Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS03090

Experiment: D-Mannose 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS03085 and HMPREF1078_RS03090 are separated by 506 nucleotidesHMPREF1078_RS03090 and HMPREF1078_RS19720 are separated by 144 nucleotidesHMPREF1078_RS19720 and HMPREF1078_RS03095 are separated by 18 nucleotidesHMPREF1078_RS03095 and HMPREF1078_RS03100 are separated by 205 nucleotides HMPREF1078_RS03085: HMPREF1078_RS03085 - phage integrase SAM-like domain-containing protein, at 736,656 to 738,137 _RS03085 HMPREF1078_RS03090: HMPREF1078_RS03090 - helix-turn-helix transcriptional regulator, at 738,644 to 739,102 _RS03090 HMPREF1078_RS19720: HMPREF1078_RS19720 - hypothetical protein, at 739,247 to 739,438 _RS19720 HMPREF1078_RS03095: HMPREF1078_RS03095 - hypothetical protein, at 739,457 to 739,771 _RS03095 HMPREF1078_RS03100: HMPREF1078_RS03100 - hypothetical protein, at 739,977 to 740,180 _RS03100 Position (kb) 738 739 740Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 737.656 kb on + strand, within HMPREF1078_RS03085at 737.656 kb on + strand, within HMPREF1078_RS03085at 737.656 kb on + strand, within HMPREF1078_RS03085at 737.657 kb on - strand, within HMPREF1078_RS03085at 737.706 kb on + strand, within HMPREF1078_RS03085at 737.707 kb on - strand, within HMPREF1078_RS03085at 737.741 kb on + strand, within HMPREF1078_RS03085at 737.901 kb on + strand, within HMPREF1078_RS03085at 737.902 kb on - strand, within HMPREF1078_RS03085at 737.902 kb on - strand, within HMPREF1078_RS03085at 737.916 kb on + strand, within HMPREF1078_RS03085at 737.917 kb on - strand, within HMPREF1078_RS03085at 737.917 kb on - strand, within HMPREF1078_RS03085at 737.941 kb on - strand, within HMPREF1078_RS03085at 737.943 kb on - strand, within HMPREF1078_RS03085at 737.943 kb on - strand, within HMPREF1078_RS03085at 737.944 kb on + strand, within HMPREF1078_RS03085at 737.944 kb on + strand, within HMPREF1078_RS03085at 737.944 kb on + strand, within HMPREF1078_RS03085at 737.945 kb on - strand, within HMPREF1078_RS03085at 737.945 kb on - strand, within HMPREF1078_RS03085at 737.945 kb on - strand, within HMPREF1078_RS03085at 737.945 kb on - strand, within HMPREF1078_RS03085at 738.156 kb on + strandat 738.164 kb on + strandat 738.169 kb on + strandat 738.169 kb on + strandat 738.175 kb on + strandat 738.176 kb on - strandat 738.188 kb on + strandat 738.196 kb on + strandat 738.237 kb on - strandat 738.239 kb on - strandat 738.239 kb on - strandat 738.253 kb on + strandat 738.254 kb on - strandat 738.281 kb on - strandat 738.284 kb on + strandat 738.285 kb on - strandat 738.297 kb on + strandat 738.298 kb on - strandat 738.298 kb on - strandat 738.298 kb on - strandat 738.329 kb on - strandat 738.339 kb on + strandat 738.342 kb on - strandat 738.342 kb on - strandat 738.342 kb on - strandat 738.421 kb on + strandat 738.437 kb on - strandat 738.440 kb on - strandat 738.444 kb on - strandat 738.456 kb on + strandat 738.456 kb on + strandat 738.456 kb on + strandat 738.457 kb on - strandat 738.506 kb on - strandat 738.506 kb on - strandat 738.565 kb on - strandat 738.565 kb on - strandat 738.578 kb on - strandat 738.622 kb on + strandat 738.646 kb on - strandat 738.665 kb on + strandat 738.668 kb on + strandat 738.676 kb on + strandat 738.676 kb on + strandat 738.737 kb on + strand, within HMPREF1078_RS03090at 738.738 kb on - strand, within HMPREF1078_RS03090at 738.738 kb on - strand, within HMPREF1078_RS03090at 738.801 kb on - strand, within HMPREF1078_RS03090at 738.807 kb on - strand, within HMPREF1078_RS03090at 738.807 kb on - strand, within HMPREF1078_RS03090at 738.827 kb on + strand, within HMPREF1078_RS03090at 738.827 kb on + strand, within HMPREF1078_RS03090at 738.828 kb on - strand, within HMPREF1078_RS03090at 738.880 kb on + strand, within HMPREF1078_RS03090at 738.880 kb on + strand, within HMPREF1078_RS03090at 738.880 kb on + strand, within HMPREF1078_RS03090at 738.881 kb on - strand, within HMPREF1078_RS03090at 738.882 kb on - strand, within HMPREF1078_RS03090at 738.883 kb on + strand, within HMPREF1078_RS03090at 738.883 kb on + strand, within HMPREF1078_RS03090at 738.883 kb on + strand, within HMPREF1078_RS03090at 738.883 kb on + strand, within HMPREF1078_RS03090at 738.884 kb on - strand, within HMPREF1078_RS03090at 738.884 kb on - strand, within HMPREF1078_RS03090at 738.884 kb on - strand, within HMPREF1078_RS03090at 738.884 kb on - strand, within HMPREF1078_RS03090at 738.884 kb on - strand, within HMPREF1078_RS03090at 738.884 kb on - strand, within HMPREF1078_RS03090at 738.977 kb on + strand, within HMPREF1078_RS03090at 739.007 kb on + strand, within HMPREF1078_RS03090at 739.048 kb on + strand, within HMPREF1078_RS03090at 739.048 kb on + strand, within HMPREF1078_RS03090at 739.049 kb on - strand, within HMPREF1078_RS03090at 739.073 kb on + strandat 739.074 kb on - strandat 739.074 kb on - strandat 739.074 kb on - strandat 739.074 kb on - strandat 739.088 kb on + strandat 739.088 kb on + strandat 739.089 kb on - strandat 739.089 kb on - strandat 739.097 kb on - strandat 739.120 kb on + strandat 739.121 kb on - strandat 739.121 kb on - strandat 739.190 kb on - strandat 739.225 kb on - strandat 739.246 kb on + strandat 739.296 kb on + strand, within HMPREF1078_RS19720at 739.372 kb on + strand, within HMPREF1078_RS19720at 739.373 kb on - strand, within HMPREF1078_RS19720at 739.457 kb on - strandat 739.487 kb on - strandat 739.494 kb on - strand, within HMPREF1078_RS03095at 739.779 kb on - strandat 739.834 kb on - strandat 739.860 kb on + strandat 739.907 kb on - strandat 739.908 kb on + strandat 739.914 kb on + strandat 739.921 kb on + strandat 739.972 kb on + strandat 739.973 kb on - strandat 740.017 kb on - strand, within HMPREF1078_RS03100at 740.090 kb on + strand, within HMPREF1078_RS03100at 740.091 kb on - strand, within HMPREF1078_RS03100

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose 10 mg/mL (C)
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737,656 + HMPREF1078_RS03085 0.67 +0.5
737,656 + HMPREF1078_RS03085 0.67 +0.5
737,656 + HMPREF1078_RS03085 0.67 -0.1
737,657 - HMPREF1078_RS03085 0.68 -0.3
737,706 + HMPREF1078_RS03085 0.71 +0.4
737,707 - HMPREF1078_RS03085 0.71 +0.1
737,741 + HMPREF1078_RS03085 0.73 -0.0
