Experiment: D-Mannose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS02155 and HMPREF1078_RS02160 are separated by 49 nucleotides HMPREF1078_RS02160 and HMPREF1078_RS02165 are separated by 35 nucleotides HMPREF1078_RS02165 and HMPREF1078_RS02170 are separated by 123 nucleotides HMPREF1078_RS02170 and HMPREF1078_RS02175 are separated by 75 nucleotides HMPREF1078_RS02175 and HMPREF1078_RS02180 are separated by 229 nucleotides
HMPREF1078_RS02155: HMPREF1078_RS02155 - hypothetical protein, at 537,409 to 537,579
_RS02155
HMPREF1078_RS02160: HMPREF1078_RS02160 - tRNA-Arg, at 537,629 to 537,702
_RS02160
HMPREF1078_RS02165: HMPREF1078_RS02165 - tRNA-Arg, at 537,738 to 537,814
_RS02165
HMPREF1078_RS02170: HMPREF1078_RS02170 - tRNA-Arg, at 537,938 to 538,014
_RS02170
HMPREF1078_RS02175: HMPREF1078_RS02175 - patatin-like phospholipase family protein, at 538,090 to 540,405
_RS02175
HMPREF1078_RS02180: HMPREF1078_RS02180 - molecular chaperone HtpG, at 540,635 to 542,686
_RS02180
Position (kb) 538
539
540
541 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 537.141 kb on - strand at 537.148 kb on + strand at 537.161 kb on - strand at 537.167 kb on + strand at 537.167 kb on + strand at 537.168 kb on - strand at 537.212 kb on - strand at 537.265 kb on + strand at 537.280 kb on - strand at 537.299 kb on + strand at 537.364 kb on + strand at 537.365 kb on - strand at 537.365 kb on - strand at 537.365 kb on - strand at 537.365 kb on - strand at 537.366 kb on + strand at 537.366 kb on + strand at 537.367 kb on - strand at 537.367 kb on - strand at 537.378 kb on - strand at 537.408 kb on + strand at 537.419 kb on - strand at 537.479 kb on + strand, within HMPREF1078_RS02155 at 537.479 kb on + strand, within HMPREF1078_RS02155 at 537.479 kb on + strand, within HMPREF1078_RS02155 at 537.500 kb on - strand, within HMPREF1078_RS02155 at 537.552 kb on + strand, within HMPREF1078_RS02155 at 537.553 kb on - strand, within HMPREF1078_RS02155 at 537.605 kb on + strand at 537.606 kb on - strand at 537.606 kb on - strand at 537.613 kb on - strand at 537.681 kb on + strand, within HMPREF1078_RS02160 at 537.694 kb on + strand, within HMPREF1078_RS02160 at 537.712 kb on - strand at 537.733 kb on + strand at 537.734 kb on - strand at 537.734 kb on - strand at 538.179 kb on - strand at 538.208 kb on - strand at 538.231 kb on - strand at 538.232 kb on + strand at 538.233 kb on - strand at 538.233 kb on - strand at 538.277 kb on + strand at 538.278 kb on - strand at 538.278 kb on - strand at 538.278 kb on - strand at 538.278 kb on - strand at 538.295 kb on - strand at 538.295 kb on - strand at 538.295 kb on - strand at 538.309 kb on + strand at 538.335 kb on - strand, within HMPREF1078_RS02175 at 538.335 kb on - strand, within HMPREF1078_RS02175 at 538.440 kb on + strand, within HMPREF1078_RS02175 at 538.487 kb on + strand, within HMPREF1078_RS02175 at 538.519 kb on + strand, within HMPREF1078_RS02175 at 538.565 kb on + strand, within HMPREF1078_RS02175 at 538.626 kb on + strand, within HMPREF1078_RS02175 at 538.628 kb on + strand, within HMPREF1078_RS02175 at 538.632 kb on + strand, within HMPREF1078_RS02175 at 538.649 kb on + strand, within HMPREF1078_RS02175 at 538.649 kb on + strand, within HMPREF1078_RS02175 at 538.667 kb on - strand, within HMPREF1078_RS02175 at 538.670 kb on + strand, within HMPREF1078_RS02175 at 538.671 kb on - strand, within HMPREF1078_RS02175 at 538.682 kb on - strand, within HMPREF1078_RS02175 at 538.716 kb on + strand, within HMPREF1078_RS02175 at 538.717 kb on - strand, within HMPREF1078_RS02175 at 538.717 kb on - strand, within HMPREF1078_RS02175 at 538.766 kb on + strand, within HMPREF1078_RS02175 at 538.766 kb on + strand, within HMPREF1078_RS02175 at 538.767 kb on - strand, within HMPREF1078_RS02175 at 538.767 kb on - strand, within HMPREF1078_RS02175 at 538.767 kb on - strand, within HMPREF1078_RS02175 at 538.774 kb on - strand, within HMPREF1078_RS02175 at 538.774 kb on - strand, within HMPREF1078_RS02175 at 538.821 kb on - strand, within HMPREF1078_RS02175 at 538.823 kb on + strand, within HMPREF1078_RS02175 at 538.937 kb on - strand, within HMPREF1078_RS02175 at 539.007 kb on - strand, within HMPREF1078_RS02175 at 539.007 kb on - strand, within HMPREF1078_RS02175 at 539.030 kb on + strand, within HMPREF1078_RS02175 at 539.034 kb on + strand, within HMPREF1078_RS02175 at 539.034 kb on + strand, within HMPREF1078_RS02175 at 539.090 kb on - strand, within HMPREF1078_RS02175 at 539.114 kb on + strand, within HMPREF1078_RS02175 at 539.153 kb on + strand, within HMPREF1078_RS02175 at 539.154 kb on - strand, within HMPREF1078_RS02175 at 539.244 kb on - strand, within HMPREF1078_RS02175 at 539.260 kb on + strand, within HMPREF1078_RS02175 at 539.279 kb on + strand, within HMPREF1078_RS02175 at 539.298 kb on - strand, within HMPREF1078_RS02175 at 539.364 kb on - strand, within HMPREF1078_RS02175 at 539.396 kb on + strand, within HMPREF1078_RS02175 at 539.397 kb on - strand, within HMPREF1078_RS02175 at 539.397 kb on - strand, within HMPREF1078_RS02175 at 539.397 kb on - strand, within HMPREF1078_RS02175 at 539.397 kb on - strand, within HMPREF1078_RS02175 at 539.397 kb on - strand, within HMPREF1078_RS02175 at 539.398 kb on + strand, within HMPREF1078_RS02175 at 539.399 kb on - strand, within HMPREF1078_RS02175 at 539.399 kb on - strand, within HMPREF1078_RS02175 at 539.399 kb on - strand, within HMPREF1078_RS02175 at 539.400 kb on + strand, within HMPREF1078_RS02175 at 539.400 kb on + strand, within HMPREF1078_RS02175 at 539.422 kb on + strand, within HMPREF1078_RS02175 