Experiment: D-Mannose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS00080 and HMPREF1078_RS00085 are separated by 14 nucleotides HMPREF1078_RS00085 and HMPREF1078_RS00090 are separated by 7 nucleotides HMPREF1078_RS00090 and HMPREF1078_RS00095 are separated by 72 nucleotides
HMPREF1078_RS00080: HMPREF1078_RS00080 - polysaccharide deacetylase family protein, at 19,224 to 20,540
_RS00080
HMPREF1078_RS00085: HMPREF1078_RS00085 - PIG-L family deacetylase, at 20,555 to 21,193
_RS00085
HMPREF1078_RS00090: HMPREF1078_RS00090 - GNAT family N-acetyltransferase, at 21,201 to 22,160
_RS00090
HMPREF1078_RS00095: HMPREF1078_RS00095 - recombinase RecA, at 22,233 to 23,276
_RS00095
Position (kb) 21
22
23 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 20.212 kb on - strand, within HMPREF1078_RS00080 at 20.270 kb on + strand, within HMPREF1078_RS00080 at 20.273 kb on - strand, within HMPREF1078_RS00080 at 20.280 kb on + strand, within HMPREF1078_RS00080 at 20.280 kb on + strand, within HMPREF1078_RS00080 at 20.280 kb on + strand, within HMPREF1078_RS00080 at 20.280 kb on + strand, within HMPREF1078_RS00080 at 20.280 kb on + strand, within HMPREF1078_RS00080 at 20.281 kb on - strand, within HMPREF1078_RS00080 at 20.281 kb on - strand, within HMPREF1078_RS00080 at 20.281 kb on - strand, within HMPREF1078_RS00080 at 20.281 kb on - strand, within HMPREF1078_RS00080 at 20.308 kb on - strand, within HMPREF1078_RS00080 at 20.334 kb on + strand, within HMPREF1078_RS00080 at 20.334 kb on + strand, within HMPREF1078_RS00080 at 20.343 kb on + strand, within HMPREF1078_RS00080 at 20.344 kb on - strand, within HMPREF1078_RS00080 at 20.358 kb on + strand, within HMPREF1078_RS00080 at 20.359 kb on - strand, within HMPREF1078_RS00080 at 20.359 kb on - strand, within HMPREF1078_RS00080 at 20.432 kb on - strand at 20.481 kb on + strand at 20.482 kb on - strand at 20.482 kb on - strand at 20.522 kb on - strand at 20.522 kb on - strand at 20.540 kb on + strand at 20.540 kb on + strand at 20.540 kb on + strand at 20.540 kb on + strand at 20.556 kb on + strand at 20.573 kb on + strand at 20.574 kb on - strand at 20.638 kb on + strand, within HMPREF1078_RS00085 at 20.656 kb on - strand, within HMPREF1078_RS00085 at 20.656 kb on - strand, within HMPREF1078_RS00085 at 20.680 kb on - strand, within HMPREF1078_RS00085 at 20.680 kb on - strand, within HMPREF1078_RS00085 at 20.680 kb on - strand, within HMPREF1078_RS00085 at 20.719 kb on + strand, within HMPREF1078_RS00085 at 20.719 kb on + strand, within HMPREF1078_RS00085 at 20.831 kb on - strand, within HMPREF1078_RS00085 at 20.831 kb on - strand, within HMPREF1078_RS00085 at 20.831 kb on - strand, within HMPREF1078_RS00085 at 20.831 kb on - strand, within HMPREF1078_RS00085 at 20.852 kb on + strand, within HMPREF1078_RS00085 at 20.853 kb on - strand, within HMPREF1078_RS00085 at 20.932 kb on - strand, within HMPREF1078_RS00085 at 20.932 kb on - strand, within HMPREF1078_RS00085 at 20.941 kb on + strand, within HMPREF1078_RS00085 at 20.953 kb on - strand, within HMPREF1078_RS00085 at 20.953 kb on - strand, within HMPREF1078_RS00085 at 20.958 kb on + strand, within HMPREF1078_RS00085 at 20.958 kb on + strand, within HMPREF1078_RS00085 at 20.959 kb on - strand, within HMPREF1078_RS00085 at 20.959 kb on - strand, within HMPREF1078_RS00085 at 21.025 kb on + strand, within HMPREF1078_RS00085 at 21.026 kb on - strand, within HMPREF1078_RS00085 at 21.078 kb on + strand, within HMPREF1078_RS00085 at 21.078 kb on + strand, within HMPREF1078_RS00085 at 21.078 kb on + strand, within HMPREF1078_RS00085 at 21.078 kb on + strand, within HMPREF1078_RS00085 at 21.078 kb on + strand, within HMPREF1078_RS00085 at 21.078 kb on + strand, within HMPREF1078_RS00085 at 21.079 kb on - strand, within HMPREF1078_RS00085 at 21.113 kb on + strand, within HMPREF1078_RS00085 at 21.114 kb on - strand, within HMPREF1078_RS00085 at 21.167 kb on + strand at 21.168 kb on - strand at 21.169 kb on + strand at 21.170 kb on - strand at 21.170 kb on - strand at 21.173 kb on - strand at 21.175 kb on + strand at 21.176 kb on - strand at 21.176 kb on - strand at 21.176 kb on - strand at 21.178 kb on - strand at 21.178 kb on - strand at 21.197 kb on + strand at 21.211 kb on - strand at 21.222 kb on + strand at 21.244 kb on - strand at 21.360 kb on - strand, within HMPREF1078_RS00090 at 21.448 kb on + strand, within HMPREF1078_RS00090 at 21.449 kb on - strand, within HMPREF1078_RS00090 at 21.449 kb on - strand, within HMPREF1078_RS00090 at 21.512 kb on - strand, within HMPREF1078_RS00090 at 21.523 kb on - strand, within HMPREF1078_RS00090 at 21.567 kb on + strand, within HMPREF1078_RS00090 at 21.668 kb on + strand, within HMPREF1078_RS00090 at 21.669 kb on - strand, within HMPREF1078_RS00090 at 21.669 kb on - strand, within HMPREF1078_RS00090 at 21.673 kb on + strand, within HMPREF1078_RS00090 at 21.673 kb on + strand, within HMPREF1078_RS00090 at 21.719 kb on + strand, within HMPREF1078_RS00090 at 21.720 kb on - strand, within HMPREF1078_RS00090 at 21.762 kb on - strand, within HMPREF1078_RS00090 at 21.762 kb on - strand, within HMPREF1078_RS00090 at 21.762 kb on - strand, within HMPREF1078_RS00090 at 21.763 kb on + strand, within HMPREF1078_RS00090 at 21.763 kb on + strand, within HMPREF1078_RS00090 at 21.764 kb on - strand, within HMPREF1078_RS00090 at 21.764 kb on - strand, within HMPREF1078_RS00090 at 21.770 kb on - strand, within HMPREF1078_RS00090 at 21.770 kb on - strand, within HMPREF1078_RS00090 at 21.848 kb on - strand, within HMPREF1078_RS00090 at 