737,901 + HMPREF1078_RS03085 0.84 -0.3
737,902 - HMPREF1078_RS03085 0.84 -1.0
737,902 - HMPREF1078_RS03085 0.84 +0.1
737,916 + HMPREF1078_RS03085 0.85 -0.7
737,917 - HMPREF1078_RS03085 0.85 -0.2
737,917 - HMPREF1078_RS03085 0.85 +0.4
737,941 - HMPREF1078_RS03085 0.87 -0.9
737,943 - HMPREF1078_RS03085 0.87 -1.7
737,943 - HMPREF1078_RS03085 0.87 -0.1
737,944 + HMPREF1078_RS03085 0.87 -0.1
737,944 + HMPREF1078_RS03085 0.87 -2.0
737,944 + HMPREF1078_RS03085 0.87 -0.2
737,945 - HMPREF1078_RS03085 0.87 +0.4
737,945 - HMPREF1078_RS03085 0.87 +1.7
737,945 - HMPREF1078_RS03085 0.87 +0.7
737,945 - HMPREF1078_RS03085 0.87 -0.3
738,156 + -0.8
738,164 + -1.2
738,169 + -0.6
738,169 + -1.9
738,175 + -1.2
738,176 - -1.0
738,188 + -1.7
738,196 + +1.4
738,237 - -0.1
738,239 - +0.7
738,239 - -1.0
738,253 + +1.2
738,254 - +0.1
738,281 - -1.8
738,284 + -2.0
738,285 - -0.2
738,297 + -0.1
738,298 - -0.5
738,298 - -0.7
738,298 - +0.9
738,329 - +0.9
738,339 + -0.4
738,342 - +0.4
738,342 - -1.1
738,342 - -0.1
738,421 + +0.5
738,437 - -1.4
738,440 - -0.4
738,444 - +2.5
738,456 + +0.5
738,456 + -0.0
738,456 + -1.8
738,457 - -0.7
738,506 - -0.4
738,506 - -0.6
738,565 - -1.0
738,565 - +0.2
738,578 - -0.1
738,622 + +1.4
738,646 - -0.7
738,665 + -2.9
738,668 + -5.6
738,676 + -2.0
738,676 + -4.4
738,737 + HMPREF1078_RS03090 0.20 -3.2
738,738 - HMPREF1078_RS03090 0.20 -2.7
738,738 - HMPREF1078_RS03090 0.20 -1.7
738,801 - HMPREF1078_RS03090 0.34 -4.3
738,807 - HMPREF1078_RS03090 0.36 -3.5
738,807 - HMPREF1078_RS03090 0.36 -3.1
738,827 + HMPREF1078_RS03090 0.40 -3.5
738,827 + HMPREF1078_RS03090 0.40 -3.9
738,828 - HMPREF1078_RS03090 0.40 -4.7
738,880 + HMPREF1078_RS03090 0.51 -2.2
738,880 + HMPREF1078_RS03090 0.51 -3.2
738,880 + HMPREF1078_RS03090 0.51 -5.3
738,881 - HMPREF1078_RS03090 0.52 -2.4
738,882 - HMPREF1078_RS03090 0.52 -4.5
738,883 + HMPREF1078_RS03090 0.52 -1.6
738,883 + HMPREF1078_RS03090 0.52 -2.5
738,883 + HMPREF1078_RS03090 0.52 -2.4
738,883 + HMPREF1078_RS03090 0.52 -1.8
738,884 - HMPREF1078_RS03090 0.52 -4.6
738,884 - HMPREF1078_RS03090 0.52 -3.0
738,884 - HMPREF1078_RS03090 0.52 -3.5
738,884 - HMPREF1078_RS03090 0.52 -2.7
738,884 - HMPREF1078_RS03090 0.52 -1.8
738,884 - HMPREF1078_RS03090 0.52 -2.2
738,977 + HMPREF1078_RS03090 0.73 -4.5
739,007 + HMPREF1078_RS03090 0.79 -4.0
739,048 + HMPREF1078_RS03090 0.88 -3.7
739,048 + HMPREF1078_RS03090 0.88 -3.9
739,049 - HMPREF1078_RS03090 0.88 -2.4
739,073 + -4.8
739,074 - -1.9
739,074 - -1.7
739,074 - -4.2
739,074 - -4.5
739,088 + -2.4
739,088 + -0.4
739,089 - -0.6
739,089 - -2.7
739,097 - -4.5
739,120 + -3.9
739,121 - +0.0
739,121 - -0.3
739,190 - +0.2
739,225 - -4.2
739,246 + +1.0
739,296 + HMPREF1078_RS19720 0.26 +0.8
739,372 + HMPREF1078_RS19720 0.65 +1.6
739,373 - HMPREF1078_RS19720 0.66 -0.5
739,457 - +0.4
739,487 - -0.8
739,494 - HMPREF1078_RS03095 0.12 -0.0
739,779 - +0.4
739,834 - +0.5
739,860 + +0.5
739,907 - -0.9
739,908 + -0.7
739,914 + -1.5
739,921 + -1.2
739,972 + -1.1
739,973 - -1.1
740,017 - HMPREF1078_RS03100 0.20 +1.2
740,090 + HMPREF1078_RS03100 0.55 -0.2
740,091 - HMPREF1078_RS03100 0.56 +0.2

Or see this region's nucleotide sequence