Experiment: D-Glucose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS10390 and HMPREF1078_RS10395 overlap by 4 nucleotides HMPREF1078_RS10395 and HMPREF1078_RS10400 are separated by 108 nucleotides
HMPREF1078_RS10390: HMPREF1078_RS10390 - cofactor-independent phosphoglycerate mutase, at 711,950 to 713,152
_RS10390
HMPREF1078_RS10395: HMPREF1078_RS10395 - threonine synthase, at 713,149 to 714,462
_RS10395
HMPREF1078_RS10400: HMPREF1078_RS10400 - DUF4434 domain-containing protein, at 714,571 to 715,671
_RS10400
Position (kb) 713
714
715 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 712.203 kb on - strand, within HMPREF1078_RS10390 at 712.288 kb on + strand, within HMPREF1078_RS10390 at 712.326 kb on + strand, within HMPREF1078_RS10390 at 712.353 kb on + strand, within HMPREF1078_RS10390 at 712.361 kb on + strand, within HMPREF1078_RS10390 at 712.447 kb on - strand, within HMPREF1078_RS10390 at 712.605 kb on + strand, within HMPREF1078_RS10390 at 712.605 kb on + strand, within HMPREF1078_RS10390 at 712.606 kb on - strand, within HMPREF1078_RS10390 at 712.658 kb on + strand, within HMPREF1078_RS10390 at 712.659 kb on - strand, within HMPREF1078_RS10390 at 712.710 kb on + strand, within HMPREF1078_RS10390 at 712.735 kb on - strand, within HMPREF1078_RS10390 at 712.763 kb on + strand, within HMPREF1078_RS10390 at 712.775 kb on + strand, within HMPREF1078_RS10390 at 712.775 kb on + strand, within HMPREF1078_RS10390 at 712.776 kb on - strand, within HMPREF1078_RS10390 at 712.830 kb on - strand, within HMPREF1078_RS10390 at 712.875 kb on + strand, within HMPREF1078_RS10390 at 712.875 kb on + strand, within HMPREF1078_RS10390 at 712.875 kb on + strand, within HMPREF1078_RS10390 at 713.008 kb on + strand, within HMPREF1078_RS10390 at 713.009 kb on - strand, within HMPREF1078_RS10390 at 713.014 kb on + strand, within HMPREF1078_RS10390 at 713.015 kb on - strand, within HMPREF1078_RS10390 at 713.015 kb on - strand, within HMPREF1078_RS10390 at 713.015 kb on - strand, within HMPREF1078_RS10390 at 713.038 kb on + strand at 713.038 kb on + strand at 713.042 kb on + strand at 713.042 kb on + strand at 713.116 kb on - strand at 713.116 kb on - strand at 713.116 kb on - strand at 713.116 kb on - strand at 713.119 kb on - strand at 713.119 kb on - strand at 713.156 kb on - strand at 713.159 kb on - strand at 713.234 kb on + strand at 713.235 kb on - strand at 713.235 kb on - strand at 713.236 kb on + strand at 713.236 kb on + strand at 713.237 kb on - strand at 713.238 kb on + strand at 713.238 kb on + strand at 713.238 kb on + strand at 713.239 kb on - strand at 713.239 kb on - strand at 713.239 kb on - strand at 713.239 kb on - strand at 713.239 kb on - strand