Experiment: D-Mannose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS01130 and HMPREF1078_RS01135 overlap by 26 nucleotides HMPREF1078_RS01135 and HMPREF1078_RS01140 are separated by 385 nucleotides
HMPREF1078_RS01130: HMPREF1078_RS01130 - aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme, at 283,444 to 284,631
_RS01130
HMPREF1078_RS01135: HMPREF1078_RS01135 - prephenate dehydratase, at 284,606 to 285,451
_RS01135
HMPREF1078_RS01140: HMPREF1078_RS01140 - hydrogen peroxide-inducible genes activator, at 285,837 to 286,763
_RS01140
Position (kb) 284
285
286 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 283.647 kb on + strand, within HMPREF1078_RS01130 at 283.647 kb on + strand, within HMPREF1078_RS01130 at 283.647 kb on + strand, within HMPREF1078_RS01130 at 283.648 kb on - strand, within HMPREF1078_RS01130 at 283.651 kb on + strand, within HMPREF1078_RS01130 at 283.651 kb on + strand, within HMPREF1078_RS01130 at 283.652 kb on - strand, within HMPREF1078_RS01130 at 283.721 kb on + strand, within HMPREF1078_RS01130 at 283.724 kb on - strand, within HMPREF1078_RS01130 at 283.734 kb on + strand, within HMPREF1078_RS01130 at 283.734 kb on + strand, within HMPREF1078_RS01130 at 283.735 kb on - strand, within HMPREF1078_RS01130 at 283.743 kb on - strand, within HMPREF1078_RS01130 at 283.743 kb on - strand, within HMPREF1078_RS01130 at 283.822 kb on + strand, within HMPREF1078_RS01130 at 283.841 kb on - strand, within HMPREF1078_RS01130 at 283.872 kb on + strand, within HMPREF1078_RS01130 at 283.887 kb on + strand, within HMPREF1078_RS01130 at 283.888 kb on - strand, within HMPREF1078_RS01130 at 283.900 kb on - strand, within HMPREF1078_RS01130 at 283.918 kb on + strand, within HMPREF1078_RS01130 at 283.918 kb on + strand, within HMPREF1078_RS01130 at 283.920 kb on + strand, within HMPREF1078_RS01130 at 283.983 kb on + strand, within HMPREF1078_RS01130 at 283.984 kb on - strand, within HMPREF1078_RS01130 at 283.984 kb on - strand, within HMPREF1078_RS01130 at 284.064 kb on + strand, within HMPREF1078_RS01130 at 284.080 kb on - strand, within HMPREF1078_RS01130 at 284.159 kb on - strand, within HMPREF1078_RS01130 at 284.217 kb on + strand, within HMPREF1078_RS01130 at 284.217 kb on + strand, within HMPREF1078_RS01130 at 284.217 kb on + strand, within HMPREF1078_RS01130 at 284.218 kb on - strand, within HMPREF1078_RS01130 at 284.219 kb on + strand, within HMPREF1078_RS01130 at 284.281 kb on + strand, within HMPREF1078_RS01130 at 284.281 kb on + strand, within HMPREF1078_RS01130 at 284.282 kb on - strand, within HMPREF1078_RS01130 at 284.351 kb on + strand, within HMPREF1078_RS01130 at 284.364 kb on - strand, within HMPREF1078_RS01130 at 284.397 kb on + strand, within HMPREF1078_RS01130 at 284.397 kb on + strand, within HMPREF1078_RS01130 at 284.397 kb on + strand, within HMPREF1078_RS01130 at 284.398 kb on - strand, within HMPREF1078_RS01130 at 284.398 kb on - strand, within HMPREF1078_RS01130 at 284.401 kb on + strand, within HMPREF1078_RS01130 at 284.401 kb on + strand, within HMPREF1078_RS01130 at 284.401 kb on + strand, within HMPREF1078_RS01130 at 284.401 kb on + strand, within HMPREF1078_RS01130 at 284.401 kb on + strand, within HMPREF1078_RS01130 at 284.401 kb on + strand, within HMPREF1078_RS01130 at 284.401 kb on + strand, within HMPREF1078_RS01130 