Experiment: D-Glucose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS08195 and HMPREF1078_RS08200 are separated by 85 nucleotides HMPREF1078_RS08200 and HMPREF1078_RS08205 are separated by 67 nucleotides HMPREF1078_RS08205 and HMPREF1078_RS08210 are separated by 13 nucleotides
HMPREF1078_RS08195: HMPREF1078_RS08195 - RNA polymerase sigma factor, at 210,155 to 210,610
_RS08195
HMPREF1078_RS08200: HMPREF1078_RS08200 - Hsp20/alpha crystallin family protein, at 210,696 to 211,124
_RS08200
HMPREF1078_RS08205: HMPREF1078_RS08205 - 2,3-diphosphoglycerate-dependent phosphoglycerate mutase, at 211,192 to 211,941
_RS08205
HMPREF1078_RS08210: HMPREF1078_RS08210 - class I fructose-bisphosphate aldolase, at 211,955 to 213,004
_RS08210
Position (kb) 211
212 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 210.250 kb on - strand, within HMPREF1078_RS08195 at 210.259 kb on + strand, within HMPREF1078_RS08195 at 210.260 kb on - strand, within HMPREF1078_RS08195 at 210.348 kb on + strand, within HMPREF1078_RS08195 at 210.365 kb on + strand, within HMPREF1078_RS08195 at 210.366 kb on - strand, within HMPREF1078_RS08195 at 210.366 kb on - strand, within HMPREF1078_RS08195 at 210.371 kb on + strand, within HMPREF1078_RS08195 at 210.371 kb on + strand, within HMPREF1078_RS08195 at 210.432 kb on + strand, within HMPREF1078_RS08195 at 210.432 kb on + strand, within HMPREF1078_RS08195 at 210.432 kb on + strand, within HMPREF1078_RS08195 at 210.432 kb on + strand, within HMPREF1078_RS08195 at 210.433 kb on - strand, within HMPREF1078_RS08195 at 210.433 kb on - strand, within HMPREF1078_RS08195 at 210.469 kb on + strand, within HMPREF1078_RS08195 at 210.469 kb on + strand, within HMPREF1078_RS08195 at 210.476 kb on - strand, within HMPREF1078_RS08195 at 210.479 kb on - strand, within HMPREF1078_RS08195 at 210.481 kb on - strand, within HMPREF1078_RS08195 at 210.547 kb on - strand, within HMPREF1078_RS08195 at 210.547 kb on - strand, within HMPREF1078_RS08195 at 210.611 kb on + strand at 210.611 kb on + strand at 210.612 kb on - strand at 210.617 kb on + strand at 210.660 kb on + strand at 210.660 kb on + strand at 210.692 kb on + strand at 210.692 kb on + strand at 210.693 kb on - strand at 210.693 kb on - strand at 210.737 kb on + strand at 210.738 kb on - strand at 210.827 kb on + strand, within HMPREF1078_RS08200 at 210.828 kb on - strand, within HMPREF1078_RS08200 at 210.948 kb on + strand, within HMPREF1078_RS08200 at 210.949 kb on - strand, within HMPREF1078_RS08200 at 210.990 kb on + strand, within HMPREF1078_RS08200 at 210.991 kb on - strand, within HMPREF1078_RS08200 at 210.997 kb on + strand, within HMPREF1078_RS08200 at 210.997 kb on + strand, within HMPREF1078_RS08200 at 210.998 kb on - strand, within HMPREF1078_RS08200 at 210.998 kb on - strand, within HMPREF1078_RS08200 at 211.140 kb on - strand at 211.149 kb on + strand at 211.149 kb on + strand at 211.262 kb on + strand at 211.263 kb on - strand at 211.265 kb on + strand at 211.307 kb on + strand, within HMPREF1078_RS08205 at 211.307 kb on + strand, within HMPREF1078_RS08205 at 211.308 kb on - strand, within HMPREF1078_RS08205 at 211.308 kb on - strand, within HMPREF1078_RS08205 at 211.477 kb on - strand, within HMPREF1078_RS08205 at 211.479 kb on + strand, within HMPREF1078_RS08205 at 211.479 kb on + strand, within HMPREF1078_RS08205 at 211.593 kb on - strand, within HMPREF1078_RS08205 at 211.593 kb on - strand, within HMPREF1078_RS08205 at 211.612 kb on + strand, within HMPREF1078_RS08205 at 211.628 kb on + strand, within HMPREF1078_RS08205 at 211.628 kb on + strand, within HMPREF1078_RS08205 at 211.650 kb on + strand, within HMPREF1078_RS08205 at 211.650 kb on + strand, within HMPREF1078_RS08205 at 211.651 kb on - strand, within HMPREF1078_RS08205 at 211.722 kb on + strand, within HMPREF1078_RS08205 at 211.781 kb on + strand, within HMPREF1078_RS08205 at 211.781 kb on + strand, within HMPREF1078_RS08205 at 211.859 kb on - strand, within HMPREF1078_RS08205 at 211.881 kb on + strand at 211.904 kb on - strand at 211.921 kb on + strand at 211.925 kb on - strand at 211.938 kb on + strand at 211.945 kb on + strand at 211.985 kb on + strand at 211.985 kb on + strand at 211.985 kb on + strand at 211.986 kb on - strand at 211.986 kb on - strand at 211.986 kb on - strand at 212.045 kb on - strand at 212.168 kb on - strand, within HMPREF1078_RS08210 at 212.168 kb on - strand, within HMPREF1078_RS08210 at 212.169 kb on + strand, within HMPREF1078_RS08210 at 212.169 kb on + strand, within HMPREF1078_RS08210 at 212.170 kb on - strand, within HMPREF1078_RS08210 at 212.229 kb on + strand, within HMPREF1078_RS08210 at 212.233 kb on + strand, within HMPREF1078_RS08210 at 212.233 kb on + strand, within HMPREF1078_RS08210 at 212.233 kb on + strand, within HMPREF1078_RS08210 at 212.233 kb on + strand, within HMPREF1078_RS08210 at 212.233 kb on + strand, within HMPREF1078_RS08210 at 212.233 kb on + strand, within HMPREF1078_RS08210 at 212.233 kb on + strand, within HMPREF1078_RS08210 at 212.233 kb on + strand, within HMPREF1078_RS08210 at 212.234 kb on - strand, within HMPREF1078_RS08210 at 212.234 kb on - strand, within HMPREF1078_RS08210 at 212.234 kb on - strand, within HMPREF1078_RS08210 at 212.234 kb on - strand, within HMPREF1078_RS08210 at 212.234 kb on - strand, within HMPREF1078_RS08210 at 212.234 kb on - strand, within HMPREF1078_RS08210 at 212.234 kb on - strand, within HMPREF1078_RS08210 at 212.330 kb on - strand, within HMPREF1078_RS08210 at 212.368 kb on - strand, within HMPREF1078_RS08210 at 212.420 kb on - strand, within HMPREF1078_RS08210 at 212.445 kb on + strand, within HMPREF1078_RS08210 at 212.446 kb on - strand, within HMPREF1078_RS08210 at 212.523 kb on - strand, within HMPREF1078_RS08210 at 212.564 kb on + strand, within HMPREF1078_RS08210 at 212.564 kb on + strand, within HMPREF1078_RS08210 at 212.574 kb on + strand, within HMPREF1078_RS08210 at 212.602 kb on + strand, within HMPREF1078_RS08210 at 212.620 kb on + strand, within HMPREF1078_RS08210 at 212.620 kb on + strand, within HMPREF1078_RS08210 at 212.627 kb on + strand, within HMPREF1078_RS08210 at 212.628 kb on - strand, within HMPREF1078_RS08210 at 212.628 kb on - strand, within HMPREF1078_RS08210 at 212.640 kb on + strand, within HMPREF1078_RS08210 at 212.641 kb on - strand, within HMPREF1078_RS08210 at 212.641 kb on - strand, within HMPREF1078_RS08210 at 212.689 kb on + strand, within