Experiment: D-Mannose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS03465 and HMPREF1078_RS03470 are separated by 436 nucleotides HMPREF1078_RS03470 and HMPREF1078_RS03475 overlap by 4 nucleotides HMPREF1078_RS03475 and HMPREF1078_RS03480 overlap by 10 nucleotides
HMPREF1078_RS03465: HMPREF1078_RS03465 - DUF5686 and carboxypeptidase-like regulatory domain-containing protein, at 817,041 to 819,596
_RS03465
HMPREF1078_RS03470: HMPREF1078_RS03470 - bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase, at 820,033 to 820,872
_RS03470
HMPREF1078_RS03475: HMPREF1078_RS03475 - thiamine phosphate synthase, at 820,869 to 821,468
_RS03475
HMPREF1078_RS03480: HMPREF1078_RS03480 - thiamine phosphate synthase, at 821,459 to 822,196
_RS03480
Position (kb) 820
821 Strain fitness (log2 ratio) -2
-1
0
1
2 at 819.148 kb on + strand, within HMPREF1078_RS03465 at 819.149 kb on - strand, within HMPREF1078_RS03465 at 819.157 kb on + strand, within HMPREF1078_RS03465 at 819.157 kb on + strand, within HMPREF1078_RS03465 at 819.157 kb on + strand, within HMPREF1078_RS03465 at 819.166 kb on + strand, within HMPREF1078_RS03465 at 819.225 kb on - strand, within HMPREF1078_RS03465 at 819.251 kb on - strand, within HMPREF1078_RS03465 at 819.251 kb on - strand, within HMPREF1078_RS03465 at 819.323 kb on + strand, within HMPREF1078_RS03465 at 819.333 kb on - strand, within HMPREF1078_RS03465 at 819.369 kb on + strand at 819.373 kb on + strand at 819.373 kb on + strand at 819.373 kb on + strand at 819.373 kb on + strand at 819.374 kb on - strand at 819.374 kb on - strand at 819.378 kb on + strand at 819.379 kb on - strand at 819.466 kb on - strand at 819.466 kb on - strand at 819.467 kb on + strand at 819.467 kb on + strand at 819.467 kb on + strand at 819.478 kb on + strand at 819.479 kb on - strand at 819.479 kb on - strand at 819.479 kb on - strand at 819.484 kb on - strand at 819.523 kb on - strand at 819.527 kb on + strand at 819.527 kb on + strand at 819.528 kb on - strand at 819.528 kb on - strand at 819.530 kb on + strand at 819.531 kb on - strand at 819.558 kb on - strand at 819.671 kb on - strand at 819.685 kb on + strand at 819.686 kb on - strand at 819.697 kb on + strand at 819.717 kb on - strand at 819.721 kb on + strand at 819.754 kb on + strand at 819.765 kb on + strand at 819.766 kb on - strand at 819.879 kb on + strand at 819.890 kb on + strand at 819.953 kb on - strand at 819.954 kb on + strand at 819.955 kb on - strand at 819.955 kb on - strand at 819.955 kb on - strand at 820.024 kb on + strand at 820.025 kb on - strand at 820.028 kb on + strand at 820.041 kb on - strand at 820.071 kb on + strand at 820.071 kb on + strand at 820.071 kb on + strand at 820.071 kb on + strand at 820.072 kb on - strand at 820.074 kb on + strand at 820.075 kb on - strand at 820.075 kb on - strand at 820.075 kb on - strand at 820.109 kb on + strand at 820.109 kb on + strand at 820.197 kb on - strand, within HMPREF1078_RS03470 at 820.206 kb on - strand, within HMPREF1078_RS03470 at 820.206 kb on - strand, within HMPREF1078_RS03470 at 820.262 kb on + strand, within HMPREF1078_RS03470 at 820.297 kb on - strand, within HMPREF1078_RS03470 at 820.371 kb on + strand, within HMPREF1078_RS03470 at 820.401 kb on - strand, within HMPREF1078_RS03470 at 820.402 kb on + strand, within HMPREF1078_RS03470 at 820.503 kb on - strand, within HMPREF1078_RS03470 at 820.672 kb on - strand, within HMPREF1078_RS03470 at 820.715 kb on - strand, within HMPREF1078_RS03470 at 820.716 kb on + strand, within HMPREF1078_RS03470 at 820.748 kb on + strand, within HMPREF1078_RS03470 at 820.749 kb on - strand, within HMPREF1078_RS03470 at 820.749 kb on - strand, within HMPREF1078_RS03470 at 820.869 kb on - strand at 820.889 kb on + strand at 821.028 kb on + strand, within HMPREF1078_RS03475 at 