21.854 kb on - strand, within HMPREF1078_RS00090 at 21.854 kb on - strand, within HMPREF1078_RS00090 at 21.885 kb on + strand, within HMPREF1078_RS00090 at 21.886 kb on - strand, within HMPREF1078_RS00090 at 21.983 kb on + strand, within HMPREF1078_RS00090 at 21.983 kb on + strand, within HMPREF1078_RS00090 at 21.984 kb on - strand, within HMPREF1078_RS00090 at 21.986 kb on + strand, within HMPREF1078_RS00090 at 21.987 kb on - strand, within HMPREF1078_RS00090 at 21.987 kb on - strand, within HMPREF1078_RS00090 at 22.003 kb on + strand, within HMPREF1078_RS00090 at 22.116 kb on - strand at 22.141 kb on + strand at 22.142 kb on - strand at 22.175 kb on - strand at 22.196 kb on + strand at 22.211 kb on + strand at 22.334 kb on + strand at 22.335 kb on - strand at 22.345 kb on + strand, within HMPREF1078_RS00095 at 22.346 kb on - strand, within HMPREF1078_RS00095 at 22.352 kb on - strand, within HMPREF1078_RS00095 at 22.371 kb on - strand, within HMPREF1078_RS00095 at 22.401 kb on + strand, within HMPREF1078_RS00095 at 22.402 kb on - strand, within HMPREF1078_RS00095 at 22.402 kb on - strand, within HMPREF1078_RS00095 at 22.421 kb on + strand, within HMPREF1078_RS00095 at 22.421 kb on + strand, within HMPREF1078_RS00095 at 22.421 kb on + strand, within HMPREF1078_RS00095 at 22.486 kb on - strand, within HMPREF1078_RS00095 at 22.514 kb on + strand, within HMPREF1078_RS00095 at 22.570 kb on + strand, within HMPREF1078_RS00095 at 22.653 kb on + strand, within HMPREF1078_RS00095 at 22.653 kb on + strand, within HMPREF1078_RS00095 at 22.653 kb on + strand, within HMPREF1078_RS00095 at 22.655 kb on + strand, within HMPREF1078_RS00095 at 22.655 kb on + strand, within HMPREF1078_RS00095 at 22.655 kb on + strand, within HMPREF1078_RS00095 at 22.655 kb on + strand, within HMPREF1078_RS00095 at 22.655 kb on + strand, within HMPREF1078_RS00095 at 22.655 kb on + strand, within HMPREF1078_RS00095 at 22.655 kb on + strand, within HMPREF1078_RS00095 at 22.655 kb on + strand, within HMPREF1078_RS00095 at 22.655 kb on + strand, within HMPREF1078_RS00095 at 22.655 kb on + strand, within HMPREF1078_RS00095 at 22.656 kb on - strand, within HMPREF1078_RS00095 at 22.656 kb on - strand, within HMPREF1078_RS00095 at 22.656 kb on - strand, within HMPREF1078_RS00095 at 22.656 kb on - strand, within HMPREF1078_RS00095 at 22.656 kb on - strand, within HMPREF1078_RS00095 at 22.656 kb on - strand, within HMPREF1078_RS00095 at 22.656 kb on - strand, within HMPREF1078_RS00095 at 22.656 kb on - strand, within HMPREF1078_RS00095 at 22.656 kb on - strand, within HMPREF1078_RS00095 at 22.656 kb on - strand, within HMPREF1078_RS00095 at 22.656 kb on - strand, within HMPREF1078_RS00095 at 22.656 kb on - strand, within HMPREF1078_RS00095 at 22.656 kb on - strand, within HMPREF1078_RS00095 at 22.673 kb on + strand, within HMPREF1078_RS00095 at 22.674 kb on - strand, within HMPREF1078_RS00095 at 22.695 kb on - strand, within HMPREF1078_RS00095 at 22.696 kb on - strand, within HMPREF1078_RS00095 at 22.714 kb on - strand, within HMPREF1078_RS00095 at 22.725 kb on + strand, within HMPREF1078_RS00095 at 22.749 kb on - strand, within HMPREF1078_RS00095 at 22.802 kb on + strand, within HMPREF1078_RS00095 at 22.805 kb on + strand, within HMPREF1078_RS00095 at 22.827 kb on + strand, within HMPREF1078_RS00095 at 22.827 kb on + strand, within HMPREF1078_RS00095 at 22.896 kb on + strand, within HMPREF1078_RS00095 at 22.896 kb on + strand, within HMPREF1078_RS00095 at 22.896 kb on + strand, within HMPREF1078_RS00095 at 22.897 kb on + strand, within HMPREF1078_RS00095 at 22.897 kb on - strand, within HMPREF1078_RS00095 at 22.897 kb on - strand, within HMPREF1078_RS00095 at 22.947 kb on - strand, within HMPREF1078_RS00095 at 22.958 kb on + strand, within HMPREF1078_RS00095 at 22.958 kb on + strand, within HMPREF1078_RS00095 at 22.959 kb on - strand, within HMPREF1078_RS00095 at 23.030 kb on - strand, within HMPREF1078_RS00095 at 23.051 kb on + strand, within HMPREF1078_RS00095 at 23.070 kb on + strand, within HMPREF1078_RS00095 at 23.070 kb on + strand, within HMPREF1078_RS00095 at 23.070 kb on + strand, within HMPREF1078_RS00095 at 23.071 kb on - strand, within HMPREF1078_RS00095 at 23.071 kb on - strand, within HMPREF1078_RS00095 at 23.071 kb on - strand, within HMPREF1078_RS00095 at 23.071 kb on - strand, within HMPREF1078_RS00095 at 23.090 kb on + strand, within HMPREF1078_RS00095
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mg/mL (C) remove 20,212 - HMPREF1078_RS00080 0.75 -3.4 20,270 + HMPREF1078_RS00080 0.79 +0.8 20,273 - HMPREF1078_RS00080 0.80 -3.1 20,280 + HMPREF1078_RS00080 0.80 -2.7 20,280 + HMPREF1078_RS00080 0.80 -3.5 20,280 + HMPREF1078_RS00080 0.80 -3.1 20,280 + HMPREF1078_RS00080 0.80 -5.2 20,280 + HMPREF1078_RS00080 0.80 -1.7 20,281 - HMPREF1078_RS00080 0.80 -4.9 20,281 - HMPREF1078_RS00080 0.80 -2.9 20,281 - HMPREF1078_RS00080 0.80 +2.3 20,281 - HMPREF1078_RS00080 0.80 -2.9 20,308 - HMPREF1078_RS00080 0.82 -2.1 20,334 + HMPREF1078_RS00080 0.84 -1.6 20,334 + HMPREF1078_RS00080 0.84 -2.5 20,343 + HMPREF1078_RS00080 0.85 -1.8 20,344 - HMPREF1078_RS00080 0.85 -3.7 20,358 + HMPREF1078_RS00080 0.86 -1.8 20,359 - HMPREF1078_RS00080 0.86 -3.0 20,359 - HMPREF1078_RS00080 0.86 -3.7 20,432 - -2.1 20,481 + -4.0 20,482 - -0.5 20,482 - -3.8 20,522 - -3.2 20,522 - -4.6 20,540 + -2.1 20,540 + -1.4 20,540 + -1.6 20,540 + -2.5 20,556 + -1.2 20,573 + -2.7 20,574 - -4.4 20,638 + HMPREF1078_RS00085 0.13 -3.3 20,656 - HMPREF1078_RS00085 0.16 -4.9 20,656 - HMPREF1078_RS00085 0.16 -1.9 20,680 - HMPREF1078_RS00085 0.20 +0.0 20,680 - HMPREF1078_RS00085 0.20 -3.2 20,680 - HMPREF1078_RS00085 0.20 -3.8 20,719 + HMPREF1078_RS00085 0.26 -3.0 20,719 + HMPREF1078_RS00085 0.26 -3.2 20,831 - HMPREF1078_RS00085 0.43 -3.3 20,831 - HMPREF1078_RS00085 0.43 -3.4 20,831 - HMPREF1078_RS00085 0.43 -2.4 20,831 - HMPREF1078_RS00085 0.43 -4.4 20,852 + HMPREF1078_RS00085 0.46 -3.1 20,853 - HMPREF1078_RS00085 0.47 -3.8 20,932 - HMPREF1078_RS00085 0.59 -2.3 20,932 - HMPREF1078_RS00085 0.59 -2.6 20,941 + HMPREF1078_RS00085 0.60 -1.9 20,953 - HMPREF1078_RS00085 0.62 -2.5 20,953 - HMPREF1078_RS00085 0.62 -1.8 20,958 + HMPREF1078_RS00085 0.63 -3.4 20,958 + HMPREF1078_RS00085 0.63 -2.4 20,959 - HMPREF1078_RS00085 0.63 -3.1 20,959 - HMPREF1078_RS00085 0.63 -5.0 21,025 + HMPREF1078_RS00085 0.74 -3.5 21,026 - HMPREF1078_RS00085 0.74 -3.8 21,078 + HMPREF1078_RS00085 0.82 -2.7 21,078 + HMPREF1078_RS00085 0.82 -3.4 21,078 + HMPREF1078_RS00085 0.82 -2.5 21,078 + HMPREF1078_RS00085 0.82 -3.1 21,078 + HMPREF1078_RS00085 0.82 -4.6 21,078 + HMPREF1078_RS00085 0.82 -3.5 21,079 - HMPREF1078_RS00085 0.82 -2.6 21,113 + HMPREF1078_RS00085 0.87 -2.6 21,114 - HMPREF1078_RS00085 0.87 +1.3 21,167 + -2.4 21,168 - -3.2 21,169 + -2.3 21,170 - -3.5 21,170 - -3.0 21,173 - -3.8 21,175 + -1.7 21,176 - -1.9 21,176 - -3.5 21,176 - -3.8 21,178 - -2.4 21,178 - -3.3 21,197 + -1.1 21,211 - -1.1 21,222 + -2.1 21,244 - -0.6 21,360 - HMPREF1078_RS00090 0.17 -4.3 21,448 + HMPREF1078_RS00090 0.26 -0.7 21,449 - HMPREF1078_RS00090 0.26 -4.5 21,449 - HMPREF1078_RS00090 0.26 -1.1 21,512 - HMPREF1078_RS00090 0.32 -1.5 21,523 - HMPREF1078_RS00090 0.34 -2.3 21,567 + HMPREF1078_RS00090 0.38 -2.7 21,668 + HMPREF1078_RS00090 0.49 -2.9 21,669 - HMPREF1078_RS00090 0.49 -3.3 21,669 - HMPREF1078_RS00090 0.49 -1.9 21,673 + HMPREF1078_RS00090 0.49 -3.7 21,673 + HMPREF1078_RS00090 0.49 -4.0 21,719 + HMPREF1078_RS00090 0.54 -4.2 21,720 - HMPREF1078_RS00090 0.54 -3.2 21,762 - HMPREF1078_RS00090 0.58 -3.8 21,762 - HMPREF1078_RS00090 0.58 -2.7 21,762 - HMPREF1078_RS00090 0.58 -1.4 21,763 + HMPREF1078_RS00090 0.59 -2.8 21,763 + HMPREF1078_RS00090 0.59 -4.1 21,764 - HMPREF1078_RS00090 0.59 -4.1 21,764 - HMPREF1078_RS00090 0.59 -4.0 21,770 - HMPREF1078_RS00090 0.59 -3.2 21,770 - HMPREF1078_RS00090 0.59 -4.5 21,848 - HMPREF1078_RS00090 0.67 -3.7 21,854 - HMPREF1078_RS00090 0.68 -4.4 21,854 - HMPREF1078_RS00090 0.68 -2.3 21,885 + HMPREF1078_RS00090 0.71 -1.7 21,886 - HMPREF1078_RS00090 0.71 -3.8 21,983 + HMPREF1078_RS00090 0.81 -3.5 21,983 + HMPREF1078_RS00090 0.81 -1.8 21,984 - HMPREF1078_RS00090 0.82 -4.2 21,986 + HMPREF1078_RS00090 0.82 -3.6 21,987 - HMPREF1078_RS00090 0.82 -3.6 21,987 - HMPREF1078_RS00090 0.82 -4.1 22,003 + HMPREF1078_RS00090 0.84 -4.6 22,116 - -3.6 22,141 + -3.4 22,142 - -1.7 