Experiment: D-Mannose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS04655 and HMPREF1078_RS04660 are separated by 3 nucleotides HMPREF1078_RS04660 and HMPREF1078_RS04665 are separated by 26 nucleotides
HMPREF1078_RS04655: HMPREF1078_RS04655 - penicillin-binding protein, at 171,251 to 173,449
_RS04655
HMPREF1078_RS04660: HMPREF1078_RS04660 - FtsL-like putative cell division protein, at 173,453 to 173,797
_RS04660
HMPREF1078_RS04665: HMPREF1078_RS04665 - 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH, at 173,824 to 174,750
_RS04665
Position (kb) 173
174 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 173.461 kb on - strand at 173.499 kb on - strand, within HMPREF1078_RS04660 at 173.514 kb on - strand, within HMPREF1078_RS04660 at 173.833 kb on - strand at 173.833 kb on - strand at 173.836 kb on - strand at 173.855 kb on - strand at 174.143 kb on - strand, within HMPREF1078_RS04665 at 174.191 kb on - strand, within HMPREF1078_RS04665 at 174.322 kb on - strand, within HMPREF1078_RS04665 at 174.322 kb on - strand, within HMPREF1078_RS04665 at 174.322 kb on - strand, within HMPREF1078_RS04665 at 174.322 kb on - strand, within HMPREF1078_RS04665 at 174.324 kb on - strand, within HMPREF1078_RS04665 at 174.328 kb on - strand, within HMPREF1078_RS04665 at 174.328 kb on - strand, within HMPREF1078_RS04665 at 174.328 kb on - strand, within HMPREF1078_RS04665 at 174.328 kb on - strand, within HMPREF1078_RS04665 at 174.331 kb on - strand, within HMPREF1078_RS04665 at 174.331 kb on - strand, within HMPREF1078_RS04665 at 174.376 kb on - strand, within HMPREF1078_RS04665 at 174.504 kb on - strand, within HMPREF1078_RS04665 at 174.506 kb on - strand, within HMPREF1078_RS04665 at 174.510 kb on - strand, within HMPREF1078_RS04665 at 174.666 kb on - strand at 174.666 kb on - strand at 174.760 kb on - strand at 174.797 kb on - strand at 174.797 kb on - strand at 174.797 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mg/mL (C) remove 173,461 - -2.9 173,499 - HMPREF1078_RS04660 0.13 -1.8 173,514 - HMPREF1078_RS04660 0.18 -1.6 173,833 - -0.3 173,833 - -1.9 173,836 - -3.2 173,855 - -0.9 174,143 - HMPREF1078_RS04665 0.34 -1.4 174,191 - HMPREF1078_RS04665 0.40 +0.7 174,322 - HMPREF1078_RS04665 0.54 -0.3 174,322 - HMPREF1078_RS04665 0.54 -2.1 174,322 - HMPREF1078_RS04665 0.54 -1.4 174,322 - HMPREF1078_RS04665 0.54 -0.0 174,324 - HMPREF1078_RS04665 0.54 -0.0 174,328 - HMPREF1078_RS04665 0.54 -0.9 174,328 - HMPREF1078_RS04665 0.54 -0.9 174,328 - HMPREF1078_RS04665 0.54 -1.4 174,328 - HMPREF1078_RS04665 0.54 -0.3 174,331 - HMPREF1078_RS04665 0.55 +2.1 174,331 - HMPREF1078_RS04665 0.55 -0.7 174,376 - HMPREF1078_RS04665 0.60 -2.3 174,504 - HMPREF1078_RS04665 0.73 +1.0 174,506 - HMPREF1078_RS04665 0.74 -0.6 174,510 - HMPREF1078_RS04665 0.74 -0.0 174,666 - -0.7 174,666 - +2.3 174,760 - +1.2 174,797 - +0.8 174,797 - +0.1 174,797 - -0.4
Or see this region's nucleotide sequence