HMPREF1078_RS08210 at 212.715 kb on - strand, within HMPREF1078_RS08210 at 212.732 kb on + strand, within HMPREF1078_RS08210 at 212.736 kb on + strand, within HMPREF1078_RS08210 at 212.736 kb on + strand, within HMPREF1078_RS08210 at 212.804 kb on + strand, within HMPREF1078_RS08210 at 212.808 kb on + strand, within HMPREF1078_RS08210 at 212.808 kb on + strand, within HMPREF1078_RS08210 at 212.809 kb on - strand, within HMPREF1078_RS08210 at 212.809 kb on - strand, within HMPREF1078_RS08210 at 212.838 kb on + strand, within HMPREF1078_RS08210 at 212.864 kb on - strand, within HMPREF1078_RS08210 at 212.864 kb on - strand, within HMPREF1078_RS08210 at 212.892 kb on - strand, within HMPREF1078_RS08210 at 212.892 kb on - strand, within HMPREF1078_RS08210 at 212.896 kb on + strand, within HMPREF1078_RS08210 at 212.896 kb on + strand, within HMPREF1078_RS08210 at 212.897 kb on - strand, within HMPREF1078_RS08210 at 212.897 kb on - strand, within HMPREF1078_RS08210 at 212.897 kb on - strand, within HMPREF1078_RS08210 at 212.897 kb on - strand, within HMPREF1078_RS08210 at 212.900 kb on + strand at 212.900 kb on + strand at 212.900 kb on + strand at 212.901 kb on - strand at 212.901 kb on - strand at 212.901 kb on - strand at 212.921 kb on - strand at 212.926 kb on + strand at 212.926 kb on + strand at 212.926 kb on + strand at 212.927 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose 10 mg/mL (C) remove 210,250 - HMPREF1078_RS08195 0.21 +1.2 210,259 + HMPREF1078_RS08195 0.23 +0.9 210,260 - HMPREF1078_RS08195 0.23 +1.5 210,348 + HMPREF1078_RS08195 0.42 -1.3 210,365 + HMPREF1078_RS08195 0.46 +0.1 210,366 - HMPREF1078_RS08195 0.46 +0.9 210,366 - HMPREF1078_RS08195 0.46 -0.0 210,371 + HMPREF1078_RS08195 0.47 -0.9 210,371 + HMPREF1078_RS08195 0.47 +1.2 210,432 + HMPREF1078_RS08195 0.61 -1.1 210,432 + HMPREF1078_RS08195 0.61 +1.4 210,432 + HMPREF1078_RS08195 0.61 -0.2 210,432 + HMPREF1078_RS08195 0.61 +1.6 210,433 - HMPREF1078_RS08195 0.61 -0.9 210,433 - HMPREF1078_RS08195 0.61 -1.5 210,469 + HMPREF1078_RS08195 0.69 +0.8 210,469 + HMPREF1078_RS08195 0.69 -1.2 210,476 - HMPREF1078_RS08195 0.70 +1.1 210,479 - HMPREF1078_RS08195 0.71 -0.8 210,481 - HMPREF1078_RS08195 0.71 +1.9 210,547 - HMPREF1078_RS08195 0.86 +0.8 210,547 - HMPREF1078_RS08195 0.86 -1.8 210,611 + -1.9 210,611 + +1.5 210,612 - -2.4 210,617 + -0.5 210,660 + -2.0 210,660 + -1.9 210,692 + -0.7 210,692 + -0.8 210,693 - -0.7 210,693 - +2.3 210,737 + +0.4 210,738 - -0.5 210,827 + HMPREF1078_RS08200 0.31 -0.9 210,828 - HMPREF1078_RS08200 0.31 -0.1 210,948 + HMPREF1078_RS08200 0.59 -0.5 210,949 - HMPREF1078_RS08200 0.59 +0.6 210,990 + HMPREF1078_RS08200 0.69 +0.2 210,991 - HMPREF1078_RS08200 0.69 -0.8 210,997 + HMPREF1078_RS08200 0.70 -0.3 210,997 + HMPREF1078_RS08200 0.70 +0.3 210,998 - HMPREF1078_RS08200 0.70 +1.1 210,998 - HMPREF1078_RS08200 0.70 -0.2 211,140 - -0.8 211,149 + +1.6 211,149 + +1.7 211,262 + +1.7 211,263 - +0.2 211,265 + +0.6 211,307 + HMPREF1078_RS08205 0.15 +0.8 211,307 + HMPREF1078_RS08205 0.15 +0.5 211,308 - HMPREF1078_RS08205 0.15 +0.8 211,308 - HMPREF1078_RS08205 0.15 +0.9 211,477 - HMPREF1078_RS08205 0.38 +0.4 211,479 + HMPREF1078_RS08205 0.38 +1.4 211,479 + HMPREF1078_RS08205 0.38 -0.3 211,593 - HMPREF1078_RS08205 0.53 +1.0 211,593 - HMPREF1078_RS08205 0.53 +2.9 211,612 + HMPREF1078_RS08205 0.56 +0.6 211,628 + HMPREF1078_RS08205 0.58 +1.3 211,628 + HMPREF1078_RS08205 0.58 -0.3 211,650 + HMPREF1078_RS08205 0.61 +1.4 211,650 + HMPREF1078_RS08205 0.61 -0.0 211,651 - HMPREF1078_RS08205 0.61 +1.6 211,722 + HMPREF1078_RS08205 0.71 -0.7 211,781 + HMPREF1078_RS08205 0.79 +0.3 211,781 + HMPREF1078_RS08205 0.79 -2.2 211,859 - HMPREF1078_RS08205 0.89 -0.3 211,881 + +0.6 211,904 - -0.0 211,921 + +0.2 211,925 - +0.1 211,938 + +0.6 211,945 + +1.0 211,985 + -0.2 211,985 + -2.5 211,985 + -0.9 211,986 - +1.7 211,986 - +0.9 211,986 - +0.7 212,045 - +1.6 212,168 - HMPREF1078_RS08210 0.20 +0.6 212,168 - HMPREF1078_RS08210 0.20 -2.4 212,169 + HMPREF1078_RS08210 0.20 -1.5 212,169 + HMPREF1078_RS08210 0.20 +0.4 212,170 - HMPREF1078_RS08210 0.20 +1.4 212,229 + HMPREF1078_RS08210 0.26 +0.8 212,233 + HMPREF1078_RS08210 0.26 +0.8 212,233 + HMPREF1078_RS08210 0.26 +0.4 212,233 + HMPREF1078_RS08210 0.26 -1.2 212,233 + HMPREF1078_RS08210 0.26 -2.3 212,233 + HMPREF1078_RS08210 0.26 -0.1 212,233 + HMPREF1078_RS08210 0.26 +0.7 212,233 + HMPREF1078_RS08210 0.26 +0.8 212,233 + HMPREF1078_RS08210 0.26 -0.5 212,234 - HMPREF1078_RS08210 0.27 +0.9 212,234 - HMPREF1078_RS08210 0.27 +0.1 212,234 - HMPREF1078_RS08210 0.27 +1.3 212,234 - HMPREF1078_RS08210 0.27 -1.6 212,234 - HMPREF1078_RS08210 0.27 +0.7 212,234 - HMPREF1078_RS08210 0.27 -0.6 212,234 - HMPREF1078_RS08210 0.27 -1.9 212,330 - HMPREF1078_RS08210 0.36 -0.0 212,368 - HMPREF1078_RS08210 0.39 +0.2 212,420 - HMPREF1078_RS08210 0.44 -2.6 212,445 + HMPREF1078_RS08210 0.47 -1.8 212,446 - HMPREF1078_RS08210 0.47 -0.1 212,523 - HMPREF1078_RS08210 0.54 -0.2 212,564 + HMPREF1078_RS08210 0.58 +1.2 212,564 + HMPREF1078_RS08210 0.58 -2.8 212,574 + HMPREF1078_RS08210 0.59 -0.9 212,602 + HMPREF1078_RS08210 0.62 -0.2 212,620 + HMPREF1078_RS08210 0.63 -2.9 212,620 + HMPREF1078_RS08210 0.63 +0.1 212,627 + HMPREF1078_RS08210 0.64 +0.5 212,628 - HMPREF1078_RS08210 0.64 -0.4 212,628 - HMPREF1078_RS08210 0.64 -0.1 212,640 + HMPREF1078_RS08210 0.65 -0.4 212,641 - HMPREF1078_RS08210 0.65 +1.7 212,641 - HMPREF1078_RS08210 0.65 +1.3 212,689 + HMPREF1078_RS08210 0.70 -2.1 212,715 - HMPREF1078_RS08210 0.72 +0.8 212,732 + HMPREF1078_RS08210 0.74 +1.3 212,736 + HMPREF1078_RS08210 0.74 -3.2 212,736 + HMPREF1078_RS08210 0.74 +0.2 212,804 + HMPREF1078_RS08210 0.81 +0.8 212,808 + HMPREF1078_RS08210 0.81 -1.1 212,808 + HMPREF1078_RS08210 0.81 -2.5 212,809 - HMPREF1078_RS08210 0.81 +2.4 212,809 - HMPREF1078_RS08210 0.81 +0.7 212,838 + HMPREF1078_RS08210 0.84 +0.6 212,864 - HMPREF1078_RS08210 0.87 +0.2 212,864 - HMPREF1078_RS08210 0.87 +1.0 212,892 - HMPREF1078_RS08210 0.89 +0.3 212,892 - HMPREF1078_RS08210 0.89 +0.3 212,896 + HMPREF1078_RS08210 0.90 -2.2 212,896 + HMPREF1078_RS08210 0.90 -0.3 212,897 - HMPREF1078_RS08210 0.90 -1.9 212,897 - HMPREF1078_RS08210 0.90 +0.7 212,897 - HMPREF1078_RS08210 0.90 +0.0 212,897 - HMPREF1078_RS08210 0.90 -0.5 212,900 + +0.5 212,900 + -1.9 212,900 + -1.2 212,901 - +0.2 212,901 - +0.6 212,901 - +0.5 212,921 - +0.4 212,926 + -2.2 212,926 + -2.4 212,926 + +0.5 212,927 - -0.0
Or see this region's nucleotide sequence