Experiment: D-Mannose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS04810 and HMPREF1078_RS04815 are separated by 199 nucleotides HMPREF1078_RS04815 and HMPREF1078_RS04820 are separated by 33 nucleotides HMPREF1078_RS04820 and HMPREF1078_RS04825 are separated by 127 nucleotides
HMPREF1078_RS04810: HMPREF1078_RS04810 - translation initiation factor, at 212,019 to 212,363
_RS04810
HMPREF1078_RS04815: HMPREF1078_RS04815 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, at 212,563 to 213,039
_RS04815
HMPREF1078_RS04820: HMPREF1078_RS04820 - type IX secretion system outer membrane channel protein PorV, at 213,073 to 214,239
_RS04820
HMPREF1078_RS04825: HMPREF1078_RS04825 - decaprenyl-phosphate phosphoribosyltransferase, at 214,367 to 215,263
_RS04825
Position (kb) 213
214
215 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 212.355 kb on - strand at 212.364 kb on - strand at 212.420 kb on + strand at 212.420 kb on + strand at 212.420 kb on + strand at 212.420 kb on + strand at 212.421 kb on - strand at 212.421 kb on - strand at 212.421 kb on - strand at 212.421 kb on - strand at 212.429 kb on - strand at 212.429 kb on - strand at 212.468 kb on + strand at 212.468 kb on + strand at 212.469 kb on - strand at 212.469 kb on - strand at 212.470 kb on + strand at 212.493 kb on - strand at 212.527 kb on + strand at 212.538 kb on + strand at 212.560 kb on - strand at 212.565 kb on - strand at 213.226 kb on - strand, within HMPREF1078_RS04820 at 213.288 kb on - strand, within HMPREF1078_RS04820 at 213.288 kb on - strand, within HMPREF1078_RS04820 at 213.288 kb on - strand, within HMPREF1078_RS04820 at 213.292 kb on - strand, within HMPREF1078_RS04820 at 213.292 kb on - strand, within HMPREF1078_RS04820 at 213.292 kb on - strand, within HMPREF1078_RS04820 at 213.388 kb on - strand, within HMPREF1078_RS04820 at 213.388 kb on - strand, within HMPREF1078_RS04820 at 213.462 kb on - strand, within HMPREF1078_RS04820 at 213.498 kb on - strand, within HMPREF1078_RS04820 at 213.651 kb on - strand, within HMPREF1078_RS04820 at 213.762 kb on - strand, within HMPREF1078_RS04820 at 213.869 kb on - strand, within HMPREF1078_RS04820 at 213.987 kb on - strand, within HMPREF1078_RS04820 at 213.987 kb on - strand, within HMPREF1078_RS04820 at 214.009 kb on - strand, within HMPREF1078_RS04820 at 214.009 kb on - strand, within HMPREF1078_RS04820 at 214.202 kb on - strand at 214.207 kb on - strand at 214.231 kb on - strand at 214.231 kb on - strand at 214.235 kb on - strand at 214.235 kb on - strand at 214.235 kb on - strand at 214.235 kb on - strand at 214.235 kb on - strand at 214.240 kb on - strand at 214.240 kb on - strand at 214.240 kb on - strand at 214.252 kb on - strand at 214.256 kb on - strand at 214.330 kb on + strand at 214.377 kb on + strand at 214.378 kb on - strand at 214.404 kb on + strand at 214.447 kb on - strand at 214.447 kb on - strand at 214.548 kb on + strand, within HMPREF1078_RS04825 at 214.548 kb on + strand, within HMPREF1078_RS04825 at 214.549 kb on - strand, within HMPREF1078_RS04825 at 214.549 kb on - strand, within HMPREF1078_RS04825 at 214.550 kb on + strand, within HMPREF1078_RS04825 at 214.551 kb on - strand, within HMPREF1078_RS04825 at 214.668 kb on + strand, within HMPREF1078_RS04825 at 214.669 kb on - strand, within HMPREF1078_RS04825 at 214.670 kb on + strand, within HMPREF1078_RS04825 at 214.686 kb on + strand, within HMPREF1078_RS04825 at 214.686 kb on + strand, within HMPREF1078_RS04825 at 214.687 kb on - strand, within HMPREF1078_RS04825 at 214.742 kb on + strand, within HMPREF1078_RS04825 at 214.742 kb on + strand, within HMPREF1078_RS04825 at 214.742 kb on + strand, within HMPREF1078_RS04825 at 214.743 kb on - strand, within HMPREF1078_RS04825 at 214.744 kb on + strand, within HMPREF1078_RS04825 at 214.745 kb on - strand, within HMPREF1078_RS04825 at 214.745 kb on - strand, within HMPREF1078_RS04825 at 214.745 kb on - strand, within HMPREF1078_RS04825 at 214.759 kb on - strand, within HMPREF1078_RS04825 at 214.765 kb on + strand, within HMPREF1078_RS04825 at 214.765 kb on + strand, within HMPREF1078_RS04825 