22,175 - -0.8 22,196 + -3.7 22,211 + -4.0 22,334 + -1.6 22,335 - -1.0 22,345 + HMPREF1078_RS00095 0.11 -4.3 22,346 - HMPREF1078_RS00095 0.11 -1.0 22,352 - HMPREF1078_RS00095 0.11 -0.1 22,371 - HMPREF1078_RS00095 0.13 +1.1 22,401 + HMPREF1078_RS00095 0.16 -3.6 22,402 - HMPREF1078_RS00095 0.16 -1.0 22,402 - HMPREF1078_RS00095 0.16 -1.8 22,421 + HMPREF1078_RS00095 0.18 -2.6 22,421 + HMPREF1078_RS00095 0.18 -1.9 22,421 + HMPREF1078_RS00095 0.18 -3.1 22,486 - HMPREF1078_RS00095 0.24 +0.9 22,514 + HMPREF1078_RS00095 0.27 -1.8 22,570 + HMPREF1078_RS00095 0.32 -2.4 22,653 + HMPREF1078_RS00095 0.40 -2.7 22,653 + HMPREF1078_RS00095 0.40 -2.6 22,653 + HMPREF1078_RS00095 0.40 -1.8 22,655 + HMPREF1078_RS00095 0.40 -2.0 22,655 + HMPREF1078_RS00095 0.40 -2.1 22,655 + HMPREF1078_RS00095 0.40 -1.0 22,655 + HMPREF1078_RS00095 0.40 -0.5 22,655 + HMPREF1078_RS00095 0.40 -0.5 22,655 + HMPREF1078_RS00095 0.40 -2.2 22,655 + HMPREF1078_RS00095 0.40 -4.2 22,655 + HMPREF1078_RS00095 0.40 +1.3 22,655 + HMPREF1078_RS00095 0.40 -3.9 22,655 + HMPREF1078_RS00095 0.40 +0.3 22,656 - HMPREF1078_RS00095 0.41 -0.7 22,656 - HMPREF1078_RS00095 0.41 +0.8 22,656 - HMPREF1078_RS00095 0.41 -0.7 22,656 - HMPREF1078_RS00095 0.41 +0.5 22,656 - HMPREF1078_RS00095 0.41 +1.0 22,656 - HMPREF1078_RS00095 0.41 -0.6 22,656 - HMPREF1078_RS00095 0.41 -0.3 22,656 - HMPREF1078_RS00095 0.41 -0.1 22,656 - HMPREF1078_RS00095 0.41 -0.2 22,656 - HMPREF1078_RS00095 0.41 +0.2 22,656 - HMPREF1078_RS00095 0.41 -0.4 22,656 - HMPREF1078_RS00095 0.41 +0.1 22,656 - HMPREF1078_RS00095 0.41 +0.2 22,673 + HMPREF1078_RS00095 0.42 -1.1 22,674 - HMPREF1078_RS00095 0.42 -0.5 22,695 - HMPREF1078_RS00095 0.44 -1.9 22,696 - HMPREF1078_RS00095 0.44 -0.3 22,714 - HMPREF1078_RS00095 0.46 +0.3 22,725 + HMPREF1078_RS00095 0.47 -1.9 22,749 - HMPREF1078_RS00095 0.49 -0.7 22,802 + HMPREF1078_RS00095 0.55 -2.9 22,805 + HMPREF1078_RS00095 0.55 -0.7 22,827 + HMPREF1078_RS00095 0.57 -2.9 22,827 + HMPREF1078_RS00095 0.57 -0.5 22,896 + HMPREF1078_RS00095 0.64 -0.2 22,896 + HMPREF1078_RS00095 0.64 -2.9 22,896 + HMPREF1078_RS00095 0.64 -2.4 22,897 + HMPREF1078_RS00095 0.64 -2.0 22,897 - HMPREF1078_RS00095 0.64 -2.0 22,897 - HMPREF1078_RS00095 0.64 -0.2 22,947 - HMPREF1078_RS00095 0.68 +0.1 22,958 + HMPREF1078_RS00095 0.69 -2.9 22,958 + HMPREF1078_RS00095 0.69 -1.9 22,959 - HMPREF1078_RS00095 0.70 -1.4 23,030 - HMPREF1078_RS00095 0.76 -0.8 23,051 + HMPREF1078_RS00095 0.78 +0.0 23,070 + HMPREF1078_RS00095 0.80 -2.1 23,070 + HMPREF1078_RS00095 0.80 -4.2 23,070 + HMPREF1078_RS00095 0.80 -0.8 23,071 - HMPREF1078_RS00095 0.80 +0.3 23,071 - HMPREF1078_RS00095 0.80 +0.5 23,071 - HMPREF1078_RS00095 0.80 -0.1 23,071 - HMPREF1078_RS00095 0.80 -0.5 23,090 + HMPREF1078_RS00095 0.82 -2.6
Or see this region's nucleotide sequence