821.071 kb on + strand, within HMPREF1078_RS03475 at 821.072 kb on - strand, within HMPREF1078_RS03475 at 821.077 kb on - strand, within HMPREF1078_RS03475 at 821.197 kb on - strand, within HMPREF1078_RS03475 at 821.227 kb on + strand, within HMPREF1078_RS03475 at 821.317 kb on + strand, within HMPREF1078_RS03475 at 821.317 kb on + strand, within HMPREF1078_RS03475 at 821.318 kb on - strand, within HMPREF1078_RS03475 at 821.327 kb on - strand, within HMPREF1078_RS03475 at 821.327 kb on - strand, within HMPREF1078_RS03475 at 821.350 kb on + strand, within HMPREF1078_RS03475 at 821.417 kb on + strand at 821.430 kb on - strand at 821.443 kb on - strand at 821.444 kb on + strand at 821.444 kb on + strand at 821.444 kb on + strand at 821.445 kb on - strand at 821.504 kb on + strand at 821.505 kb on - strand at 821.574 kb on - strand, within HMPREF1078_RS03480 at 821.605 kb on + strand, within HMPREF1078_RS03480 at 821.605 kb on + strand, within HMPREF1078_RS03480 at 821.800 kb on + strand, within HMPREF1078_RS03480
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mg/mL (C) remove 819,148 + HMPREF1078_RS03465 0.82 +1.3 819,149 - HMPREF1078_RS03465 0.82 +0.6 819,157 + HMPREF1078_RS03465 0.83 -1.3 819,157 + HMPREF1078_RS03465 0.83 -0.9 819,157 + HMPREF1078_RS03465 0.83 -1.1 819,166 + HMPREF1078_RS03465 0.83 +0.7 819,225 - HMPREF1078_RS03465 0.85 +0.6 819,251 - HMPREF1078_RS03465 0.86 +1.1 819,251 - HMPREF1078_RS03465 0.86 -0.6 819,323 + HMPREF1078_RS03465 0.89 -0.1 819,333 - HMPREF1078_RS03465 0.90 +0.1 819,369 + +1.6 819,373 + -0.5 819,373 + -1.7 819,373 + -0.6 819,373 + +1.4 819,374 - -0.9 819,374 - +1.0 819,378 + -0.5 819,379 - -0.0 819,466 - -0.7 819,466 - -0.5 819,467 + -0.3 819,467 + +0.4 819,467 + +0.5 819,478 + -0.1 819,479 - -1.5 819,479 - +1.5 819,479 - -0.9 819,484 - -0.0 819,523 - -0.6 819,527 + -0.3 819,527 + -1.1 819,528 - +0.6 819,528 - -1.4 819,530 + -0.1 819,531 - +0.7 819,558 - -0.4 819,671 - +1.8 819,685 + +0.7 819,686 - +0.5 819,697 + +0.9 819,717 - +1.3 819,721 + -2.2 819,754 + +1.5 819,765 + -1.1 819,766 - -1.0 819,879 + -1.8 819,890 + -0.9 819,953 - +0.1 819,954 + -0.7 819,955 - -1.5 819,955 - -0.9 819,955 - -2.5 820,024 + -0.4 820,025 - -0.6 820,028 + -0.1 820,041 - -0.3 820,071 + -0.3 820,071 + -0.4 820,071 + +1.7 820,071 + -0.4 820,072 - -0.5 820,074 + -0.9 820,075 - +0.3 820,075 - +0.2 820,075 - +0.7 820,109 + +1.0 820,109 + -0.4 820,197 - HMPREF1078_RS03470 0.20 +0.7 820,206 - HMPREF1078_RS03470 0.21 -0.7 820,206 - HMPREF1078_RS03470 0.21 -1.0 820,262 + HMPREF1078_RS03470 0.27 -0.3 820,297 - HMPREF1078_RS03470 0.31 +0.1 820,371 + HMPREF1078_RS03470 0.40 -0.9 820,401 - HMPREF1078_RS03470 0.44 +1.1 820,402 + HMPREF1078_RS03470 0.44 -2.7 820,503 - HMPREF1078_RS03470 0.56 -0.3 820,672 - HMPREF1078_RS03470 0.76 -0.1 820,715 - HMPREF1078_RS03470 0.81 +0.0 820,716 + HMPREF1078_RS03470 0.81 +0.2 820,748 + HMPREF1078_RS03470 0.85 -1.4 820,749 - HMPREF1078_RS03470 0.85 -1.2 820,749 - HMPREF1078_RS03470 0.85 -0.1 820,869 - +0.7 820,889 + +0.6 821,028 + HMPREF1078_RS03475 0.27 +0.6 821,071 + HMPREF1078_RS03475 0.34 -0.2 821,072 - HMPREF1078_RS03475 0.34 -0.5 821,077 - HMPREF1078_RS03475 0.35 +1.9 821,197 - HMPREF1078_RS03475 0.55 +2.3 821,227 + HMPREF1078_RS03475 0.60 -0.1 821,317 + HMPREF1078_RS03475 0.75 -1.4 821,317 + HMPREF1078_RS03475 0.75 -1.7 821,318 - HMPREF1078_RS03475 0.75 +0.6 821,327 - HMPREF1078_RS03475 0.76 -0.3 821,327 - HMPREF1078_RS03475 0.76 -1.8 821,350 + HMPREF1078_RS03475 0.80 -0.9 821,417 + -1.3 821,430 - -0.6 821,443 - +1.0 821,444 + +0.2 821,444 + +1.6 821,444 + +1.5 821,445 - +0.1 821,504 + -0.9 821,505 - +0.2 821,574 - HMPREF1078_RS03480 0.16 +0.3 821,605 + HMPREF1078_RS03480 0.20 -2.5 821,605 + HMPREF1078_RS03480 0.20 -0.8 821,800 + HMPREF1078_RS03480 0.46 -1.2
Or see this region's nucleotide sequence