Experiment: D-Glucose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS06820 and HMPREF1078_RS06825 are separated by 68 nucleotides HMPREF1078_RS06825 and HMPREF1078_RS06830 are separated by 203 nucleotides HMPREF1078_RS06830 and HMPREF1078_RS06835 are separated by 4 nucleotides
HMPREF1078_RS06820: HMPREF1078_RS06820 - DUF5036 family protein, at 768,417 to 769,130
_RS06820
HMPREF1078_RS06825: HMPREF1078_RS06825 - helix-turn-helix domain-containing protein, at 769,199 to 769,645
_RS06825
HMPREF1078_RS06830: HMPREF1078_RS06830 - S28 family serine protease, at 769,849 to 771,153
_RS06830
HMPREF1078_RS06835: HMPREF1078_RS06835 - tRNA epoxyqueuosine(34) reductase QueG, at 771,158 to 772,165
_RS06835
Position (kb) 769
770
771
772 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 768.970 kb on + strand, within HMPREF1078_RS06820 at 768.970 kb on + strand, within HMPREF1078_RS06820 at 768.971 kb on - strand, within HMPREF1078_RS06820 at 768.971 kb on - strand, within HMPREF1078_RS06820 at 768.971 kb on - strand, within HMPREF1078_RS06820 at 768.971 kb on - strand, within HMPREF1078_RS06820 at 769.029 kb on - strand, within HMPREF1078_RS06820 at 769.145 kb on + strand at 769.151 kb on - strand at 769.179 kb on - strand at 769.182 kb on + strand at 769.200 kb on + strand at 769.215 kb on + strand at 769.242 kb on - strand at 769.242 kb on - strand at 769.388 kb on - strand, within HMPREF1078_RS06825 at 769.477 kb on + strand, within HMPREF1078_RS06825 at 769.477 kb on + strand, within HMPREF1078_RS06825 at 769.478 kb on - strand, within HMPREF1078_RS06825 at 769.480 kb on - strand, within HMPREF1078_RS06825 at 769.480 kb on - strand, within HMPREF1078_RS06825 at 769.603 kb on + strand at 769.603 kb on + strand at 769.603 kb on + strand at 769.603 kb on + strand at 769.604 kb on - strand at 769.609 kb on + strand at 769.623 kb on + strand at 769.623 kb on + strand at 769.624 kb on - strand at 769.625 kb on + strand at 769.626 kb on - strand at 769.633 kb on - strand at 769.655 kb on + strand at 769.655 kb on + strand at 769.668 kb on - strand at 769.670 kb on - strand at 769.670 kb on - strand at 769.670 kb on - strand at 769.677 kb on - strand at 769.709 kb on - strand at 769.746 kb on + strand at 769.762 kb on - strand at 769.771 kb on - strand at 769.800 kb on - strand at 769.802 kb on - strand at 769.831 kb on - strand at 769.883 kb on - strand at 770.022 kb on + strand, within HMPREF1078_RS06830 at 770.023 kb on - strand, within HMPREF1078_RS06830 at 770.023 kb on - strand, within HMPREF1078_RS06830 at 770.023 kb on - strand, within HMPREF1078_RS06830 at 770.232 kb on + strand, within HMPREF1078_RS06830 at 770.255 kb on + strand, within HMPREF1078_RS06830 at 770.285 kb on + strand, within HMPREF1078_RS06830 at 770.364 kb on - strand, within HMPREF1078_RS06830 at 770.600 kb on - strand, within HMPREF1078_RS06830 at 770.624 kb on + strand, within HMPREF1078_RS06830 at 770.681 kb on + strand, within HMPREF1078_RS06830 at 770.681 kb on + strand, within HMPREF1078_RS06830 at 770.681 kb on + strand, within HMPREF1078_RS06830 at 770.682 kb on - strand, within HMPREF1078_RS06830 at 770.682 kb on - strand, within HMPREF1078_RS06830 at 770.710 kb on - strand, within HMPREF1078_RS06830 at 770.783 kb on + strand, within HMPREF1078_RS06830 at 770.858 kb on + strand, within HMPREF1078_RS06830 at 770.858 kb on + strand, within HMPREF1078_RS06830 at 770.858 kb on + strand, within HMPREF1078_RS06830 at 770.859 kb on - strand, within HMPREF1078_RS06830 at 770.871 kb on - strand, within HMPREF1078_RS06830 at 770.959 kb on - strand, within HMPREF1078_RS06830 at 771.002 kb on + strand, within HMPREF1078_RS06830 at 771.003 kb on - strand, within HMPREF1078_RS06830 at 771.078 kb on + strand at 771.167 kb on + strand at 771.173 kb on - strand at 771.176 kb on + strand at 771.177 kb on - strand at 771.232 kb on + strand at 771.233 kb on - strand at 771.264 kb on - strand, within