at 284.402 kb on - strand, within HMPREF1078_RS01130 at 284.402 kb on - strand, within HMPREF1078_RS01130 at 284.402 kb on - strand, within HMPREF1078_RS01130 at 284.402 kb on - strand, within HMPREF1078_RS01130 at 284.405 kb on + strand, within HMPREF1078_RS01130 at 284.405 kb on + strand, within HMPREF1078_RS01130 at 284.406 kb on - strand, within HMPREF1078_RS01130 at 284.406 kb on - strand, within HMPREF1078_RS01130 at 284.433 kb on + strand, within HMPREF1078_RS01130 at 284.433 kb on + strand, within HMPREF1078_RS01130 at 284.564 kb on + strand at 284.567 kb on + strand at 284.567 kb on + strand at 284.567 kb on + strand at 284.568 kb on - strand at 284.568 kb on - strand at 284.581 kb on - strand at 284.584 kb on + strand at 284.602 kb on - strand at 284.608 kb on - strand at 284.609 kb on + strand at 284.609 kb on + strand at 284.610 kb on - strand at 284.610 kb on - strand at 284.610 kb on - strand at 284.610 kb on - strand at 284.610 kb on - strand at 284.631 kb on + strand at 284.631 kb on + strand at 284.632 kb on - strand at 284.632 kb on - strand at 284.640 kb on - strand at 284.643 kb on - strand at 284.671 kb on + strand at 284.707 kb on + strand, within HMPREF1078_RS01135 at 284.708 kb on - strand, within HMPREF1078_RS01135 at 284.725 kb on - strand, within HMPREF1078_RS01135 at 284.733 kb on + strand, within HMPREF1078_RS01135 at 284.734 kb on - strand, within HMPREF1078_RS01135 at 284.768 kb on + strand, within HMPREF1078_RS01135 at 284.790 kb on + strand, within HMPREF1078_RS01135 at 284.979 kb on + strand, within HMPREF1078_RS01135 at 284.979 kb on + strand, within HMPREF1078_RS01135 at 284.980 kb on - strand, within HMPREF1078_RS01135 at 285.062 kb on - strand, within HMPREF1078_RS01135 at 285.089 kb on - strand, within HMPREF1078_RS01135 at 285.093 kb on - strand, within HMPREF1078_RS01135 at 285.113 kb on - strand, within HMPREF1078_RS01135 at 285.211 kb on - strand, within HMPREF1078_RS01135 at 285.211 kb on - strand, within HMPREF1078_RS01135 at 285.220 kb on + strand, within HMPREF1078_RS01135 at 285.335 kb on - strand, within HMPREF1078_RS01135 at 285.362 kb on - strand, within HMPREF1078_RS01135 at 285.362 kb on - strand, within HMPREF1078_RS01135 at 285.401 kb on + strand at 285.437 kb on + strand at 285.437 kb on + strand at 285.438 kb on - strand at 285.464 kb on + strand at 285.467 kb on + strand at 285.467 kb on + strand at 285.468 kb on - strand at 285.492 kb on - strand at 285.527 kb on + strand at 285.528 kb on - strand at 285.535 kb on + strand at 285.536 kb on - strand at 285.541 kb on + strand at 285.542 kb on - strand at 285.542 kb on - strand at 285.542 kb on - strand at 285.542 kb on - strand at 285.542 kb on - strand at 285.542 kb on - strand at 285.542 kb on - strand at 285.542 kb on - strand at 285.543 kb on + strand at 285.545 kb on + strand at 285.545 kb on + strand at 285.545 kb on + strand at 285.545 kb on + strand at 285.545 kb on + strand at 285.546 kb on - strand at 285.546 kb on - strand at 285.546 kb on - strand at 285.546 kb on - strand at 285.546 kb on - strand at 285.546 kb on - strand at 285.546 kb on - strand at 285.546 kb on - strand at 285.546 kb on - strand at 285.546 kb on - strand at 285.567 kb on - strand at 285.567 kb on - strand at 285.570 kb on + strand at 285.570 kb on + strand at 285.571 kb on - strand