at 713.239 kb on - strand at 713.239 kb on - strand at 713.250 kb on + strand at 713.250 kb on + strand at 713.251 kb on - strand at 713.348 kb on + strand, within HMPREF1078_RS10395 at 713.348 kb on + strand, within HMPREF1078_RS10395 at 713.348 kb on + strand, within HMPREF1078_RS10395 at 713.349 kb on - strand, within HMPREF1078_RS10395 at 713.349 kb on - strand, within HMPREF1078_RS10395 at 713.349 kb on - strand, within HMPREF1078_RS10395 at 713.349 kb on - strand, within HMPREF1078_RS10395 at 713.415 kb on - strand, within HMPREF1078_RS10395 at 713.415 kb on - strand, within HMPREF1078_RS10395 at 713.425 kb on - strand, within HMPREF1078_RS10395 at 713.425 kb on - strand, within HMPREF1078_RS10395 at 713.425 kb on - strand, within HMPREF1078_RS10395 at 713.429 kb on - strand, within HMPREF1078_RS10395 at 713.429 kb on - strand, within HMPREF1078_RS10395 at 713.506 kb on + strand, within HMPREF1078_RS10395 at 713.506 kb on + strand, within HMPREF1078_RS10395 at 713.506 kb on + strand, within HMPREF1078_RS10395 at 713.507 kb on - strand, within HMPREF1078_RS10395 at 713.515 kb on - strand, within HMPREF1078_RS10395 at 713.607 kb on + strand, within HMPREF1078_RS10395 at 713.607 kb on + strand, within HMPREF1078_RS10395 at 713.617 kb on + strand, within HMPREF1078_RS10395 at 713.618 kb on - strand, within HMPREF1078_RS10395 at 713.618 kb on - strand, within HMPREF1078_RS10395 at 713.618 kb on - strand, within HMPREF1078_RS10395 at 713.618 kb on - strand, within HMPREF1078_RS10395 at 713.618 kb on - strand, within HMPREF1078_RS10395 at 713.618 kb on - strand, within HMPREF1078_RS10395 at 713.618 kb on - strand, within HMPREF1078_RS10395 at 713.642 kb on + strand, within HMPREF1078_RS10395 at 713.670 kb on + strand, within HMPREF1078_RS10395 at 713.702 kb on + strand, within HMPREF1078_RS10395 at 713.748 kb on + strand, within HMPREF1078_RS10395 at 713.831 kb on - strand, within HMPREF1078_RS10395 at 713.833 kb on + strand, within HMPREF1078_RS10395 at 713.834 kb on - strand, within HMPREF1078_RS10395 at 713.845 kb on + strand, within HMPREF1078_RS10395 at 713.859 kb on + strand, within HMPREF1078_RS10395 at 713.885 kb on + strand, within HMPREF1078_RS10395 at 713.886 kb on - strand, within HMPREF1078_RS10395 at 713.886 kb on - strand, within HMPREF1078_RS10395 at 713.886 kb on - strand, within HMPREF1078_RS10395 at 713.916 kb on + strand, within HMPREF1078_RS10395 at 714.022 kb on + strand, within HMPREF1078_RS10395 at 714.106 kb on + strand, within HMPREF1078_RS10395 at 714.107 kb on - strand, within HMPREF1078_RS10395 at 714.203 kb on - strand, within HMPREF1078_RS10395 at 714.218 kb on - strand, within HMPREF1078_RS10395 at 714.224 kb on + strand, within HMPREF1078_RS10395 at 714.377 kb on + strand at 714.410 kb on + strand at 714.411 kb on - strand at 714.445 kb on + strand at 714.446 kb on - strand at 714.446 kb on - strand at 714.460 kb on + strand at 714.460 kb on + strand at 714.461 kb on - strand at 714.461 kb on - strand at 714.482 kb on - strand at 714.568 kb on + strand at 714.568 kb on + strand at 714.569 kb on - strand at 714.594 kb on + strand at 714.595 kb on - strand at 714.595 kb on - strand at 714.597 kb on - strand at 714.605 kb on + strand at 714.605 kb on + strand at 714.605 kb on + strand at 714.606 kb on - strand at 714.606 kb on - strand at 714.797 kb on + strand, within HMPREF1078_RS10400 at 714.797 kb on + strand, within HMPREF1078_RS10400 at 714.797 kb on + strand, within HMPREF1078_RS10400 at 714.797 kb on + strand, within HMPREF1078_RS10400 at 714.797 kb on + strand, within HMPREF1078_RS10400 at 714.798 kb on - strand, within HMPREF1078_RS10400 at 714.802 kb on - strand, within HMPREF1078_RS10400 at 714.848 kb on + strand, within HMPREF1078_RS10400 at 715.115 kb on + strand, within HMPREF1078_RS10400 at 715.116 kb on - strand, within HMPREF1078_RS10400 at 715.134 kb on + strand, within HMPREF1078_RS10400 at 715.135 kb on - strand, within HMPREF1078_RS10400 at 715.146 kb on - strand, within HMPREF1078_RS10400 at 715.146 kb on - strand, within HMPREF1078_RS10400 at 715.172 kb on + strand, within HMPREF1078_RS10400 at 715.173 kb on - strand, within HMPREF1078_RS10400 at 715.232 kb on + strand, within HMPREF1078_RS10400 at 715.233 kb on - strand, within HMPREF1078_RS10400 at 715.280 kb on + strand, within HMPREF1078_RS10400 at 715.280 kb on + strand, within HMPREF1078_RS10400 at 715.280 kb on + strand, within HMPREF1078_RS10400 at 715.281 kb on - strand, within HMPREF1078_RS10400 at 715.308 kb on + strand, within HMPREF1078_RS10400 at 715.308 kb on + strand, within HMPREF1078_RS10400 at 715.308 kb on + strand, within HMPREF1078_RS10400 at 715.308 kb on + strand, within HMPREF1078_RS10400 at 715.309 kb on - strand, within HMPREF1078_RS10400 at 715.309 kb on - strand, within HMPREF1078_RS10400 at 715.309 kb on - strand, within HMPREF1078_RS10400 at 715.309 kb on - strand, within HMPREF1078_RS10400 at 715.310 kb on + strand, within HMPREF1078_RS10400 at 715.311 kb on - strand, within HMPREF1078_RS10400 at 715.311 kb on - strand, within HMPREF1078_RS10400 at 715.384 kb on + strand, within HMPREF1078_RS10400 at 715.410 kb on + strand, within HMPREF1078_RS10400 at 715.411 kb on - strand, within HMPREF1078_RS10400 at 715.412 kb on + strand, within HMPREF1078_RS10400 at 715.412 kb on + strand, within HMPREF1078_RS10400 at 715.412 kb on + strand, within HMPREF1078_RS10400
