Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS00060

Experiment: D-Mannose 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Mannose 10 mg/mL (C)
14,601	-		HMPREF1078_RS00055	0.71	+0.2
14,601	-		HMPREF1078_RS00055	0.71	+0.8
14,660	+		HMPREF1078_RS00055	0.74	+0.3
14,661	-		HMPREF1078_RS00055	0.74	-0.2
14,894	-		HMPREF1078_RS00055	0.83	-0.5
14,987	+		HMPREF1078_RS00055	0.87	-0.8
14,988	-		HMPREF1078_RS00055	0.87	-0.7
15,306	+				+0.8
15,355	-				-0.1
15,423	-				+0.3
15,437	+				-1.2
15,437	+				-0.8
15,438	-				-1.2
15,438	-				-1.2
15,438	-				-1.5
15,439	+				-0.6
15,442	+				-0.5
15,507	+		HMPREF1078_RS00060	0.22	-1.4
15,702	+		HMPREF1078_RS00060	0.74	-0.6
15,706	+		HMPREF1078_RS00060	0.75	-2.1
15,763	-				-0.4
15,763	-				-1.4
15,796	-				+0.6
15,804	+				-0.7
15,805	-				-0.4
15,805	-				-1.8
15,818	-				-1.3
15,834	-				-0.0
15,840	-				-0.4
15,856	-				-0.2
15,870	+				+0.4
15,871	-				-1.4
15,876	-				+0.1
15,910	+				-1.0
15,967	-				-0.6
15,970	+				+0.7
15,971	-				-0.6
16,082	-		HMPREF1078_RS00065	0.21	-0.4
16,176	+		HMPREF1078_RS00065	0.31	-1.6
16,176	+		HMPREF1078_RS00065	0.31	-2.1
16,176	+		HMPREF1078_RS00065	0.31	-0.1
16,256	-		HMPREF1078_RS00065	0.39	-1.6
16,257	+		HMPREF1078_RS00065	0.39	-2.0
16,258	-		HMPREF1078_RS00065	0.39	-1.5
16,259	+		HMPREF1078_RS00065	0.39	-0.3
16,260	-		HMPREF1078_RS00065	0.39	+1.6
16,270	+		HMPREF1078_RS00065	0.40	-1.0
16,278	-		HMPREF1078_RS00065	0.41	-0.2
16,281	-		HMPREF1078_RS00065	0.41	-0.8
16,303	-		HMPREF1078_RS00065	0.43	-0.7
16,328	+		HMPREF1078_RS00065	0.46	+0.4
16,329	-		HMPREF1078_RS00065	0.46	-1.2
16,530	+		HMPREF1078_RS00065	0.66	+0.0
16,531	-		HMPREF1078_RS00065	0.66	-0.5
16,590	-		HMPREF1078_RS00065	0.72	-0.4
16,624	+		HMPREF1078_RS00065	0.76	-1.7
16,624	+		HMPREF1078_RS00065	0.76	-0.1
16,624	+		HMPREF1078_RS00065	0.76	-1.7
16,625	-		HMPREF1078_RS00065	0.76	-0.2
16,625	-		HMPREF1078_RS00065	0.76	+0.8
16,625	-		HMPREF1078_RS00065	0.76	-1.0
16,625	-		HMPREF1078_RS00065	0.76	-0.6
16,652	+		HMPREF1078_RS00065	0.79	+0.1
16,660	-		HMPREF1078_RS00065	0.79	-1.2
16,667	-		HMPREF1078_RS00065	0.80	-0.8
16,684	-		HMPREF1078_RS00065	0.82	-1.6
16,722	-		HMPREF1078_RS00065	0.86	-1.7
16,733	+		HMPREF1078_RS00065	0.87	+1.7
16,734	-		HMPREF1078_RS00065	0.87	+0.1
16,734	-		HMPREF1078_RS00065	0.87	-0.5
16,764	+		HMPREF1078_RS00065	0.90	+0.1
16,764	+		HMPREF1078_RS00065	0.90	-0.3
16,766	+				-1.6
16,767	-				-0.1
16,767	-				+0.5
16,779	-				-0.8
16,782	+				+1.9
16,782	+				-0.3
16,783	-				-1.1