Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS00125

Experiment: D-Mannose 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS00120 and HMPREF1078_RS00125 are separated by 22 nucleotidesHMPREF1078_RS00125 and HMPREF1078_RS00130 overlap by 4 nucleotidesHMPREF1078_RS00130 and HMPREF1078_RS00135 are separated by 10 nucleotides HMPREF1078_RS00120: HMPREF1078_RS00120 - tryptophan synthase subunit alpha, at 28,390 to 29,160 _RS00120 HMPREF1078_RS00125: HMPREF1078_RS00125 - phosphoribosylanthranilate isomerase, at 29,183 to 29,848 _RS00125 HMPREF1078_RS00130: HMPREF1078_RS00130 - indole-3-glycerol phosphate synthase TrpC, at 29,845 to 30,654 _RS00130 HMPREF1078_RS00135: HMPREF1078_RS00135 - anthranilate phosphoribosyltransferase, at 30,665 to 31,669 _RS00135 Position (kb) 29 30Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 28.196 kb on + strandat 28.206 kb on + strandat 28.225 kb on - strandat 28.272 kb on + strandat 28.289 kb on - strandat 28.324 kb on - strandat 28.450 kb on + strandat 28.471 kb on + strand, within HMPREF1078_RS00120at 28.472 kb on - strand, within HMPREF1078_RS00120at 28.472 kb on - strand, within HMPREF1078_RS00120at 28.472 kb on - strand, within HMPREF1078_RS00120at 28.492 kb on - strand, within HMPREF1078_RS00120at 28.494 kb on + strand, within HMPREF1078_RS00120at 28.498 kb on + strand, within HMPREF1078_RS00120at 28.499 kb on - strand, within HMPREF1078_RS00120at 28.499 kb on - strand, within HMPREF1078_RS00120at 28.640 kb on - strand, within HMPREF1078_RS00120at 28.646 kb on + strand, within HMPREF1078_RS00120at 28.647 kb on - strand, within HMPREF1078_RS00120at 28.662 kb on + strand, within HMPREF1078_RS00120at 28.662 kb on + strand, within HMPREF1078_RS00120at 28.663 kb on - strand, within HMPREF1078_RS00120at 28.663 kb on - strand, within HMPREF1078_RS00120at 28.663 kb on - strand, within HMPREF1078_RS00120at 28.716 kb on + strand, within HMPREF1078_RS00120at 28.734 kb on - strand, within HMPREF1078_RS00120at 28.754 kb on + strand, within HMPREF1078_RS00120at 28.764 kb on + strand, within HMPREF1078_RS00120at 28.766 kb on + strand, within HMPREF1078_RS00120at 28.767 kb on - strand, within HMPREF1078_RS00120at 28.767 kb on - strand, within HMPREF1078_RS00120at 28.767 kb on - strand, within HMPREF1078_RS00120at 28.767 kb on - strand, within HMPREF1078_RS00120at 28.767 kb on - strand, within HMPREF1078_RS00120at 28.804 kb on + strand, within HMPREF1078_RS00120at 28.848 kb on - strand, within HMPREF1078_RS00120at 28.909 kb on - strand, within HMPREF1078_RS00120at 28.915 kb on + strand, within HMPREF1078_RS00120at 29.027 kb on - strand, within HMPREF1078_RS00120at 29.035 kb on + strand, within HMPREF1078_RS00120at 29.035 kb on + strand, within HMPREF1078_RS00120at 29.035 kb on - strand, within HMPREF1078_RS00120at 29.036 kb on - strand, within HMPREF1078_RS00120at 29.050 kb on + strand, within HMPREF1078_RS00120at 29.059 kb on + strand, within HMPREF1078_RS00120at 29.059 kb on + strand, within HMPREF1078_RS00120at 29.223 kb on - strandat 29.231 kb on + strandat 29.232 kb on - strandat 29.309 kb on + strand, within HMPREF1078_RS00125at 29.309 kb on + strand, within HMPREF1078_RS00125at 29.310 kb on - strand, within HMPREF1078_RS00125at 29.416 kb on - strand, within HMPREF1078_RS00125at 29.419 kb on + strand, within HMPREF1078_RS00125at 29.420 kb on - strand, within HMPREF1078_RS00125at 29.662 kb on + strand, within HMPREF1078_RS00125at 29.720 kb on + strand, within HMPREF1078_RS00125at 29.720 kb on + strand, within HMPREF1078_RS00125at 29.734 kb on + strand, within HMPREF1078_RS00125at 29.738 kb on + strand, within HMPREF1078_RS00125at 29.739 kb on - strand, within HMPREF1078_RS00125at 29.766 kb on - strand, within HMPREF1078_RS00125at 29.775 kb on - strand, within HMPREF1078_RS00125at 29.851 kb on + strandat 29.852 kb on - strandat 29.861 kb on - strandat 29.887 kb on + strandat 29.887 kb on + strandat 29.990 kb on - strand, within HMPREF1078_RS00130at 30.003 kb on + strand, within HMPREF1078_RS00130at 30.067 kb on - strand, within HMPREF1078_RS00130at 30.090 kb on + strand, within HMPREF1078_RS00130at 30.106 kb on - strand, within HMPREF1078_RS00130at 30.178 kb on - strand, within HMPREF1078_RS00130at 30.198 kb on + strand, within HMPREF1078_RS00130at 30.257 kb on - strand, within HMPREF1078_RS00130at 30.350 kb on - strand, within HMPREF1078_RS00130at 30.434 kb on - strand, within HMPREF1078_RS00130at 30.435 kb on + strand, within HMPREF1078_RS00130at 30.436 kb on - strand, within HMPREF1078_RS00130at 30.451 kb on + strand, within HMPREF1078_RS00130at 30.619 kb on + strandat 30.629 kb on - strandat 30.630 kb on + strandat 30.631 kb on - strandat 30.631 kb on - strandat 30.633 kb on + strandat 30.633 kb on + strandat 30.634 kb on - strandat 30.640 kb on + strandat 30.641 kb on - strandat 30.641 kb on - strandat 30.643 kb on + strandat 30.643 kb on + strandat 30.644 kb on - strandat 30.644 kb on - strandat 30.645 kb on + strandat 30.645 kb on + strandat 30.646 kb on - strandat 30.646 kb on - strandat 30.654 kb on + strandat 30.654 kb on + strandat 30.654 kb on + strandat 30.697 kb on + strandat 30.719 kb on - strandat 30.812 kb on + strand, within HMPREF1078_RS00135

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose 10 mg/mL (C)
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28,196 + +0.7
28,206 + -0.9
28,225 - -0.4
28,272 + +0.8
28,289 - +0.1
28,324 - -0.5
28,450 + -1.1
28,471 + HMPREF1078_RS00120 0.11 -1.6
28,472 - HMPREF1078_RS00120 0.11 -1.4
28,472 - HMPREF1078_RS00120 0.11 -0.8
28,472 - HMPREF1078_RS00120 0.11 -3.1
28,492 - HMPREF1078_RS00120 0.13 -3.5
28,494 + HMPREF1078_RS00120 0.13 -4.1
