Experiment: D-Glucose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS11855 and HMPREF1078_RS11860 are separated by 328 nucleotides HMPREF1078_RS11860 and HMPREF1078_RS11865 are separated by 137 nucleotides
HMPREF1078_RS11855: HMPREF1078_RS11855 - glycoside hydrolase family 2 TIM barrel-domain containing protein, at 313,652 to 316,312
_RS11855
HMPREF1078_RS11860: HMPREF1078_RS11860 - family 20 glycosylhydrolase, at 316,641 to 318,692
_RS11860
HMPREF1078_RS11865: HMPREF1078_RS11865 - RagB/SusD family nutrient uptake outer membrane protein, at 318,830 to 320,380
_RS11865
Position (kb) 316
317
318
319 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 315.731 kb on - strand, within HMPREF1078_RS11855 at 315.772 kb on - strand, within HMPREF1078_RS11855 at 315.775 kb on + strand, within HMPREF1078_RS11855 at 315.775 kb on + strand, within HMPREF1078_RS11855 at 315.775 kb on + strand, within HMPREF1078_RS11855 at 315.776 kb on - strand, within HMPREF1078_RS11855 at 315.776 kb on - strand, within HMPREF1078_RS11855 at 315.777 kb on + strand, within HMPREF1078_RS11855 at 315.961 kb on + strand, within HMPREF1078_RS11855 at 315.961 kb on + strand, within HMPREF1078_RS11855 at 316.015 kb on + strand, within HMPREF1078_RS11855 at 316.015 kb on + strand, within HMPREF1078_RS11855 at 316.054 kb on + strand at 316.080 kb on + strand at 316.162 kb on + strand at 316.300 kb on + strand at 316.315 kb on + strand at 316.321 kb on + strand at 316.321 kb on + strand at 316.326 kb on - strand at 316.339 kb on - strand at 316.345 kb on + strand at 316.347 kb on + strand at 316.347 kb on + strand at 316.347 kb on + strand at 316.347 kb on + strand at 316.348 kb on - strand at 316.348 kb on - strand at 316.348 kb on - strand at 316.381 kb on + strand at 316.408 kb on - strand at 316.427 kb on + strand at 316.428 kb on - strand at 316.476 kb on - strand at 316.601 kb on + strand at 316.602 kb on - strand at 316.642 kb on + strand at 316.687 kb on + strand at 316.691 kb on - strand at 316.940 kb on - strand, within HMPREF1078_RS11860 at 316.964 kb on + strand, within HMPREF1078_RS11860 at 316.965 kb on - strand, within HMPREF1078_RS11860 at 316.977 kb on + strand, within HMPREF1078_RS11860 at 317.063 kb on + strand, within HMPREF1078_RS11860 at 317.112 kb on - strand, within HMPREF1078_RS11860 at 317.242 kb on + strand, within HMPREF1078_RS11860 at 317.441 kb on + strand, within HMPREF1078_RS11860 at 317.519 kb on - strand, within HMPREF1078_RS11860 at 317.579 kb on - strand, within HMPREF1078_RS11860 at 317.579 kb on - strand, within HMPREF1078_RS11860 at 317.682 kb on + strand, within HMPREF1078_RS11860 at 317.683 kb on - strand, within HMPREF1078_RS11860 at 317.727 kb on - strand, within HMPREF1078_RS11860 at 317.917 kb on + strand, within HMPREF1078_RS11860 at 317.917 kb on + strand, within HMPREF1078_RS11860 at 317.918 kb on - strand, within HMPREF1078_RS11860 at 318.168 kb on - strand, within HMPREF1078_RS11860 at 318.199 kb on + strand, within HMPREF1078_RS11860 at 318.199 kb on + strand, within HMPREF1078_RS11860 at 318.347 kb on - strand, within HMPREF1078_RS11860 at 318.389 kb on + strand, within HMPREF1078_RS11860 at 318.390 kb on - strand, within HMPREF1078_RS11860 at 318.390 kb on - strand, within HMPREF1078_RS11860 at 318.410 kb on - strand, within HMPREF1078_RS11860 at 318.410 kb on - strand, within HMPREF1078_RS11860 at 318.470 kb on + strand, within