Experiment: D-Mannose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS00915 and HMPREF1078_RS00925 are separated by 481 nucleotides HMPREF1078_RS00925 and HMPREF1078_RS00930 are separated by 10 nucleotides
HMPREF1078_RS00915: HMPREF1078_RS00915 - GH92 family glycosyl hydrolase, at 224,272 to 226,572
_RS00915
HMPREF1078_RS00925: HMPREF1078_RS00925 - UpxY family transcription antiterminator, at 227,054 to 227,566
_RS00925
HMPREF1078_RS00930: HMPREF1078_RS00930 - cobyric acid synthase, at 227,577 to 229,100
_RS00930
Position (kb) 227
228 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 226.142 kb on - strand, within HMPREF1078_RS00915 at 226.142 kb on - strand, within HMPREF1078_RS00915 at 226.267 kb on - strand, within HMPREF1078_RS00915 at 226.309 kb on + strand, within HMPREF1078_RS00915 at 226.402 kb on - strand at 226.404 kb on + strand at 226.404 kb on + strand at 226.405 kb on - strand at 226.405 kb on - strand at 226.408 kb on + strand at 226.408 kb on + strand at 226.408 kb on + strand at 226.409 kb on - strand at 226.409 kb on - strand at 226.464 kb on + strand at 226.518 kb on + strand at 226.518 kb on + strand at 226.570 kb on + strand at 226.595 kb on + strand at 226.596 kb on - strand at 226.638 kb on + strand at 226.649 kb on + strand at 226.649 kb on + strand at 226.653 kb on + strand at 226.653 kb on + strand at 226.653 kb on + strand at 226.654 kb on - strand at 226.654 kb on - strand at 226.654 kb on - strand at 226.654 kb on - strand at 226.654 kb on - strand at 226.655 kb on + strand at 226.656 kb on - strand at 226.668 kb on + strand at 226.669 kb on - strand at 226.678 kb on + strand at 226.678 kb on + strand at 226.678 kb on + strand at 226.679 kb on - strand at 226.688 kb on - strand at 226.733 kb on - strand at 226.765 kb on + strand at 226.766 kb on - strand at 226.812 kb on + strand at 226.813 kb on - strand at 226.848 kb on - strand at 226.849 kb on + strand at 226.850 kb on - strand at 226.850 kb on - strand at 226.852 kb on - strand at 226.863 kb on + strand at 226.863 kb on + strand at 226.863 kb on + strand at 226.864 kb on - strand at 226.864 kb on - strand at 226.864 kb on - strand at 226.864 kb on - strand at 226.867 kb on + strand at 226.867 kb on + strand at 226.867 kb on + strand at 226.867 kb on + strand at 226.867 kb on + strand at 226.867 kb on + strand at 226.867 kb on + strand at 226.867 kb on + strand at 226.867 kb on + strand at 226.868 kb on - strand at 226.868 kb on - strand at 226.868 kb on - strand at 226.868 kb on - strand at 226.868 kb on - strand at 226.868 kb on - strand at 226.868 kb on - strand at 226.868 kb on - strand at 226.893 kb on + strand at 226.893 kb on + strand at 226.893 kb on + strand at 226.916 kb on + strand at 226.918 kb on + strand at 226.918 kb on + strand at 226.929 kb on - strand at 226.936 kb on + strand at 226.937 kb on - strand at 226.940 kb on + strand at 226.941 kb on + strand at 226.941 kb on - strand at 226.947 kb on - strand at 226.992 kb on + strand at 226.992 kb on + strand at 227.001 kb on - strand at 227.008 kb on - strand at 227.024 