at 214.765 kb on + strand, within HMPREF1078_RS04825 at 214.786 kb on - strand, within HMPREF1078_RS04825 at 214.794 kb on + strand, within HMPREF1078_RS04825 at 214.795 kb on - strand, within HMPREF1078_RS04825 at 214.990 kb on + strand, within HMPREF1078_RS04825 at 214.990 kb on + strand, within HMPREF1078_RS04825 at 214.991 kb on - strand, within HMPREF1078_RS04825 at 215.048 kb on + strand, within HMPREF1078_RS04825 at 215.048 kb on + strand, within HMPREF1078_RS04825 at 215.049 kb on - strand, within HMPREF1078_RS04825 at 215.052 kb on + strand, within HMPREF1078_RS04825 at 215.052 kb on + strand, within HMPREF1078_RS04825 at 215.053 kb on - strand, within HMPREF1078_RS04825 at 215.057 kb on + strand, within HMPREF1078_RS04825 at 215.057 kb on + strand, within HMPREF1078_RS04825 at 215.097 kb on - strand, within HMPREF1078_RS04825 at 215.102 kb on + strand, within HMPREF1078_RS04825 at 215.102 kb on + strand, within HMPREF1078_RS04825 at 215.103 kb on - strand, within HMPREF1078_RS04825 at 215.196 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mg/mL (C) remove 212,355 - -1.4 212,364 - -0.0 212,420 + -1.4 212,420 + +0.2 212,420 + -0.1 212,420 + -0.2 212,421 - +0.2 212,421 - +0.2 212,421 - +0.2 212,421 - -0.2 212,429 - +0.9 212,429 - -1.2 212,468 + +0.3 212,468 + -0.8 212,469 - -0.5 212,469 - -0.7 212,470 + +1.7 212,493 - -1.1 212,527 + +0.0 212,538 + -0.4 212,560 - +1.0 212,565 - +0.1 213,226 - HMPREF1078_RS04820 0.13 -2.4 213,288 - HMPREF1078_RS04820 0.18 -1.5 213,288 - HMPREF1078_RS04820 0.18 -2.6 213,288 - HMPREF1078_RS04820 0.18 -0.7 213,292 - HMPREF1078_RS04820 0.19 -3.7 213,292 - HMPREF1078_RS04820 0.19 -1.2 213,292 - HMPREF1078_RS04820 0.19 +0.3 213,388 - HMPREF1078_RS04820 0.27 -0.5 213,388 - HMPREF1078_RS04820 0.27 -0.3 213,462 - HMPREF1078_RS04820 0.33 -1.9 213,498 - HMPREF1078_RS04820 0.36 -1.3 213,651 - HMPREF1078_RS04820 0.50 -2.9 213,762 - HMPREF1078_RS04820 0.59 -1.0 213,869 - HMPREF1078_RS04820 0.68 -2.8 213,987 - HMPREF1078_RS04820 0.78 -1.9 213,987 - HMPREF1078_RS04820 0.78 -0.0 214,009 - HMPREF1078_RS04820 0.80 -0.7 214,009 - HMPREF1078_RS04820 0.80 -2.8 214,202 - -1.7 214,207 - +1.0 214,231 - +0.7 214,231 - -1.0 214,235 - -1.0 214,235 - +0.3 214,235 - -1.4 214,235 - -0.0 214,235 - -0.7 214,240 - -1.2 214,240 - -1.2 214,240 - -2.5 214,252 - -1.2 214,256 - +0.2 214,330 + +0.3 214,377 + -1.7 214,378 - -1.7 214,404 + +1.4 214,447 - -1.6 214,447 - -1.8 214,548 + HMPREF1078_RS04825 0.20 -2.6 214,548 + HMPREF1078_RS04825 0.20 -0.9 214,549 - HMPREF1078_RS04825 0.20 -3.6 214,549 - HMPREF1078_RS04825 0.20 -1.4 214,550 + HMPREF1078_RS04825 0.20 -4.0 214,551 - HMPREF1078_RS04825 0.21 -2.2 214,668 + HMPREF1078_RS04825 0.34 -0.8 214,669 - HMPREF1078_RS04825 0.34 -1.2 214,670 + HMPREF1078_RS04825 0.34 -2.4 214,686 + HMPREF1078_RS04825 0.36 -2.5 214,686 + HMPREF1078_RS04825 0.36 -1.5 214,687 - HMPREF1078_RS04825 0.36 -0.1 214,742 + HMPREF1078_RS04825 0.42 -3.9 214,742 + HMPREF1078_RS04825 0.42 -3.6 214,742 + HMPREF1078_RS04825 0.42 -3.0 214,743 - HMPREF1078_RS04825 0.42 -2.5 214,744 + HMPREF1078_RS04825 0.42 -2.0 214,745 - HMPREF1078_RS04825 0.42 -1.7 214,745 - HMPREF1078_RS04825 0.42 -0.4 214,745 - HMPREF1078_RS04825 0.42 -2.3 214,759 - HMPREF1078_RS04825 0.44 -0.2 214,765 + HMPREF1078_RS04825 0.44 -1.6 214,765 + HMPREF1078_RS04825 0.44 -3.2 214,765 + HMPREF1078_RS04825 0.44 -2.0 214,786 - HMPREF1078_RS04825 0.47 -1.6 214,794 + HMPREF1078_RS04825 0.48 -3.0 214,795 - HMPREF1078_RS04825 0.48 +0.5 214,990 + HMPREF1078_RS04825 0.69 -2.0 214,990 + HMPREF1078_RS04825 0.69 -3.3 214,991 - HMPREF1078_RS04825 0.70 -1.5 215,048 + HMPREF1078_RS04825 0.76 -2.0 215,048 + HMPREF1078_RS04825 0.76 -2.0 215,049 - HMPREF1078_RS04825 0.76 -1.7 215,052 + HMPREF1078_RS04825 0.76 -1.8 215,052 + HMPREF1078_RS04825 0.76 -2.7 215,053 - HMPREF1078_RS04825 0.76 -4.2 215,057 + HMPREF1078_RS04825 0.77 -1.7 215,057 + HMPREF1078_RS04825 0.77 -0.2 215,097 - HMPREF1078_RS04825 0.81 -2.7 215,102 + HMPREF1078_RS04825 0.82 -3.5 215,102 + HMPREF1078_RS04825 0.82 -2.4 215,103 - HMPREF1078_RS04825 0.82 -2.3 215,196 + -4.2
Or see this region's nucleotide sequence