HMPREF1078_RS11860 at 318.470 kb on + strand, within HMPREF1078_RS11860 at 318.470 kb on + strand, within HMPREF1078_RS11860 at 318.471 kb on - strand, within HMPREF1078_RS11860 at 318.512 kb on + strand at 318.563 kb on + strand at 318.670 kb on - strand at 318.675 kb on + strand at 318.684 kb on + strand at 318.685 kb on - strand at 318.697 kb on + strand at 318.697 kb on + strand at 318.697 kb on + strand at 318.702 kb on + strand at 318.771 kb on - strand at 318.802 kb on - strand at 318.807 kb on - strand at 318.809 kb on + strand at 318.809 kb on + strand at 318.810 kb on - strand at 318.814 kb on - strand at 318.855 kb on - strand at 318.884 kb on + strand at 318.884 kb on + strand at 318.885 kb on - strand at 318.886 kb on + strand at 318.886 kb on + strand at 318.887 kb on - strand at 318.891 kb on + strand at 318.895 kb on - strand at 318.900 kb on + strand at 318.910 kb on + strand at 318.911 kb on - strand at 318.956 kb on - strand at 318.967 kb on + strand at 319.072 kb on - strand, within HMPREF1078_RS11865 at 319.072 kb on - strand, within HMPREF1078_RS11865 at 319.072 kb on - strand, within HMPREF1078_RS11865 at 319.090 kb on - strand, within HMPREF1078_RS11865 at 319.090 kb on - strand, within HMPREF1078_RS11865 at 319.168 kb on - strand, within HMPREF1078_RS11865 at 319.200 kb on + strand, within HMPREF1078_RS11865 at 319.200 kb on - strand, within HMPREF1078_RS11865 at 319.287 kb on + strand, within HMPREF1078_RS11865 at 319.288 kb on - strand, within HMPREF1078_RS11865 at 319.292 kb on - strand, within HMPREF1078_RS11865 at 319.338 kb on + strand, within HMPREF1078_RS11865 at 319.342 kb on + strand, within HMPREF1078_RS11865 at 319.342 kb on + strand, within HMPREF1078_RS11865 at 319.342 kb on + strand, within HMPREF1078_RS11865 at 319.342 kb on + strand, within HMPREF1078_RS11865 at 319.342 kb on + strand, within HMPREF1078_RS11865 at 319.342 kb on + strand, within HMPREF1078_RS11865 at 319.343 kb on - strand, within HMPREF1078_RS11865 at 319.343 kb on - strand, within HMPREF1078_RS11865 at 319.343 kb on - strand, within HMPREF1078_RS11865 at 319.343 kb on - strand, within HMPREF1078_RS11865 at 319.343 kb on - strand, within HMPREF1078_RS11865 at 319.417 kb on - strand, within HMPREF1078_RS11865 at 319.541 kb on - strand, within HMPREF1078_RS11865 at 319.645 kb on + strand, within HMPREF1078_RS11865 at 319.645 kb on + strand, within HMPREF1078_RS11865 at 319.645 kb on + strand, within HMPREF1078_RS11865 at 319.645 kb on + strand, within HMPREF1078_RS11865 at 319.645 kb on + strand, within HMPREF1078_RS11865 at 319.646 kb on - strand, within HMPREF1078_RS11865 at 319.646 kb on - strand, within HMPREF1078_RS11865 at 319.646 kb on - strand, within HMPREF1078_RS11865 at 319.646 kb on - strand, within HMPREF1078_RS11865 at 319.648 kb on - strand, within HMPREF1078_RS11865
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose 10 mg/mL (C) remove 315,731 - HMPREF1078_RS11855 0.78 -1.0 315,772 - HMPREF1078_RS11855 0.80 +0.3 315,775 + HMPREF1078_RS11855 0.80 -0.3 315,775 + HMPREF1078_RS11855 0.80 +0.5 315,775 + HMPREF1078_RS11855 0.80 -0.0 315,776 - HMPREF1078_RS11855 0.80 +0.2 315,776 - HMPREF1078_RS11855 0.80 +0.5 315,777 + HMPREF1078_RS11855 0.80 -1.0 315,961 + HMPREF1078_RS11855 0.87 -1.0 315,961 + HMPREF1078_RS11855 0.87 +1.5 316,015 + HMPREF1078_RS11855 0.89 -0.7 316,015 + HMPREF1078_RS11855 0.89 +0.3 316,054 + -0.0 316,080 + -1.5 