28,498 + HMPREF1078_RS00120 0.14 -2.3
28,499 - HMPREF1078_RS00120 0.14 -3.3
28,499 - HMPREF1078_RS00120 0.14 -2.6
28,640 - HMPREF1078_RS00120 0.32 -3.2
28,646 + HMPREF1078_RS00120 0.33 -0.2
28,647 - HMPREF1078_RS00120 0.33 -0.7
28,662 + HMPREF1078_RS00120 0.35 -3.2
28,662 + HMPREF1078_RS00120 0.35 -1.5
28,663 - HMPREF1078_RS00120 0.35 -3.2
28,663 - HMPREF1078_RS00120 0.35 -2.8
28,663 - HMPREF1078_RS00120 0.35 -1.1
28,716 + HMPREF1078_RS00120 0.42 -3.9
28,734 - HMPREF1078_RS00120 0.45 -3.5
28,754 + HMPREF1078_RS00120 0.47 -2.5
28,764 + HMPREF1078_RS00120 0.49 -3.8
28,766 + HMPREF1078_RS00120 0.49 -2.5
28,767 - HMPREF1078_RS00120 0.49 -4.3
28,767 - HMPREF1078_RS00120 0.49 -1.9
28,767 - HMPREF1078_RS00120 0.49 -1.2
28,767 - HMPREF1078_RS00120 0.49 -2.4
28,767 - HMPREF1078_RS00120 0.49 -4.3
28,804 + HMPREF1078_RS00120 0.54 -3.8
28,848 - HMPREF1078_RS00120 0.59 -5.4
28,909 - HMPREF1078_RS00120 0.67 -3.6
28,915 + HMPREF1078_RS00120 0.68 -4.5
29,027 - HMPREF1078_RS00120 0.83 -2.5
29,035 + HMPREF1078_RS00120 0.84 -4.1
29,035 + HMPREF1078_RS00120 0.84 -1.5
29,035 - HMPREF1078_RS00120 0.84 -3.9
29,036 - HMPREF1078_RS00120 0.84 -0.5
29,050 + HMPREF1078_RS00120 0.86 -4.5
29,059 + HMPREF1078_RS00120 0.87 -2.2
29,059 + HMPREF1078_RS00120 0.87 -3.0
29,223 - -3.2
29,231 + -3.9
29,232 - -3.0
29,309 + HMPREF1078_RS00125 0.19 -1.0
29,309 + HMPREF1078_RS00125 0.19 -2.0
29,310 - HMPREF1078_RS00125 0.19 -3.8
29,416 - HMPREF1078_RS00125 0.35 -4.5
29,419 + HMPREF1078_RS00125 0.35 -0.8
29,420 - HMPREF1078_RS00125 0.36 -3.7
29,662 + HMPREF1078_RS00125 0.72 -3.9
29,720 + HMPREF1078_RS00125 0.81 -3.1
29,720 + HMPREF1078_RS00125 0.81 -2.9
29,734 + HMPREF1078_RS00125 0.83 -0.7
29,738 + HMPREF1078_RS00125 0.83 -3.2
29,739 - HMPREF1078_RS00125 0.83 -6.0
29,766 - HMPREF1078_RS00125 0.88 -4.0
29,775 - HMPREF1078_RS00125 0.89 -4.2
29,851 + -3.3
29,852 - -0.3
29,861 - +0.3
29,887 + -2.6
29,887 + -2.9
29,990 - HMPREF1078_RS00130 0.18 -3.7
30,003 + HMPREF1078_RS00130 0.20 -3.2
30,067 - HMPREF1078_RS00130 0.27 -2.2
30,090 + HMPREF1078_RS00130 0.30 -3.2
30,106 - HMPREF1078_RS00130 0.32 -3.4
30,178 - HMPREF1078_RS00130 0.41 -3.6
30,198 + HMPREF1078_RS00130 0.44 -2.1
30,257 - HMPREF1078_RS00130 0.51 -4.1
30,350 - HMPREF1078_RS00130 0.62 -3.3
30,434 - HMPREF1078_RS00130 0.73 -1.2
30,435 + HMPREF1078_RS00130 0.73 -3.4
30,436 - HMPREF1078_RS00130 0.73 -1.5
30,451 + HMPREF1078_RS00130 0.75 -2.3
30,619 + -2.9
30,629 - -3.0
30,630 + -3.2
30,631 - -2.8
30,631 - -4.2
30,633 + -1.4
30,633 + -1.8
30,634 - -3.6
30,640 + -3.2
30,641 - -1.8
30,641 - -3.3
30,643 + +0.0
30,643 + -3.3
30,644 - -2.4
30,644 - -3.8
30,645 + -2.4
30,645 + -1.0
30,646 - -2.7
30,646 - -1.9
30,654 + -3.6
30,654 + -3.0
30,654 + -1.0
30,697 + -3.1
30,719 - -3.8
30,812 + HMPREF1078_RS00135 0.15 -4.1

Or see this region's nucleotide sequence