Experiment: D-Mannose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS01860 and HMPREF1078_RS01865 are separated by 4 nucleotides HMPREF1078_RS01865 and HMPREF1078_RS01870 are separated by 75 nucleotides HMPREF1078_RS01870 and HMPREF1078_RS01875 are separated by 115 nucleotides
HMPREF1078_RS01860: HMPREF1078_RS01860 - BatD family protein, at 462,308 to 464,122
_RS01860
HMPREF1078_RS01865: HMPREF1078_RS01865 - tetratricopeptide repeat protein, at 464,127 to 464,894
_RS01865
HMPREF1078_RS01870: HMPREF1078_RS01870 - phosphatase PAP2 family protein, at 464,970 to 465,662
_RS01870
HMPREF1078_RS01875: HMPREF1078_RS01875 - hypothetical protein, at 465,778 to 466,053
_RS01875
Position (kb) 464
465 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 463.137 kb on + strand, within HMPREF1078_RS01860 at 463.685 kb on + strand, within HMPREF1078_RS01860 at 463.964 kb on + strand at 464.062 kb on + strand at 464.062 kb on + strand at 464.067 kb on + strand at 464.067 kb on + strand at 464.069 kb on + strand at 464.069 kb on + strand at 464.095 kb on + strand at 464.138 kb on + strand at 464.140 kb on + strand at 464.140 kb on + strand at 464.144 kb on + strand at 464.158 kb on + strand at 464.183 kb on + strand at 464.313 kb on + strand, within HMPREF1078_RS01865 at 464.316 kb on + strand, within HMPREF1078_RS01865 at 464.316 kb on + strand, within HMPREF1078_RS01865 at 464.316 kb on + strand, within HMPREF1078_RS01865 at 464.316 kb on + strand, within HMPREF1078_RS01865 at 464.316 kb on + strand, within HMPREF1078_RS01865 at 464.340 kb on - strand, within HMPREF1078_RS01865 at 464.625 kb on + strand, within HMPREF1078_RS01865 at 464.638 kb on + strand, within HMPREF1078_RS01865 at 464.638 kb on + strand, within HMPREF1078_RS01865 at 464.666 kb on + strand, within HMPREF1078_RS01865 at 464.666 kb on + strand, within HMPREF1078_RS01865 at 464.667 kb on - strand, within HMPREF1078_RS01865 at 464.858 kb on - strand at 464.893 kb on - strand at 464.906 kb on + strand at 464.914 kb on - strand at 464.921 kb on - strand at 464.934 kb on - strand at 464.986 kb on + strand at 464.986 kb on + strand at 464.987 kb on - strand at 465.117 kb on + strand, within HMPREF1078_RS01870 at 465.207 kb on - strand, within HMPREF1078_RS01870 at 465.207 kb on - strand, within HMPREF1078_RS01870 at 465.294 kb on + strand, within HMPREF1078_RS01870 at 465.344 kb on + strand, within HMPREF1078_RS01870 at 465.344 kb on + strand, within HMPREF1078_RS01870 at 465.344 kb on + strand, within HMPREF1078_RS01870 at 465.366 kb on - strand, within HMPREF1078_RS01870 at 465.404 kb on + strand, within HMPREF1078_RS01870 at 465.411 kb on + strand, within HMPREF1078_RS01870 at 465.412 kb on - strand, within HMPREF1078_RS01870 at 465.412 kb on - strand, within HMPREF1078_RS01870 at 465.414 kb on - strand, within HMPREF1078_RS01870 at 465.423 kb on + strand, within HMPREF1078_RS01870 at 465.504 kb on + strand, within HMPREF1078_RS01870 at 465.575 kb on + strand, within HMPREF1078_RS01870 at 465.598 kb on + strand at 465.598 kb on + strand at 465.599 kb on - strand at 465.599 kb on - strand at 465.600 kb on + strand at 465.617 kb on + strand at 465.618 kb on - strand at 465.618 kb on - strand at 465.618 kb on - strand at 465.673 kb on - strand at 465.683 kb on + strand at 465.697 kb on - strand at 465.718 kb on - strand at 465.724 kb on + strand at 465.729 kb on + strand at 465.757 kb on - strand at 465.798 kb on + strand at 465.798 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mg/mL (C) remove 463,137 + HMPREF1078_RS01860 0.46 +0.7 463,685 + HMPREF1078_RS01860 0.76 +1.3 463,964 + +0.7 464,062 + -2.4 464,062 + -3.1 464,067 + +0.0 464,067 + -2.3 464,069 + -3.2 464,069 + -1.0 464,095 + -0.9 464,138 + -1.8 464,140 + -0.7 464,140 + -2.8 464,144 + -1.8 464,158 + -0.8 464,183 + -0.7 464,313 + HMPREF1078_RS01865 0.24 +0.3 464,316 + HMPREF1078_RS01865 0.25 -0.7 464,316 + HMPREF1078_RS01865 0.25 -2.3 464,316 + HMPREF1078_RS01865 0.25 -1.5 464,316 + HMPREF1078_RS01865 0.25 -2.1 464,316 + HMPREF1078_RS01865 0.25 -3.8 464,340 - HMPREF1078_RS01865 0.28 +2.3 464,625 + HMPREF1078_RS01865 0.65 -1.7 464,638 + HMPREF1078_RS01865 0.67 -2.2 464,638 + HMPREF1078_RS01865 0.67 -1.8 464,666 + HMPREF1078_RS01865 0.70 -2.9 464,666 + HMPREF1078_RS01865 0.70 -2.8 464,667 - HMPREF1078_RS01865 0.70 +2.3 464,858 - -1.3 464,893 - -0.8 464,906 + +0.2 464,914 - -0.4 464,921 - +1.0 464,934 - -0.9 464,986 + +1.0 464,986 + -0.0 464,987 - -0.2 465,117 + HMPREF1078_RS01870 0.21 -0.7 465,207 - HMPREF1078_RS01870 0.34 -1.2 465,207 - HMPREF1078_RS01870 0.34 -0.5 465,294 + HMPREF1078_RS01870 0.47 +1.0 465,344 + HMPREF1078_RS01870 0.54 +1.1 465,344 + HMPREF1078_RS01870 0.54 -0.3 465,344 + HMPREF1078_RS01870 0.54 +1.1 465,366 - HMPREF1078_RS01870 0.57 +0.0 465,404 + HMPREF1078_RS01870 0.63 -2.5 465,411 + HMPREF1078_RS01870 0.64 -0.6 465,412 - HMPREF1078_RS01870 0.64 -0.6 465,412 - HMPREF1078_RS01870 0.64 -1.0 465,414 - HMPREF1078_RS01870 0.64 +0.0 465,423 + HMPREF1078_RS01870 0.65 +0.5 465,504 + HMPREF1078_RS01870 0.77 +0.7 465,575 + HMPREF1078_RS01870 0.87 +0.0 465,598 + -1.2 465,598 + -0.7 465,599 - +5.1 465,599 - +0.6 465,600 + +0.7 465,617 + +1.5 465,618 - -1.0 465,618 - -0.5 465,618 - -0.5 465,673 - +1.2 465,683 + -0.7 465,697 - -0.5 465,718 - -0.2 465,724 + -0.4 465,729 + -0.0 465,757 - +0.1 465,798 + +0.4 465,798 + +0.2
Or see this region's nucleotide sequence