at 285.571 kb on - strand at 285.571 kb on - strand at 285.571 kb on - strand at 285.571 kb on - strand at 285.571 kb on - strand at 285.572 kb on - strand at 285.595 kb on - strand at 285.614 kb on + strand at 285.615 kb on - strand at 285.617 kb on + strand at 285.618 kb on - strand at 285.621 kb on + strand at 285.622 kb on - strand at 285.622 kb on - strand at 285.622 kb on - strand at 285.622 kb on - strand at 285.622 kb on - strand at 285.627 kb on + strand at 285.818 kb on + strand at 285.819 kb on - strand at 286.025 kb on - strand, within HMPREF1078_RS01140 at 286.025 kb on - strand, within HMPREF1078_RS01140 at 286.025 kb on - strand, within HMPREF1078_RS01140 at 286.073 kb on + strand, within HMPREF1078_RS01140 at 286.074 kb on - strand, within HMPREF1078_RS01140 at 286.258 kb on - strand, within HMPREF1078_RS01140 at 286.261 kb on + strand, within HMPREF1078_RS01140 at 286.267 kb on + strand, within HMPREF1078_RS01140 at 286.268 kb on - strand, within HMPREF1078_RS01140 at 286.279 kb on + strand, within HMPREF1078_RS01140 at 286.282 kb on + strand, within HMPREF1078_RS01140 at 286.283 kb on - strand, within HMPREF1078_RS01140 at 286.283 kb on - strand, within HMPREF1078_RS01140 at 286.284 kb on + strand, within HMPREF1078_RS01140 at 286.285 kb on - strand, within HMPREF1078_RS01140 at 286.285 kb on - strand, within HMPREF1078_RS01140 at 286.400 kb on + strand, within HMPREF1078_RS01140
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mg/mL (C) remove 283,647 + HMPREF1078_RS01130 0.17 -2.9 283,647 + HMPREF1078_RS01130 0.17 -1.6 283,647 + HMPREF1078_RS01130 0.17 -3.4 283,648 - HMPREF1078_RS01130 0.17 -2.2 283,651 + HMPREF1078_RS01130 0.17 -4.0 283,651 + HMPREF1078_RS01130 0.17 -5.0 283,652 - HMPREF1078_RS01130 0.18 -3.1 283,721 + HMPREF1078_RS01130 0.23 -2.8 283,724 - HMPREF1078_RS01130 0.24 -4.0 283,734 + HMPREF1078_RS01130 0.24 -1.0 283,734 + HMPREF1078_RS01130 0.24 -4.7 283,735 - HMPREF1078_RS01130 0.24 -1.7 283,743 - HMPREF1078_RS01130 0.25 -2.2 283,743 - HMPREF1078_RS01130 0.25 -2.7 283,822 + HMPREF1078_RS01130 0.32 -3.4 283,841 - HMPREF1078_RS01130 0.33 -3.8 283,872 + HMPREF1078_RS01130 0.36 -2.4 283,887 + HMPREF1078_RS01130 0.37 -1.3 283,888 - HMPREF1078_RS01130 0.37 -1.5 283,900 - HMPREF1078_RS01130 0.38 -2.6 283,918 + HMPREF1078_RS01130 0.40 -3.9 283,918 + HMPREF1078_RS01130 0.40 -4.3 283,920 + HMPREF1078_RS01130 0.40 -3.7 283,983 + HMPREF1078_RS01130 0.45 -2.9 283,984 - HMPREF1078_RS01130 0.45 -3.4 283,984 - HMPREF1078_RS01130 0.45 -2.9 284,064 + HMPREF1078_RS01130 0.52 -0.5 284,080 - HMPREF1078_RS01130 0.54 -3.2 284,159 - HMPREF1078_RS01130 0.60 -1.7 284,217 + HMPREF1078_RS01130 0.65 -1.1 284,217 + HMPREF1078_RS01130 0.65 -3.8 284,217 + HMPREF1078_RS01130 0.65 -2.3 284,218 - HMPREF1078_RS01130 0.65 -5.0 284,219 + HMPREF1078_RS01130 0.65 -3.6 284,281 + HMPREF1078_RS01130 0.70 -5.1 284,281 + HMPREF1078_RS01130 0.70 -0.0 284,282 - HMPREF1078_RS01130 0.71 -3.1 284,351 + HMPREF1078_RS01130 0.76 -3.4 284,364 - HMPREF1078_RS01130 0.77 -2.5 284,397 + HMPREF1078_RS01130 0.80 -4.0 284,397 + HMPREF1078_RS01130 0.80 -3.2 284,397 + HMPREF1078_RS01130 0.80 -2.8 284,398 - HMPREF1078_RS01130 0.80 -3.7 284,398 - HMPREF1078_RS01130 0.80 -4.0 284,401 + HMPREF1078_RS01130 0.81 -2.7 284,401 + HMPREF1078_RS01130 0.81 -1.3 284,401 + HMPREF1078_RS01130 0.81 -0.3 284,401 + HMPREF1078_RS01130 0.81 -2.6 284,401 + HMPREF1078_RS01130 0.81 -2.8 284,401 + HMPREF1078_RS01130 0.81 -2.4 284,401 + HMPREF1078_RS01130 0.81 -2.1 284,402 - HMPREF1078_RS01130 0.81 -3.6 284,402 - HMPREF1078_RS01130 0.81 -4.6 284,402 - HMPREF1078_RS01130 0.81 -4.5 284,402 - HMPREF1078_RS01130 0.81 -2.6 284,405 + HMPREF1078_RS01130 0.81 -2.4 284,405 + HMPREF1078_RS01130 0.81 -3.3 284,406 - HMPREF1078_RS01130 0.81 -4.5 284,406 - HMPREF1078_RS01130 0.81 -3.5 284,433 + HMPREF1078_RS01130 0.83 -5.6 284,433 + HMPREF1078_RS01130 0.83 -3.6 284,564 + -1.6 284,567 + -4.9 284,567 + -4.9 284,567 + -2.6 284,568 - -2.9 284,568 - -4.4 284,581 - -2.8 284,584 + -1.8 284,602 - -1.9 284,608 - -2.1 284,609 + -3.4 284,609 + -4.7 284,610 - -4.9 284,610 - -3.3 284,610 - -3.7 284,610 - -2.9 284,610 - -3.9 284,631 + -3.7 284,631 + -2.3 284,632 - -4.9 284,632 - -3.7 284,640 - -2.4 284,643 - -2.1 284,671 + -0.3 284,707 + HMPREF1078_RS01135 0.12 -3.1 284,708 - HMPREF1078_RS01135 0.12 -2.5 284,725 - HMPREF1078_RS01135 0.14 -2.8 284,733 + HMPREF1078_RS01135 0.15 -1.1 284,734 - HMPREF1078_RS01135 0.15 +0.3 284,768 + HMPREF1078_RS01135 0.19 -1.4 284,790 + HMPREF1078_RS01135 0.22 -2.4 284,979 + HMPREF1078_RS01135 0.44 -1.0 284,979 + HMPREF1078_RS01135 0.44 -4.1 284,980 - HMPREF1078_RS01135 0.44 -2.1 285,062 - HMPREF1078_RS01135 0.54 -1.7 285,089 - HMPREF1078_RS01135 0.57 -5.4 285,093 - HMPREF1078_RS01135 0.58 -4.0 285,113 - HMPREF1078_RS01135 0.60 -5.7 285,211 - HMPREF1078_RS01135 0.72 -2.7 285,211 - HMPREF1078_RS01135 0.72 -4.3 285,220 + HMPREF1078_RS01135 0.73 -2.9 285,335 - HMPREF1078_RS01135 0.86 -3.7 285,362 - HMPREF1078_RS01135 0.89 -1.6 285,362 - HMPREF1078_RS01135 0.89 -3.9 285,401 + -0.6 285,437 + -2.1 285,437 + -2.7 285,438 - -3.6 285,464 + -2.8 285,467 + -2.3 285,467 + -2.9 285,468 - -1.1 285,492 - -0.5 285,527 + -2.1 285,528 - -0.4 285,535 + -2.6 285,536 - +0.6 285,541 + -0.5 285,542 - +0.7 285,542 - -0.0 285,542 - -0.2 285,542 - -0.6 285,542 - -0.4 285,542 - +0.2 285,542 - -2.1 285,542 - -0.0 285,543 + -0.7 285,545 + -5.7 285,545 + -0.7 285,545 + -4.0 285,545 + -2.9 285,545 + -3.8 285,546 - -2.6 285,546 - -2.2 285,546 - -0.2 285,546 - -1.3 285,546 - -1.1 285,546 - +0.6 285,546 - +0.7 285,546 - -3.3 285,546 - -0.7 285,546 - -0.4 285,567 - -2.3 285,567 - -4.7 285,570 + -2.1 285,570 + -2.6 285,571 - -1.8 285,571 - -0.4 285,571 - -0.8 285,571 - -2.4 285,571 - +2.3 285,571 - -0.5 285,572 - -3.8 285,595 - -1.1 285,614 + -3.7 285,615 - +0.3 285,617 + -2.5 285,618 - -0.3 285,621 + -3.1 285,622 - +0.4 285,622 - -0.6 285,622 - -0.8 285,622 - -0.5 285,622 - +1.1 285,627 + -2.1 285,818 + +0.5 285,819 - +0.1 286,025 - HMPREF1078_RS01140 0.20 -0.2 286,025 - HMPREF1078_RS01140 0.20 -0.4 286,025 - HMPREF1078_RS01140 0.20 +0.3 286,073 + HMPREF1078_RS01140 0.25 -0.7 286,074 - HMPREF1078_RS01140 0.26 -0.7 286,258 - HMPREF1078_RS01140 0.45 -1.4 286,261 + HMPREF1078_RS01140 0.46 -0.3 286,267 + HMPREF1078_RS01140 0.46 +1.4 286,268 - HMPREF1078_RS01140 0.46 -0.7 286,279 + HMPREF1078_RS01140 0.48 -3.2 286,282 + HMPREF1078_RS01140 0.48 +1.2 286,283 - HMPREF1078_RS01140 0.48 -0.0 286,283 - HMPREF1078_RS01140 0.48 +0.4 286,284 + HMPREF1078_RS01140 0.48 +0.6 286,285 - HMPREF1078_RS01140 0.48 -0.2 286,285 - HMPREF1078_RS01140 0.48 +0.9 286,400 + HMPREF1078_RS01140 0.61 -0.0
Or see this region's nucleotide sequence