316,162 + +0.8 316,300 + -1.4 316,315 + -1.9 316,321 + -0.5 316,321 + -0.3 316,326 - +1.2 316,339 - +0.1 316,345 + +0.1 316,347 + -2.8 316,347 + -1.1 316,347 + -0.2 316,347 + -1.4 316,348 - -0.7 316,348 - -1.6 316,348 - -0.1 316,381 + -2.0 316,408 - -3.7 316,427 + +1.8 316,428 - -0.9 316,476 - +1.1 316,601 + -0.5 316,602 - -0.7 316,642 + -0.2 316,687 + -0.5 316,691 - -2.7 316,940 - HMPREF1078_RS11860 0.15 -2.7 316,964 + HMPREF1078_RS11860 0.16 +0.3 316,965 - HMPREF1078_RS11860 0.16 +0.2 316,977 + HMPREF1078_RS11860 0.16 -3.1 317,063 + HMPREF1078_RS11860 0.21 +0.5 317,112 - HMPREF1078_RS11860 0.23 +0.1 317,242 + HMPREF1078_RS11860 0.29 +0.6 317,441 + HMPREF1078_RS11860 0.39 -0.1 317,519 - HMPREF1078_RS11860 0.43 +1.6 317,579 - HMPREF1078_RS11860 0.46 -0.1 317,579 - HMPREF1078_RS11860 0.46 -0.1 317,682 + HMPREF1078_RS11860 0.51 -2.2 317,683 - HMPREF1078_RS11860 0.51 +0.8 317,727 - HMPREF1078_RS11860 0.53 +0.6 317,917 + HMPREF1078_RS11860 0.62 +0.1 317,917 + HMPREF1078_RS11860 0.62 +2.1 317,918 - HMPREF1078_RS11860 0.62 -1.4 318,168 - HMPREF1078_RS11860 0.74 +0.9 318,199 + HMPREF1078_RS11860 0.76 +1.4 318,199 + HMPREF1078_RS11860 0.76 -2.7 318,347 - HMPREF1078_RS11860 0.83 -0.7 318,389 + HMPREF1078_RS11860 0.85 -0.2 318,390 - HMPREF1078_RS11860 0.85 -0.0 318,390 - HMPREF1078_RS11860 0.85 +0.1 318,410 - HMPREF1078_RS11860 0.86 -0.5 318,410 - HMPREF1078_RS11860 0.86 -1.9 318,470 + HMPREF1078_RS11860 0.89 +0.2 318,470 + HMPREF1078_RS11860 0.89 +0.4 318,470 + HMPREF1078_RS11860 0.89 +0.7 318,471 - HMPREF1078_RS11860 0.89 +1.0 318,512 + +1.4 318,563 + +1.7 318,670 - -0.7 318,675 + +1.1 318,684 + +0.5 318,685 - -0.8 318,697 + -0.9 318,697 + -0.7 318,697 + +0.6 318,702 + -0.2 318,771 - +1.1 318,802 - -0.9 318,807 - -1.5 318,809 + +0.1 318,809 + +1.3 318,810 - +1.4 318,814 - -2.0 318,855 - +1.8 318,884 + +1.6 318,884 + +1.1 318,885 - -0.5 318,886 + -1.2 318,886 + +1.4 318,887 - +0.2 318,891 + +0.5 318,895 - -0.3 318,900 + +0.9 318,910 + -0.7 318,911 - +3.1 318,956 - -0.9 318,967 + +0.5 319,072 - HMPREF1078_RS11865 0.16 +0.3 319,072 - HMPREF1078_RS11865 0.16 -0.3 319,072 - HMPREF1078_RS11865 0.16 -0.5 319,090 - HMPREF1078_RS11865 0.17 -0.3 319,090 - HMPREF1078_RS11865 0.17 -0.9 319,168 - HMPREF1078_RS11865 0.22 -2.0 319,200 + HMPREF1078_RS11865 0.24 +0.4 319,200 - HMPREF1078_RS11865 0.24 +0.4 319,287 + HMPREF1078_RS11865 0.29 -2.7 319,288 - HMPREF1078_RS11865 0.30 +0.2 319,292 - HMPREF1078_RS11865 0.30 -2.2 319,338 + HMPREF1078_RS11865 0.33 -1.4 319,342 + HMPREF1078_RS11865 0.33 +0.6 319,342 + HMPREF1078_RS11865 0.33 +1.1 319,342 + HMPREF1078_RS11865 0.33 +1.1 319,342 + HMPREF1078_RS11865 0.33 +0.2 319,342 + HMPREF1078_RS11865 0.33 +1.7 319,342 + HMPREF1078_RS11865 0.33 -0.5 319,343 - HMPREF1078_RS11865 0.33 -0.1 319,343 - HMPREF1078_RS11865 0.33 +0.8 319,343 - HMPREF1078_RS11865 0.33 -0.6 319,343 - HMPREF1078_RS11865 0.33 -1.3 319,343 - HMPREF1078_RS11865 0.33 -3.2 319,417 - HMPREF1078_RS11865 0.38 -2.4 319,541 - HMPREF1078_RS11865 0.46 -0.5 319,645 + HMPREF1078_RS11865 0.53 +0.8 319,645 + HMPREF1078_RS11865 0.53 -2.5 319,645 + HMPREF1078_RS11865 0.53 +0.4 319,645 + HMPREF1078_RS11865 0.53 +0.5 319,645 + HMPREF1078_RS11865 0.53 -0.2 319,646 - HMPREF1078_RS11865 0.53 +0.1 319,646 - HMPREF1078_RS11865 0.53 -2.2 319,646 - HMPREF1078_RS11865 0.53 +0.6 319,646 - HMPREF1078_RS11865 0.53 -2.1 319,648 - HMPREF1078_RS11865 0.53 -3.6
Or see this region's nucleotide sequence