at 539.422 kb on + strand, within HMPREF1078_RS02175 at 539.423 kb on - strand, within HMPREF1078_RS02175 at 539.436 kb on - strand, within HMPREF1078_RS02175 at 539.525 kb on + strand, within HMPREF1078_RS02175 at 539.525 kb on + strand, within HMPREF1078_RS02175 at 539.601 kb on + strand, within HMPREF1078_RS02175 at 539.601 kb on + strand, within HMPREF1078_RS02175 at 539.602 kb on - strand, within HMPREF1078_RS02175 at 539.624 kb on + strand, within HMPREF1078_RS02175 at 539.765 kb on + strand, within HMPREF1078_RS02175 at 539.766 kb on - strand, within HMPREF1078_RS02175 at 539.891 kb on + strand, within HMPREF1078_RS02175 at 539.892 kb on - strand, within HMPREF1078_RS02175 at 539.979 kb on + strand, within HMPREF1078_RS02175 at 540.044 kb on - strand, within HMPREF1078_RS02175 at 540.062 kb on - strand, within HMPREF1078_RS02175 at 540.108 kb on - strand, within HMPREF1078_RS02175 at 540.117 kb on - strand, within HMPREF1078_RS02175 at 540.147 kb on - strand, within HMPREF1078_RS02175 at 540.192 kb on + strand at 540.192 kb on + strand at 540.192 kb on + strand at 540.192 kb on + strand at 540.193 kb on - strand at 540.193 kb on - strand at 540.193 kb on - strand at 540.193 kb on - strand at 540.193 kb on - strand at 540.193 kb on - strand at 540.193 kb on - strand at 540.195 kb on - strand at 540.214 kb on - strand at 540.248 kb on + strand at 540.249 kb on - strand at 540.249 kb on - strand at 540.337 kb on + strand at 540.362 kb on - strand at 540.389 kb on - strand at 540.395 kb on - strand at 540.405 kb on + strand at 540.411 kb on + strand at 540.411 kb on + strand at 540.458 kb on + strand at 540.459 kb on - strand at 540.475 kb on + strand at 540.475 kb on + strand at 540.476 kb on - strand at 540.489 kb on + strand at 540.719 kb on + strand at 540.719 kb on + strand at 540.720 kb on - strand at 540.720 kb on - strand at 540.723 kb on - strand at 540.753 kb on + strand at 540.818 kb on - strand at 540.818 kb on - strand at 540.971 kb on - strand, within HMPREF1078_RS02180 at 541.005 kb on + strand, within HMPREF1078_RS02180 at 541.036 kb on + strand, within HMPREF1078_RS02180 at 541.036 kb on + strand, within HMPREF1078_RS02180 at 541.037 kb on - strand, within HMPREF1078_RS02180 at 541.037 kb on - strand, within HMPREF1078_RS02180 at 541.037 kb on - strand, within HMPREF1078_RS02180 at 541.037 kb on - strand, within HMPREF1078_RS02180 at 541.037 kb on - strand, within HMPREF1078_RS02180 at 541.075 kb on + strand, within HMPREF1078_RS02180 at 541.077 kb on + strand, within HMPREF1078_RS02180 at 541.077 kb on + strand, within HMPREF1078_RS02180 at 541.313 kb on + strand, within HMPREF1078_RS02180 at 541.316 kb on - strand, within HMPREF1078_RS02180 at 541.316 kb on - strand, within HMPREF1078_RS02180 at 541.356 kb on + strand, within HMPREF1078_RS02180 at 541.384 kb on - strand, within HMPREF1078_RS02180 at 541.384 kb on - strand, within HMPREF1078_RS02180 at 541.384 kb on - strand, within HMPREF1078_RS02180 at 541.390 kb on - strand, within HMPREF1078_RS02180