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose 10 mg/mL (C) remove 712,203 - HMPREF1078_RS10390 0.21 -2.2 712,288 + HMPREF1078_RS10390 0.28 -1.6 712,326 + HMPREF1078_RS10390 0.31 -4.5 712,353 + HMPREF1078_RS10390 0.33 -0.9 712,361 + HMPREF1078_RS10390 0.34 -3.4 712,447 - HMPREF1078_RS10390 0.41 -3.8 712,605 + HMPREF1078_RS10390 0.54 -1.6 712,605 + HMPREF1078_RS10390 0.54 -0.9 712,606 - HMPREF1078_RS10390 0.55 -2.6 712,658 + HMPREF1078_RS10390 0.59 -4.4 712,659 - HMPREF1078_RS10390 0.59 -1.9 712,710 + HMPREF1078_RS10390 0.63 -2.0 712,735 - HMPREF1078_RS10390 0.65 -3.7 712,763 + HMPREF1078_RS10390 0.68 -3.3 712,775 + HMPREF1078_RS10390 0.69 -3.0 712,775 + HMPREF1078_RS10390 0.69 -3.5 712,776 - HMPREF1078_RS10390 0.69 -0.3 712,830 - HMPREF1078_RS10390 0.73 -2.9 712,875 + HMPREF1078_RS10390 0.77 -2.4 712,875 + HMPREF1078_RS10390 0.77 -3.0 712,875 + HMPREF1078_RS10390 0.77 -2.5 713,008 + HMPREF1078_RS10390 0.88 -3.5 713,009 - HMPREF1078_RS10390 0.88 -2.9 713,014 + HMPREF1078_RS10390 0.88 -4.2 713,015 - HMPREF1078_RS10390 0.89 -3.8 713,015 - HMPREF1078_RS10390 0.89 +0.2 713,015 - HMPREF1078_RS10390 0.89 -1.2 713,038 + -3.1 713,038 + -3.0 713,042 + -3.9 713,042 + -3.3 713,116 - -1.7 713,116 - -4.0 713,116 - -1.2 713,116 - -2.4 713,119 - -0.3 713,119 - -2.5 713,156 - -4.1 713,159 - -1.4 713,234 + -2.2 713,235 - -1.5 713,235 - +0.2 713,236 + -1.5 713,236 + -2.4 713,237 - -1.7 713,238 + -1.9 713,238 + -1.3 713,238 + -2.7 713,239 - -1.0 713,239 - -2.9 713,239 - -3.4 713,239 - -3.9 713,239 - -1.9 713,239 - -3.6 713,239 - +0.5 713,250 + -4.0 713,250 + -4.1 713,251 - -1.3 713,348 + HMPREF1078_RS10395 0.15 -1.6 713,348 + HMPREF1078_RS10395 0.15 -5.5 713,348 + HMPREF1078_RS10395 0.15 -3.4 713,349 - HMPREF1078_RS10395 0.15 -0.7 713,349 - HMPREF1078_RS10395 0.15 -5.0 713,349 - HMPREF1078_RS10395 0.15 -1.8 713,349 - HMPREF1078_RS10395 0.15 -3.1 713,415 - HMPREF1078_RS10395 0.20 -3.3 713,415 - HMPREF1078_RS10395 0.20 -4.5 713,425 - HMPREF1078_RS10395 0.21 -1.2 713,425 - HMPREF1078_RS10395 0.21 -3.5 713,425 - HMPREF1078_RS10395 0.21 -1.4 713,429 - HMPREF1078_RS10395 0.21 -2.2 713,429 - HMPREF1078_RS10395 0.21 -2.7 713,506 + HMPREF1078_RS10395 0.27 -1.8 713,506 + HMPREF1078_RS10395 0.27 -3.7 713,506 + HMPREF1078_RS10395 0.27 -1.7 713,507 - HMPREF1078_RS10395 0.27 -0.8 713,515 - HMPREF1078_RS10395 0.28 -2.6 713,607 + HMPREF1078_RS10395 0.35 -1.7 713,607 + HMPREF1078_RS10395 0.35 -3.8 713,617 + HMPREF1078_RS10395 0.36 -3.8 713,618 - HMPREF1078_RS10395 0.36 -4.1 713,618 - HMPREF1078_RS10395 0.36 -1.3 713,618 - HMPREF1078_RS10395 0.36 -3.4 713,618 - HMPREF1078_RS10395 0.36 -0.1 713,618 - HMPREF1078_RS10395 0.36 -0.3 713,618 - HMPREF1078_RS10395 0.36 -0.9 713,618 - HMPREF1078_RS10395 