kb on - strand at 227.038 kb on + strand at 227.038 kb on + strand at 227.039 kb on - strand at 227.039 kb on - strand at 227.048 kb on + strand at 227.048 kb on + strand at 227.048 kb on + strand at 227.048 kb on + strand at 227.049 kb on - strand at 227.049 kb on - strand at 227.099 kb on + strand at 227.108 kb on + strand, within HMPREF1078_RS00925 at 227.108 kb on + strand, within HMPREF1078_RS00925 at 227.108 kb on + strand, within HMPREF1078_RS00925 at 227.108 kb on + strand, within HMPREF1078_RS00925 at 227.109 kb on - strand, within HMPREF1078_RS00925 at 227.109 kb on - strand, within HMPREF1078_RS00925 at 227.109 kb on - strand, within HMPREF1078_RS00925 at 227.235 kb on + strand, within HMPREF1078_RS00925 at 227.235 kb on + strand, within HMPREF1078_RS00925 at 227.236 kb on - strand, within HMPREF1078_RS00925 at 227.236 kb on - strand, within HMPREF1078_RS00925 at 227.239 kb on + strand, within HMPREF1078_RS00925 at 227.239 kb on + strand, within HMPREF1078_RS00925 at 227.240 kb on - strand, within HMPREF1078_RS00925 at 227.240 kb on - strand, within HMPREF1078_RS00925 at 227.246 kb on + strand, within HMPREF1078_RS00925 at 227.246 kb on + strand, within HMPREF1078_RS00925 at 227.246 kb on + strand, within HMPREF1078_RS00925 at 227.247 kb on - strand, within HMPREF1078_RS00925 at 227.256 kb on + strand, within HMPREF1078_RS00925 at 227.263 kb on + strand, within HMPREF1078_RS00925 at 227.264 kb on - strand, within HMPREF1078_RS00925 at 227.297 kb on + strand, within HMPREF1078_RS00925 at 227.297 kb on + strand, within HMPREF1078_RS00925 at 227.297 kb on + strand, within HMPREF1078_RS00925 at 227.297 kb on + strand, within HMPREF1078_RS00925 at 227.321 kb on + strand, within HMPREF1078_RS00925 at 227.321 kb on + strand, within HMPREF1078_RS00925 at 227.321 kb on + strand, within HMPREF1078_RS00925 at 227.322 kb on - strand, within HMPREF1078_RS00925 at 227.322 kb on - strand, within HMPREF1078_RS00925 at 227.322 kb on - strand, within HMPREF1078_RS00925 at 227.464 kb on - strand, within HMPREF1078_RS00925 at 227.488 kb on - strand, within HMPREF1078_RS00925 at 227.488 kb on - strand, within HMPREF1078_RS00925 at 227.496 kb on - strand, within HMPREF1078_RS00925 at 227.496 kb on - strand, within HMPREF1078_RS00925 at 227.508 kb on + strand, within HMPREF1078_RS00925 at 227.516 kb on - strand at 227.516 kb on - strand at 227.532 kb on + strand at 227.533 kb on - strand at 227.564 kb on + strand at 227.564 kb on + strand at 227.565 kb on - strand at 227.565 kb on - strand at 227.597 kb on + strand at 227.597 kb on + strand at 227.597 kb on + strand at 227.597 kb on + strand at 227.597 kb on + strand at 227.597 kb on + strand at 227.597 kb on + strand at 227.597 kb on + strand at 227.598 kb on - strand at 227.599 kb on + strand at 227.599 kb on + strand at 227.599 kb on + strand at 227.600 kb on - strand at 227.600 kb on - strand at 227.600 kb on - strand at 227.600 kb on - strand at 227.600 kb on - strand at 227.626 kb on - strand at 227.645 kb on - strand at 227.742 kb on + strand, within HMPREF1078_RS00930 at 