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mg/mL (C) remove 537,141 - -1.8 537,148 + +2.1 537,161 - +0.0 537,167 + -0.7 537,167 + +1.4 537,168 - +2.0 537,212 - +1.2 537,265 + -1.1 537,280 - +0.7 537,299 + -0.0 537,364 + -0.8 537,365 - -0.6 537,365 - -0.9 537,365 - -1.8 537,365 - -0.6 537,366 + -1.1 537,366 + -2.0 537,367 - -0.5 537,367 - +0.7 537,378 - +0.2 537,408 + -0.4 537,419 - +1.1 537,479 + HMPREF1078_RS02155 0.41 -0.3 537,479 + HMPREF1078_RS02155 0.41 +0.1 537,479 + HMPREF1078_RS02155 0.41 +0.6 537,500 - HMPREF1078_RS02155 0.53 -1.3 537,552 + HMPREF1078_RS02155 0.84 -0.0 537,553 - HMPREF1078_RS02155 0.84 -0.2 537,605 + +0.9 537,606 - +1.2 537,606 - -0.3 537,613 - -0.4 537,681 + HMPREF1078_RS02160 0.70 -1.6 537,694 + HMPREF1078_RS02160 0.88 -0.2 537,712 - -0.7 537,733 + +0.6 537,734 - -0.1 537,734 - -0.1 538,179 - -0.5 538,208 - -2.0 538,231 - -2.2 538,232 + -1.6 538,233 - -1.1 538,233 - +0.4 538,277 + -2.2 538,278 - -3.0 538,278 - -2.2 538,278 - -3.6 538,278 - -2.8 538,295 - +0.0 538,295 - -2.1 538,295 - -0.7 538,309 + -2.5 538,335 - HMPREF1078_RS02175 0.11 -1.7 538,335 - HMPREF1078_RS02175 0.11 -0.6 538,440 + HMPREF1078_RS02175 0.15 -0.0 538,487 + HMPREF1078_RS02175 0.17 -1.3 538,519 + HMPREF1078_RS02175 0.19 -2.0 538,565 + HMPREF1078_RS02175 0.21 +0.4 538,626 + HMPREF1078_RS02175 0.23 -3.2 538,628 + HMPREF1078_RS02175 0.23 -1.7 538,632 + HMPREF1078_RS02175 0.23 +4.4 538,649 + HMPREF1078_RS02175 0.24 -2.5 538,649 + HMPREF1078_RS02175 0.24 -1.3 538,667 - HMPREF1078_RS02175 0.25 -2.1 538,670 + HMPREF1078_RS02175 0.25 -2.1 538,671 - HMPREF1078_RS02175 0.25 -1.9 538,682 - HMPREF1078_RS02175 0.26 -1.9 538,716 + HMPREF1078_RS02175 0.27 +0.0 538,717 - HMPREF1078_RS02175 0.27 -2.7 538,717 - HMPREF1078_RS02175 0.27 -2.2 538,766 + HMPREF1078_RS02175 0.29 -2.6 538,766 + HMPREF1078_RS02175 0.29 -1.0 538,767 - HMPREF1078_RS02175 0.29 -2.5 538,767 - HMPREF1078_RS02175 0.29 -1.6 538,767 - HMPREF1078_RS02175 0.29 -2.5 538,774 - HMPREF1078_RS02175 0.30 -5.6 538,774 - HMPREF1078_RS02175 0.30 -0.2 538,821 - HMPREF1078_RS02175 0.32 -1.0 538,823 + HMPREF1078_RS02175 0.32 -2.1 538,937 - HMPREF1078_RS02175 0.37 -2.2 539,007 - HMPREF1078_RS02175 0.40 -1.4 539,007 - HMPREF1078_RS02175 0.40 -2.8 539,030 + HMPREF1078_RS02175 0.41 -1.8 539,034 + HMPREF1078_RS02175 0.41 -3.2 539,034 + HMPREF1078_RS02175 0.41 -0.1 539,090 - HMPREF1078_RS02175 0.43 -2.2 539,114 + HMPREF1078_RS02175 0.44 -1.1 539,153 + HMPREF1078_RS02175 0.46 -0.8 539,154 - HMPREF1078_RS02175 0.46 -1.2 539,244 - HMPREF1078_RS02175 0.50 -0.3 539,260 + HMPREF1078_RS02175 0.51 +0.2 539,279 + HMPREF1078_RS02175 0.51 -1.1 539,298 - HMPREF1078_RS02175 0.52 -1.2 539,364 - HMPREF1078_RS02175 0.55 -2.0 539,396 + HMPREF1078_RS02175 0.56 -1.7 539,397 - HMPREF1078_RS02175 0.56 -0.6 539,397 - HMPREF1078_RS02175 0.56 -1.1 539,397 - HMPREF1078_RS02175 0.56 -2.9 539,397 - HMPREF1078_RS02175 0.56 -1.0 539,397 - HMPREF1078_RS02175 0.56 +0.4 539,398 + HMPREF1078_RS02175 0.56 -0.8 539,399 - HMPREF1078_RS02175 0.57 -1.3 539,399 - HMPREF1078_RS02175 0.57 -0.1 539,399 - HMPREF1078_RS02175 0.57 -1.2 539,400 + HMPREF1078_RS02175 0.57 -1.9 539,400 + HMPREF1078_RS02175 0.57 -0.6 539,422 + HMPREF1078_RS02175 0.58 +2.4 539,422 + HMPREF1078_RS02175 0.58 -1.6 539,423 - HMPREF1078_RS02175 0.58 -2.4 539,436 - HMPREF1078_RS02175 0.58 -2.5 539,525 + HMPREF1078_RS02175 0.62 -1.5 539,525 + HMPREF1078_RS02175 0.62 -0.6 539,601 + HMPREF1078_RS02175 0.65 -2.2 539,601 + HMPREF1078_RS02175 0.65 -1.5 539,602 - HMPREF1078_RS02175 0.65 +0.8 539,624 + HMPREF1078_RS02175 0.66 -2.0 539,765 + HMPREF1078_RS02175 0.72 +0.4 539,766 - HMPREF1078_RS02175 0.72 -0.4 539,891 + HMPREF1078_RS02175 0.78 -0.6 539,892 - HMPREF1078_RS02175 0.78 -0.8 539,979 + HMPREF1078_RS02175 0.82 -1.9 540,044 - HMPREF1078_RS02175 0.84 -1.0 540,062 - HMPREF1078_RS02175 0.85 +0.0 540,108 - HMPREF1078_RS02175 0.87 +1.4 540,117 - HMPREF1078_RS02175 0.88 -1.0 540,147 - HMPREF1078_RS02175 0.89 -1.1 540,192 + -1.8 540,192 + +0.0 540,192 + -1.5 540,192 + +0.6 540,193 - -1.6 540,193 - +0.4 540,193 - -1.3 540,193 - -0.6 540,193 - -1.6 540,193 - -1.8 540,193 - -1.0 540,195 - -2.7 540,214 - -4.1 540,248 + -0.2 540,249 - +0.0 540,249 - -2.9 540,337 + -1.0 540,362 - -1.4 540,389 - -0.3 540,395 - -2.2 540,405 + -3.0 540,411 + -1.4 540,411 + +0.8 540,458 + -1.7 540,459 - -0.8 540,475 + +0.1 540,475 + +0.5 540,476 - -1.2 540,489 + -0.7 540,719 + -0.2 540,719 + -0.1 540,720 - +0.9 540,720 - -0.8 540,723 - -0.7 540,753 + +1.2 540,818 - -0.4 540,818 - -0.6 540,971 - HMPREF1078_RS02180 0.16 -0.8 541,005 + HMPREF1078_RS02180 0.18 +1.8 541,036 + HMPREF1078_RS02180 0.20 -0.0 541,036 + HMPREF1078_RS02180 0.20 -0.4 541,037 - HMPREF1078_RS02180 0.20 -0.3 541,037 - HMPREF1078_RS02180 0.20 -0.1 541,037 - HMPREF1078_RS02180 0.20 +1.4 541,037 - HMPREF1078_RS02180 0.20 +1.4 541,037 - HMPREF1078_RS02180 0.20 -0.6 541,075 + HMPREF1078_RS02180 0.21 +0.3 541,077 + HMPREF1078_RS02180 0.22 -0.0 541,077 + HMPREF1078_RS02180 0.22 -1.7 541,313 + HMPREF1078_RS02180 0.33 -0.4 541,316 - HMPREF1078_RS02180 0.33 -0.0 541,316 - HMPREF1078_RS02180 0.33 +0.7 541,356 + HMPREF1078_RS02180 0.35 +1.4 541,384 - HMPREF1078_RS02180 0.37 +0.9 541,384 - HMPREF1078_RS02180 0.37 -2.4 541,384 - HMPREF1078_RS02180 0.37 -0.4 541,390 - HMPREF1078_RS02180 0.37 -0.9
Or see this region's nucleotide sequence