HMPREF1078_RS06835 at 771.314 kb on + strand, within HMPREF1078_RS06835 at 771.375 kb on + strand, within HMPREF1078_RS06835 at 771.441 kb on + strand, within HMPREF1078_RS06835 at 771.442 kb on - strand, within HMPREF1078_RS06835 at 771.616 kb on + strand, within HMPREF1078_RS06835 at 771.670 kb on - strand, within HMPREF1078_RS06835 at 771.717 kb on - strand, within HMPREF1078_RS06835 at 771.839 kb on + strand, within HMPREF1078_RS06835 at 771.840 kb on - strand, within HMPREF1078_RS06835 at 771.840 kb on - strand, within HMPREF1078_RS06835 at 771.894 kb on + strand, within HMPREF1078_RS06835 at 771.937 kb on - strand, within HMPREF1078_RS06835 at 772.022 kb on - strand, within HMPREF1078_RS06835 at 772.023 kb on + strand, within HMPREF1078_RS06835 at 772.023 kb on + strand, within HMPREF1078_RS06835 at 772.023 kb on + strand, within HMPREF1078_RS06835 at 772.024 kb on - strand, within HMPREF1078_RS06835 at 772.053 kb on - strand, within HMPREF1078_RS06835
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose 10 mg/mL (C) remove 768,970 + HMPREF1078_RS06820 0.77 -0.3 768,970 + HMPREF1078_RS06820 0.77 +0.3 768,971 - HMPREF1078_RS06820 0.78 +1.3 768,971 - HMPREF1078_RS06820 0.78 -0.7 768,971 - HMPREF1078_RS06820 0.78 +0.9 768,971 - HMPREF1078_RS06820 0.78 +0.4 769,029 - HMPREF1078_RS06820 0.86 -0.6 769,145 + -0.8 769,151 - +0.7 769,179 - +0.3 769,182 + -0.4 769,200 + -0.6 769,215 + -0.1 769,242 - +1.2 769,242 - -3.1 769,388 - HMPREF1078_RS06825 0.42 -0.7 769,477 + HMPREF1078_RS06825 0.62 +0.4 769,477 + HMPREF1078_RS06825 0.62 +0.3 769,478 - HMPREF1078_RS06825 0.62 +0.9 769,480 - HMPREF1078_RS06825 0.63 +1.2 769,480 - HMPREF1078_RS06825 0.63 -2.3 769,603 + +0.7 769,603 + +0.4 769,603 + +0.4 769,603 + +0.4 769,604 - +1.0 769,609 + +1.2 769,623 + +0.2 769,623 + +0.1 769,624 - -1.7 769,625 + +1.5 769,626 - -0.5 769,633 - +0.4 769,655 + +1.2 769,655 + +3.2 769,668 - +0.0 769,670 - -0.6 769,670 - -1.8 769,670 - -0.9 769,677 - -0.4 769,709 - +0.3 769,746 + +0.3 769,762 - -0.2 769,771 - +0.1 769,800 - +2.8 769,802 - -0.4 769,831 - -1.9 769,883 - -0.5 770,022 + HMPREF1078_RS06830 0.13 +1.2 770,023 - HMPREF1078_RS06830 0.13 -0.4 770,023 - HMPREF1078_RS06830 0.13 -0.3 770,023 - HMPREF1078_RS06830 0.13 -0.5 770,232 + HMPREF1078_RS06830 0.29 +2.3 770,255 + HMPREF1078_RS06830 0.31 +0.8 770,285 + HMPREF1078_RS06830 0.33 -1.1 770,364 - HMPREF1078_RS06830 0.39 -0.1 770,600 - HMPREF1078_RS06830 0.58 -2.2 770,624 + HMPREF1078_RS06830 0.59 -1.2 770,681 + HMPREF1078_RS06830 0.64 +0.9 770,681 + HMPREF1078_RS06830 0.64 +0.3 770,681 + HMPREF1078_RS06830 0.64 +0.3 770,682 - HMPREF1078_RS06830 0.64 -1.2 770,682 - HMPREF1078_RS06830 0.64 +0.9 770,710 - HMPREF1078_RS06830 0.66 +0.9 770,783 + HMPREF1078_RS06830 0.72 +0.4 770,858 + HMPREF1078_RS06830 0.77 +0.6 770,858 + HMPREF1078_RS06830 0.77 +0.7 770,858 + HMPREF1078_RS06830 0.77 -0.1 770,859 - HMPREF1078_RS06830 0.77 -3.4 770,871 - HMPREF1078_RS06830 0.78 +2.8 770,959 - HMPREF1078_RS06830 0.85 -0.3 771,002 + HMPREF1078_RS06830 0.88 +0.2 771,003 - HMPREF1078_RS06830 0.88 +1.5 771,078 + +0.9 771,167 + +0.4 771,173 - +1.1 771,176 + +1.7 771,177 - -1.2 771,232 + -0.4 771,233 - +1.8 771,264 - HMPREF1078_RS06835 0.11 +1.2 771,314 + HMPREF1078_RS06835 0.15 -0.2 771,375 + HMPREF1078_RS06835 0.22 -0.7 771,441 + HMPREF1078_RS06835 0.28 -0.2 771,442 - HMPREF1078_RS06835 0.28 +0.2 771,616 + HMPREF1078_RS06835 0.45 +0.8 771,670 - HMPREF1078_RS06835 0.51 -0.1 771,717 - HMPREF1078_RS06835 0.55 -0.4 771,839 + HMPREF1078_RS06835 0.68 +0.5 771,840 - HMPREF1078_RS06835 0.68 -1.1 771,840 - HMPREF1078_RS06835 0.68 -0.7 771,894 + HMPREF1078_RS06835 0.73 -0.9 771,937 - HMPREF1078_RS06835 0.77 -0.9 772,022 - HMPREF1078_RS06835 0.86 -0.5 772,023 + HMPREF1078_RS06835 0.86 +0.2 772,023 + HMPREF1078_RS06835 0.86 +0.9 772,023 + HMPREF1078_RS06835 0.86 -4.0 772,024 - HMPREF1078_RS06835 0.86 -0.0 772,053 - HMPREF1078_RS06835 0.89 +0.3
Or see this region's nucleotide sequence