0.36 -2.9 713,642 + HMPREF1078_RS10395 0.38 -1.3 713,670 + HMPREF1078_RS10395 0.40 -3.0 713,702 + HMPREF1078_RS10395 0.42 -4.1 713,748 + HMPREF1078_RS10395 0.46 -1.9 713,831 - HMPREF1078_RS10395 0.52 -0.3 713,833 + HMPREF1078_RS10395 0.52 -3.4 713,834 - HMPREF1078_RS10395 0.52 -2.8 713,845 + HMPREF1078_RS10395 0.53 -3.9 713,859 + HMPREF1078_RS10395 0.54 -2.9 713,885 + HMPREF1078_RS10395 0.56 -5.1 713,886 - HMPREF1078_RS10395 0.56 -3.8 713,886 - HMPREF1078_RS10395 0.56 -2.2 713,886 - HMPREF1078_RS10395 0.56 -2.1 713,916 + HMPREF1078_RS10395 0.58 -3.2 714,022 + HMPREF1078_RS10395 0.66 -1.3 714,106 + HMPREF1078_RS10395 0.73 -3.5 714,107 - HMPREF1078_RS10395 0.73 -1.6 714,203 - HMPREF1078_RS10395 0.80 -4.2 714,218 - HMPREF1078_RS10395 0.81 -3.7 714,224 + HMPREF1078_RS10395 0.82 -4.3 714,377 + -3.7 714,410 + -4.6 714,411 - -1.9 714,445 + -3.9 714,446 - -1.2 714,446 - -1.9 714,460 + +1.0 714,460 + -1.2 714,461 - -0.8 714,461 - -0.6 714,482 - -1.9 714,568 + -0.8 714,568 + +2.1 714,569 - +0.2 714,594 + +0.9 714,595 - -0.8 714,595 - +0.2 714,597 - +1.2 714,605 + +2.0 714,605 + -1.4 714,605 + +0.4 714,606 - -1.5 714,606 - +1.1 714,797 + HMPREF1078_RS10400 0.21 -0.7 714,797 + HMPREF1078_RS10400 0.21 +1.1 714,797 + HMPREF1078_RS10400 0.21 +0.5 714,797 + HMPREF1078_RS10400 0.21 +0.4 714,797 + HMPREF1078_RS10400 0.21 -0.6 714,798 - HMPREF1078_RS10400 0.21 -0.3 714,802 - HMPREF1078_RS10400 0.21 -0.3 714,848 + HMPREF1078_RS10400 0.25 +0.6 715,115 + HMPREF1078_RS10400 0.49 -0.9 715,116 - HMPREF1078_RS10400 0.50 -0.5 715,134 + HMPREF1078_RS10400 0.51 +0.1 715,135 - HMPREF1078_RS10400 0.51 -1.1 715,146 - HMPREF1078_RS10400 0.52 +0.1 715,146 - HMPREF1078_RS10400 0.52 +1.4 715,172 + HMPREF1078_RS10400 0.55 +0.5 715,173 - HMPREF1078_RS10400 0.55 +0.7 715,232 + HMPREF1078_RS10400 0.60 +0.5 715,233 - HMPREF1078_RS10400 0.60 +1.2 715,280 + HMPREF1078_RS10400 0.64 +0.8 715,280 + HMPREF1078_RS10400 0.64 +1.8 715,280 + HMPREF1078_RS10400 0.64 +1.4 715,281 - HMPREF1078_RS10400 0.64 -2.6 715,308 + HMPREF1078_RS10400 0.67 -0.4 715,308 + HMPREF1078_RS10400 0.67 -1.2 715,308 + HMPREF1078_RS10400 0.67 +0.1 715,308 + HMPREF1078_RS10400 0.67 -2.2 715,309 - HMPREF1078_RS10400 0.67 +0.8 715,309 - HMPREF1078_RS10400 0.67 -0.8 715,309 - HMPREF1078_RS10400 0.67 -1.6 715,309 - HMPREF1078_RS10400 0.67 -1.2 715,310 + HMPREF1078_RS10400 0.67 +0.5 715,311 - HMPREF1078_RS10400 0.67 +0.9 715,311 - HMPREF1078_RS10400 0.67 -1.1 715,384 + HMPREF1078_RS10400 0.74 +1.1 715,410 + HMPREF1078_RS10400 0.76 -0.1 715,411 - HMPREF1078_RS10400 0.76 +0.6 715,412 + HMPREF1078_RS10400 0.76 +0.9 715,412 + HMPREF1078_RS10400 0.76 +1.0 715,412 + HMPREF1078_RS10400 0.76 -0.6
Or see this region's nucleotide sequence