078_RS05500 0.56 -1.6 389,690 + HMPREF1078_RS05500 0.56 -2.4 389,690 + HMPREF1078_RS05500 0.56 -0.3 389,691 - HMPREF1078_RS05500 0.56 -0.3 389,691 - HMPREF1078_RS05500 0.56 -1.3 389,691 - HMPREF1078_RS05500 0.56 -0.3 389,691 - HMPREF1078_RS05500 0.56 +1.3 389,691 - HMPREF1078_RS05500 0.56 +1.1 389,691 - HMPREF1078_RS05500 0.56 -0.3 389,694 + HMPREF1078_RS05500 0.56 -0.7 389,695 - HMPREF1078_RS05500 0.56 -0.3 389,731 + HMPREF1078_RS05500 0.59 +0.1 389,731 + HMPREF1078_RS05500 0.59 -0.1 389,768 - HMPREF1078_RS05500 0.61 -0.1 389,859 + HMPREF1078_RS05500 0.68 -1.3 389,859 + HMPREF1078_RS05500 0.68 -2.9 389,892 + HMPREF1078_RS05500 0.70 -1.2 389,893 - HMPREF1078_RS05500 0.70 +0.3 389,893 - HMPREF1078_RS05500 0.70 -1.6 389,963 + HMPREF1078_RS05500 0.75 -1.5 389,963 + HMPREF1078_RS05500 0.75 -2.0 389,967 + HMPREF1078_RS05500 0.75 -1.5 389,967 + HMPREF1078_RS05500 0.75 -2.3 389,967 + HMPREF1078_RS05500 0.75 -1.9 389,967 - HMPREF1078_RS05500 0.75 +0.7 389,968 - HMPREF1078_RS05500 0.75 -1.9 389,968 - HMPREF1078_RS05500 0.75 -0.9 389,969 + HMPREF1078_RS05500 0.76 -3.6 389,970 - HMPREF1078_RS05500 0.76 -1.1 390,127 - HMPREF1078_RS05500 0.87 -2.1 390,150 + HMPREF1078_RS05500 0.88 -0.3 390,172 + HMPREF1078_RS05500 0.90 -0.5 390,255 + -2.3 390,255 + -0.3 390,255 + -0.5 390,255 + -1.2 390,256 - -1.4 390,256 - -0.7 390,256 - +1.3 390,256 - -0.1 390,347 - -0.9 390,358 - -0.9 390,358 - +2.8 390,359 + -3.0 390,360 - -1.2 390,360 - -1.8 390,364 + -3.0 390,364 + -1.9 390,366 + -1.2 390,366 + -2.0 390,379 + -1.6 390,381 + -1.1 390,388 + -0.5 390,391 - -0.7 390,401 + -0.7 390,451 + -2.7 390,453 + -1.3 390,453 + -0.9 390,474 + -0.5 390,475 - -0.9 390,475 - -0.5 390,477 + -2.3 390,478 - +0.7 390,479 + -0.7 390,480 - -0.3 390,500 + -1.4 390,500 + -0.7 390,500 + -1.7 390,565 - HMPREF1078_RS05505 0.15 -0.5 390,669 + HMPREF1078_RS05505 0.25 -2.5 390,669 + HMPREF1078_RS05505 0.25 -1.4 390,740 + HMPREF1078_RS05505 0.32 +0.7 390,820 - HMPREF1078_RS05505 0.40 +1.3 390,889 + HMPREF1078_RS05505 0.47 -2.1 390,890 - HMPREF1078_RS05505 0.47 +0.3 390,909 + HMPREF1078_RS05505 0.49 -1.4 390,909 + HMPREF1078_RS05505 0.49 -2.1 390,986 - HMPREF1078_RS05505 0.56 -1.9 390,988 - HMPREF1078_RS05505 0.56 -0.7 390,996 + HMPREF1078_RS05505 0.57 -2.0 391,098 - HMPREF1078_RS05505 0.67 -0.3 391,140 + HMPREF1078_RS05505 0.71 -0.3 391,140 + HMPREF1078_RS05505 0.71 -2.3 391,140 + HMPREF1078_RS05505 0.71 -2.1 391,140 + HMPREF1078_RS05505 0.71 -2.1 391,140 + HMPREF1078_RS05505 0.71 -2.4 391,141 - HMPREF1078_RS05505 0.71 -1.9 391,175 - HMPREF1078_RS05505 0.75 -0.3 391,257 - HMPREF1078_RS05505 0.82 -1.1 391,258 + HMPREF1078_RS05505 0.83 -1.4 391,258 + HMPREF1078_RS05505 0.83 -1.1 391,258 + HMPREF1078_RS05505 0.83 -1.4 391,259 - HMPREF1078_RS05505 0.83 -1.5 391,259 - HMPREF1078_RS05505 0.83 -1.2 391,279 - HMPREF1078_RS05505 0.85 -0.5 391,367 - -1.5 391,416 + -1.2 391,416 + -0.1 391,416 + -0.9 391,417 - -0.3 391,435 + +0.3 391,461 + -0.5 391,461 + -0.3 391,501 + -0.1 391,502 - +0.3 391,502 - -1.1 391,584 + -0.5 391,585 - -0.7 391,590 + -1.5 391,591 - -2.4 391,642 + HMPREF1078_RS05510 0.13 -1.2 391,642 + HMPREF1078_RS05510 0.13 -0.7 391,642 + HMPREF1078_RS05510 0.13 -2.1 391,642 + HMPREF1078_RS05510 0.13 -2.4 391,642 + HMPREF1078_RS05510 0.13 -2.1 391,642 + HMPREF1078_RS05510 0.13 +0.3 391,643 - HMPREF1078_RS05510 0.13 +0.7 391,643 - HMPREF1078_RS05510 0.13 +1.3 391,667 + HMPREF1078_RS05510 0.14 +0.7 391,667 + HMPREF1078_RS05510 0.14 +0.3 391,727 - HMPREF1078_RS05510 0.18 -1.8 391,727 - HMPREF1078_RS05510 0.18 -0.9 391,789 - HMPREF1078_RS05510 0.22 -1.5 391,792 - HMPREF1078_RS05510 0.22 +0.7 392,016 + HMPREF1078_RS05510 0.36 -1.2 392,038 - HMPREF1078_RS05510 0.38 -2.5 392,072 - HMPREF1078_RS05510 0.40 -1.2 392,192 - HMPREF1078_RS05510 0.48 -1.3 392,192 - HMPREF1078_RS05510 0.48 -2.6 392,203 - HMPREF1078_RS05510 0.48 -0.1 392,210 + HMPREF1078_RS05510 0.49 -2.3 392,245 + HMPREF1078_RS05510 0.51 -0.5 392,269 + HMPREF1078_RS05510 0.53 +0.3 392,269 + HMPREF1078_RS05510 0.53 -0.4 392,270 - HMPREF1078_RS05510 0.53 +0.3 392,270 - HMPREF1078_RS05510 0.53 +0.7 392,297 + HMPREF1078_RS05510 0.54 -0.3 392,332 + HMPREF1078_RS05510 0.57 +2.3 392,334 + HMPREF1078_RS05510 0.57 -2.1 392,389 + HMPREF1078_RS05510 0.60 +0.5 392,390 - HMPREF1078_RS05510 0.60 -0.5
Or see this region's nucleotide sequence