227.753 kb on + strand, within HMPREF1078_RS00930 at 227.753 kb on + strand, within HMPREF1078_RS00930 at 227.755 kb on + strand, within HMPREF1078_RS00930 at 227.755 kb on + strand, within HMPREF1078_RS00930 at 227.756 kb on - strand, within HMPREF1078_RS00930 at 227.782 kb on + strand, within HMPREF1078_RS00930 at 227.865 kb on + strand, within HMPREF1078_RS00930 at 227.865 kb on + strand, within HMPREF1078_RS00930 at 227.866 kb on - strand, within HMPREF1078_RS00930 at 227.990 kb on + strand, within HMPREF1078_RS00930 at 227.991 kb on - strand, within HMPREF1078_RS00930 at 227.991 kb on - strand, within HMPREF1078_RS00930 at 227.991 kb on - strand, within HMPREF1078_RS00930 at 228.143 kb on + strand, within HMPREF1078_RS00930 at 228.207 kb on - strand, within HMPREF1078_RS00930 at 228.239 kb on + strand, within HMPREF1078_RS00930 at 228.239 kb on + strand, within HMPREF1078_RS00930 at 228.242 kb on - strand, within HMPREF1078_RS00930 at 228.244 kb on + strand, within HMPREF1078_RS00930 at 228.274 kb on - strand, within HMPREF1078_RS00930 at 228.274 kb on - strand, within HMPREF1078_RS00930 at 228.274 kb on - strand, within HMPREF1078_RS00930 at 228.293 kb on + strand, within HMPREF1078_RS00930 at 228.343 kb on + strand, within HMPREF1078_RS00930 at 228.347 kb on + strand, within HMPREF1078_RS00930 at 228.420 kb on + strand, within HMPREF1078_RS00930 at 228.500 kb on + strand, within HMPREF1078_RS00930
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mg/mL (C) remove 226,142 - HMPREF1078_RS00915 0.81 -0.5 226,142 - HMPREF1078_RS00915 0.81 -0.5 226,267 - HMPREF1078_RS00915 0.87 -0.4 226,309 + HMPREF1078_RS00915 0.89 -2.2 226,402 - -0.5 226,404 + -0.2 226,404 + +0.6 226,405 - -0.8 226,405 - +0.6 226,408 + +0.1 226,408 + -0.6 226,408 + +0.9 226,409 - -0.4 226,409 - +1.1 226,464 + -0.9 226,518 + -0.8 226,518 + +0.1 226,570 + +0.2 226,595 + -0.2 226,596 - +0.1 226,638 + -2.6 226,649 + -1.6 226,649 + +0.1 226,653 + -2.1 226,653 + -1.3 226,653 + +0.0 226,654 - +0.1 226,654 - +0.4 226,654 - +0.3 226,654 - -0.2 226,654 - +0.1 226,655 + -1.1 226,656 - +0.5 226,668 + +0.3 226,669 - -2.1 226,678 + -2.5 226,678 + +0.7 226,678 + +0.1 226,679 - -0.8 226,688 - +0.3 226,733 - -2.5 226,765 + +0.5 226,766 - -0.1 226,812 + -0.9 226,813 - -0.4 226,848 - -0.0 226,849 + -0.4 226,850 - +0.5 226,850 - +0.0 226,852 - -0.1 226,863 + +0.1 226,863 + +0.5 226,863 + +0.3 226,864 - -0.5 226,864 - -0.0 226,864 - +1.4 226,864 - -0.5 226,867 + +0.1 226,867 + +0.5 226,867 + -0.0 226,867 + -0.0 226,867 + +0.7 226,867 + -0.5 226,867 + -2.0 226,867 + -0.0 226,867 + +0.8 226,868 - -1.8 226,868 - +0.3 226,868 - +0.0 226,868 - +0.0 226,868 - -0.2 226,868 - -1.7 226,868 - -0.1 226,868 - +0.4 226,893 + -3.3 226,893 + -0.3 226,893 + +0.0 226,916 + +1.4 226,918 + +0.3 226,918 + +1.1 226,929 - -0.9 226,936 + +0.3 226,937 - -2.5 226,940 + +0.1 226,941 + +0.4 226,941 - -0.1 226,947 - +0.0 226,992 + +0.4 226,992 + -0.2 227,001 - +0.2 227,008 - -0.8 227,024 - +0.5 227,038 + +0.6 227,038 + +0.9 227,039 - -2.7 227,039 - -2.4 227,048 + +0.1 227,048 + -1.1 227,048 + -0.6 