Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS17705

Experiment: D-Glucose 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS17700 and HMPREF1078_RS17705 are separated by 12 nucleotidesHMPREF1078_RS17705 and HMPREF1078_RS17710 are separated by 171 nucleotides HMPREF1078_RS17700: HMPREF1078_RS17700 - HAMP domain-containing sensor histidine kinase, at 104,489 to 105,775 _RS17700 HMPREF1078_RS17705: HMPREF1078_RS17705 - response regulator transcription factor, at 105,788 to 106,474 _RS17705 HMPREF1078_RS17710: HMPREF1078_RS17710 - fumarate hydratase, at 106,646 to 108,286 _RS17710 Position (kb) 105 106 107Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 104.861 kb on + strand, within HMPREF1078_RS17700at 104.861 kb on + strand, within HMPREF1078_RS17700at 104.861 kb on + strand, within HMPREF1078_RS17700at 104.871 kb on + strand, within HMPREF1078_RS17700at 104.872 kb on - strand, within HMPREF1078_RS17700at 104.872 kb on - strand, within HMPREF1078_RS17700at 104.872 kb on - strand, within HMPREF1078_RS17700at 104.969 kb on - strand, within HMPREF1078_RS17700at 104.985 kb on + strand, within HMPREF1078_RS17700at 104.985 kb on + strand, within HMPREF1078_RS17700at 104.986 kb on - strand, within HMPREF1078_RS17700at 104.986 kb on - strand, within HMPREF1078_RS17700at 104.995 kb on + strand, within HMPREF1078_RS17700at 104.996 kb on - strand, within HMPREF1078_RS17700at 104.996 kb on - strand, within HMPREF1078_RS17700at 105.140 kb on + strand, within HMPREF1078_RS17700at 105.140 kb on + strand, within HMPREF1078_RS17700at 105.247 kb on - strand, within HMPREF1078_RS17700at 105.273 kb on + strand, within HMPREF1078_RS17700at 105.273 kb on + strand, within HMPREF1078_RS17700at 105.342 kb on + strand, within HMPREF1078_RS17700at 105.343 kb on - strand, within HMPREF1078_RS17700at 105.377 kb on + strand, within HMPREF1078_RS17700at 105.423 kb on + strand, within HMPREF1078_RS17700at 105.492 kb on - strand, within HMPREF1078_RS17700at 105.493 kb on + strand, within HMPREF1078_RS17700at 105.493 kb on + strand, within HMPREF1078_RS17700at 105.493 kb on + strand, within HMPREF1078_RS17700at 105.493 kb on + strand, within HMPREF1078_RS17700at 105.493 kb on + strand, within HMPREF1078_RS17700at 105.493 kb on + strand, within HMPREF1078_RS17700at 105.494 kb on - strand, within HMPREF1078_RS17700at 105.494 kb on - strand, within HMPREF1078_RS17700at 105.494 kb on - strand, within HMPREF1078_RS17700at 105.495 kb on + strand, within HMPREF1078_RS17700at 105.496 kb on - strand, within HMPREF1078_RS17700at 105.496 kb on - strand, within HMPREF1078_RS17700at 105.496 kb on - strand, within HMPREF1078_RS17700at 105.496 kb on - strand, within HMPREF1078_RS17700at 105.497 kb on + strand, within HMPREF1078_RS17700at 105.497 kb on + strand, within HMPREF1078_RS17700at 105.497 kb on + strand, within HMPREF1078_RS17700at 105.498 kb on - strand, within HMPREF1078_RS17700at 105.568 kb on - strand, within HMPREF1078_RS17700at 105.568 kb on - strand, within HMPREF1078_RS17700at 105.744 kb on - strandat 105.758 kb on - strandat 105.809 kb on + strandat 105.829 kb on - strandat 105.866 kb on + strand, within HMPREF1078_RS17705at 105.973 kb on + strand, within HMPREF1078_RS17705at 105.973 kb on + strand, within HMPREF1078_RS17705at 105.974 kb on - strand, within HMPREF1078_RS17705at 106.183 kb on - strand, within HMPREF1078_RS17705at 106.348 kb on - strand, within HMPREF1078_RS17705at 106.401 kb on + strand, within HMPREF1078_RS17705at 106.401 kb on + strand, within HMPREF1078_RS17705at 106.401 kb on + strand, within HMPREF1078_RS17705at 106.402 kb on - strand, within HMPREF1078_RS17705at 106.402 kb on - strand, within HMPREF1078_RS17705at 106.460 kb on + strandat 106.464 kb on - strandat 106.467 kb on - strandat 106.475 kb on - strandat 106.478 kb on + strandat 106.486 kb on + strandat 106.575 kb on + strandat 106.621 kb on + strandat 106.631 kb on + strandat 106.631 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose 10 mg/mL (C)
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104,861 + HMPREF1078_RS17700 0.29 +0.9
104,861 + HMPREF1078_RS17700 0.29 -0.0
104,861 + HMPREF1078_RS17700 0.29 +0.3
104,871 + HMPREF1078_RS17700 0.30 +0.6
104,872 - HMPREF1078_RS17700 0.30 +1.9
104,872 - HMPREF1078_RS17700 0.30 +2.1
104,872 - HMPREF1078_RS17700 0.30 +0.1
104,969 - HMPREF1078_RS17700 0.37 -0.9
104,985 + HMPREF1078_RS17700 0.39 +0.4
104,985 + HMPREF1078_RS17700 0.39 +0.4
104,986 - HMPREF1078_RS17700 0.39 -0.4
104,986 - HMPREF1078_RS17700 0.39 +1.3
104,995 + HMPREF1078_RS17700 0.39 +1.1
104,996 - HMPREF1078_RS17700 0.39 +1.1
104,996 - HMPREF1078_RS17700 0.39 +0.6
105,140 + HMPREF1078_RS17700 0.51 +1.2
105,140 + HMPREF1078_RS17700 0.51 +1.3
105,247 - HMPREF1078_RS17700 0.59 +1.3
105,273 + HMPREF1078_RS17700 0.61 +1.0
105,273 + HMPREF1078_RS17700 0.61 +2.7
105,342 + HMPREF1078_RS17700 0.66 +1.7
105,343 - HMPREF1078_RS17700 0.66 +1.1
105,377 + HMPREF1078_RS17700 0.69 +1.4
105,423 + HMPREF1078_RS17700 0.73 +1.2
105,492 - HMPREF1078_RS17700 0.78 +1.6
105,493 + HMPREF1078_RS17700 0.78 +0.7
105,493 + HMPREF1078_RS17700 0.78 +0.1
105,493 + HMPREF1078_RS17700 0.78 +0.4
105,493 + HMPREF1078_RS17700 0.78 -0.8
105,493 + HMPREF1078_RS17700 0.78 +1.6
105,493 + HMPREF1078_RS17700 0.78 +0.1
105,494 - HMPREF1078_RS17700 0.78 +0.5
105,494 - HMPREF1078_RS17700 0.78 +0.6
105,494 - HMPREF1078_RS17700 0.78 +1.0
105,495 + HMPREF1078_RS17700 0.78 +0.3
105,496 - HMPREF1078_RS17700 0.78 +2.0
105,496 - HMPREF1078_RS17700 0.78 +0.4
105,496 - HMPREF1078_RS17700 0.78 +1.5
105,496 - HMPREF1078_RS17700 0.78 -2.9
105,497 + HMPREF1078_RS17700 0.78 +1.0
105,497 + HMPREF1078_RS17700 0.78 +1.0
105,497 + HMPREF1078_RS17700 0.78 +0.7
105,498 - HMPREF1078_RS17700 0.78 +0.4
105,568 - HMPREF1078_RS17700 0.84 +2.0
105,568 - HMPREF1078_RS17700 0.84 +1.5
105,744 - +1.2
105,758 - -0.3
105,809 + +0.4
105,829 - +0.7
105,866 + HMPREF1078_RS17705 0.11 -0.1
105,973 + HMPREF1078_RS17705 0.27 -3.4
105,973 + HMPREF1078_RS17705 0.27 +0.4
105,974 - HMPREF1078_RS17705 0.27 -0.7
106,183 - HMPREF1078_RS17705 0.57 -0.2
106,348 - HMPREF1078_RS17705 0.82 +1.0
106,401 + HMPREF1078_RS17705 0.89 -0.4
106,401 + HMPREF1078_RS17705 0.89 -1.0
106,401 + HMPREF1078_RS17705 0.89 +0.8
106,402 - HMPREF1078_RS17705 0.89 -4.4
106,402 - HMPREF1078_RS17705 0.89 -1.5
106,460 + +0.4
106,464 - -0.3
106,467 - +0.4
106,475 - -2.7
106,478 + +0.1
106,486 + +1.6
106,575 + -0.4
106,621 + +1.2
106,631 + -2.3
106,631 + +1.9

Or see this region's nucleotide sequence