227,048 + -0.8 227,049 - -0.2 227,049 - -2.1 227,099 + -2.9 227,108 + HMPREF1078_RS00925 0.11 -4.3 227,108 + HMPREF1078_RS00925 0.11 -0.6 227,108 + HMPREF1078_RS00925 0.11 -2.6 227,108 + HMPREF1078_RS00925 0.11 -3.1 227,109 - HMPREF1078_RS00925 0.11 -1.8 227,109 - HMPREF1078_RS00925 0.11 -2.2 227,109 - HMPREF1078_RS00925 0.11 -1.8 227,235 + HMPREF1078_RS00925 0.35 -2.6 227,235 + HMPREF1078_RS00925 0.35 -2.3 227,236 - HMPREF1078_RS00925 0.35 -0.9 227,236 - HMPREF1078_RS00925 0.35 -3.0 227,239 + HMPREF1078_RS00925 0.36 -3.0 227,239 + HMPREF1078_RS00925 0.36 -4.6 227,240 - HMPREF1078_RS00925 0.36 -2.4 227,240 - HMPREF1078_RS00925 0.36 -3.1 227,246 + HMPREF1078_RS00925 0.37 +0.5 227,246 + HMPREF1078_RS00925 0.37 -0.3 227,246 + HMPREF1078_RS00925 0.37 -2.3 227,247 - HMPREF1078_RS00925 0.38 -4.0 227,256 + HMPREF1078_RS00925 0.39 -4.2 227,263 + HMPREF1078_RS00925 0.41 -3.8 227,264 - HMPREF1078_RS00925 0.41 -2.7 227,297 + HMPREF1078_RS00925 0.47 -3.7 227,297 + HMPREF1078_RS00925 0.47 -1.5 227,297 + HMPREF1078_RS00925 0.47 -2.2 227,297 + HMPREF1078_RS00925 0.47 -2.8 227,321 + HMPREF1078_RS00925 0.52 -2.8 227,321 + HMPREF1078_RS00925 0.52 -3.4 227,321 + HMPREF1078_RS00925 0.52 -4.7 227,322 - HMPREF1078_RS00925 0.52 +0.3 227,322 - HMPREF1078_RS00925 0.52 -3.4 227,322 - HMPREF1078_RS00925 0.52 -2.7 227,464 - HMPREF1078_RS00925 0.80 -3.2 227,488 - HMPREF1078_RS00925 0.85 -2.1 227,488 - HMPREF1078_RS00925 0.85 -2.3 227,496 - HMPREF1078_RS00925 0.86 -4.1 227,496 - HMPREF1078_RS00925 0.86 -4.9 227,508 + HMPREF1078_RS00925 0.88 -3.5 227,516 - -4.1 227,516 - -1.8 227,532 + -0.0 227,533 - -4.0 227,564 + +0.2 227,564 + +0.5 227,565 - +0.9 227,565 - -1.1 227,597 + -2.3 227,597 + +0.5 227,597 + -0.3 227,597 + -1.0 227,597 + +0.6 227,597 + -2.1 227,597 + -1.4 227,597 + -0.3 227,598 - +0.3 227,599 + +0.4 227,599 + -0.1 227,599 + -1.5 227,600 - -0.2 227,600 - -0.8 227,600 - -1.1 227,600 - -1.3 227,600 - +2.3 227,626 - +0.3 227,645 - -0.5 227,742 + HMPREF1078_RS00930 0.11 -0.7 227,753 + HMPREF1078_RS00930 0.12 -0.6 227,753 + HMPREF1078_RS00930 0.12 -0.7 227,755 + HMPREF1078_RS00930 0.12 -2.1 227,755 + HMPREF1078_RS00930 0.12 +1.2 227,756 - HMPREF1078_RS00930 0.12 +1.7 227,782 + HMPREF1078_RS00930 0.13 -0.6 227,865 + HMPREF1078_RS00930 0.19 +0.0 227,865 + HMPREF1078_RS00930 0.19 -0.1 227,866 - HMPREF1078_RS00930 0.19 -0.5 227,990 + HMPREF1078_RS00930 0.27 -1.0 227,991 - HMPREF1078_RS00930 0.27 -1.3 227,991 - HMPREF1078_RS00930 0.27 +0.0 227,991 - HMPREF1078_RS00930 0.27 +0.2 228,143 + HMPREF1078_RS00930 0.37 -0.3 228,207 - HMPREF1078_RS00930 0.41 +0.3 228,239 + HMPREF1078_RS00930 0.43 -1.4 228,239 + HMPREF1078_RS00930 0.43 +0.4 228,242 - HMPREF1078_RS00930 0.44 -0.3 228,244 + HMPREF1078_RS00930 0.44 +0.5 228,274 - HMPREF1078_RS00930 0.46 +0.0 228,274 - HMPREF1078_RS00930 0.46 +0.2 228,274 - HMPREF1078_RS00930 0.46 +0.1 228,293 + HMPREF1078_RS00930 0.47 +0.7 228,343 + HMPREF1078_RS00930 0.50 -0.5 228,347 + HMPREF1078_RS00930 0.51 +0.9 228,420 + HMPREF1078_RS00930 0.55 +0.0 228,500 + HMPREF1078_RS00930 0.61 +0.5
Or see this region's nucleotide sequence