Experiment: D-Glucose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS05705 and HMPREF1078_RS05710 are separated by 148 nucleotides HMPREF1078_RS05710 and HMPREF1078_RS05715 are separated by 19 nucleotides
HMPREF1078_RS05705: HMPREF1078_RS05705 - family 43 glycosylhydrolase, at 451,357 to 452,352
_RS05705
HMPREF1078_RS05710: HMPREF1078_RS05710 - family 43 glycosylhydrolase, at 452,501 to 453,475
_RS05710
HMPREF1078_RS05715: HMPREF1078_RS05715 - RagB/SusD family nutrient uptake outer membrane protein, at 453,495 to 455,225
_RS05715
Position (kb) 452
453
454 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 451.716 kb on + strand, within HMPREF1078_RS05705 at 451.762 kb on - strand, within HMPREF1078_RS05705 at 451.762 kb on - strand, within HMPREF1078_RS05705 at 451.836 kb on - strand, within HMPREF1078_RS05705 at 451.867 kb on + strand, within HMPREF1078_RS05705 at 451.868 kb on - strand, within HMPREF1078_RS05705 at 452.183 kb on + strand, within HMPREF1078_RS05705 at 452.183 kb on + strand, within HMPREF1078_RS05705 at 452.262 kb on - strand at 452.263 kb on + strand at 452.264 kb on - strand at 452.326 kb on + strand at 452.326 kb on + strand at 452.352 kb on + strand at 452.400 kb on - strand at 452.402 kb on - strand at 452.436 kb on + strand at 452.436 kb on + strand at 452.451 kb on + strand at 452.452 kb on - strand at 452.452 kb on - strand at 452.465 kb on + strand at 452.492 kb on - strand at 452.492 kb on - strand at 452.494 kb on - strand at 452.494 kb on - strand at 452.498 kb on + strand at 452.532 kb on - strand at 452.551 kb on + strand at 452.551 kb on + strand at 452.551 kb on + strand at 452.564 kb on - strand at 452.575 kb on + strand at 452.579 kb on - strand at 452.586 kb on + strand at 452.587 kb on - strand at 452.595 kb on + strand at 452.755 kb on + strand, within HMPREF1078_RS05710 at 452.776 kb on + strand, within HMPREF1078_RS05710 at 452.776 kb on + strand, within HMPREF1078_RS05710 at 452.777 kb on - strand, within HMPREF1078_RS05710 at 452.778 kb on + strand, within HMPREF1078_RS05710 at 452.778 kb on + strand, within HMPREF1078_RS05710 at 452.778 kb on + strand, within HMPREF1078_RS05710 at 452.786 kb on - strand, within HMPREF1078_RS05710 at 452.847 kb on + strand, within HMPREF1078_RS05710 at 452.847 kb on + strand, within HMPREF1078_RS05710 at 452.964 kb on + strand, within HMPREF1078_RS05710 at 453.007 kb on + strand, within HMPREF1078_RS05710 at 453.008 kb on - strand, within HMPREF1078_RS05710 at 453.077 kb on - strand, within HMPREF1078_RS05710 at 453.126 kb on + strand, within HMPREF1078_RS05710 at 453.126 kb on + strand, within HMPREF1078_RS05710 at 453.135 kb on + strand, within HMPREF1078_RS05710 at 453.152 kb on - strand, within HMPREF1078_RS05710 at 453.278 kb on - strand, within HMPREF1078_RS05710 at 453.278 kb on - strand, within HMPREF1078_RS05710 at 453.278 kb on - strand, within HMPREF1078_RS05710 at 453.293 kb on + strand, within HMPREF1078_RS05710 at 453.294 kb on - strand, within HMPREF1078_RS05710 at 453.317 kb on - strand, within HMPREF1078_RS05710 at 453.318 kb on + strand, within HMPREF1078_RS05710 at 453.318 kb on + strand, within HMPREF1078_RS05710 at 453.318 kb on + strand, within HMPREF1078_RS05710 at 453.319 kb on - strand, within HMPREF1078_RS05710 at 453.322 kb on - strand, within HMPREF1078_RS05710 at 453.391 kb on + strand at 453.399 kb on + strand at 453.399 kb on + strand at 453.399 kb on + strand at 453.400 kb on - strand at 453.465 kb on + strand at 453.465 kb on + strand at 453.465 kb on + strand at 453.466 kb on - strand at 453.466 kb on - strand at 453.467 kb on + strand at 453.467 kb on + strand at 453.480 kb on - strand at 453.480 kb on - strand at 453.497 kb on - strand at 453.573 kb on + strand at 453.584 kb on - strand at 453.608 kb on + strand at 453.771 kb on + strand, within HMPREF1078_RS05715 at 453.792 kb on + strand, within HMPREF1078_RS05715 at 453.793 kb on - strand, within HMPREF1078_RS05715 at 453.798 kb on - strand, within HMPREF1078_RS05715 at 453.800 kb on + strand, within HMPREF1078_RS05715 at 453.801 kb on - strand, within HMPREF1078_RS05715 at 453.801 kb on - strand, within HMPREF1078_RS05715 at 453.803 kb on - strand, within HMPREF1078_RS05715 at 453.803 kb on - strand, within HMPREF1078_RS05715 at 453.803 kb on - strand, within HMPREF1078_RS05715 at 453.803 kb on - strand, within HMPREF1078_RS05715 at 453.859 kb on + strand, within HMPREF1078_RS05715 at 453.859 kb on + strand, within HMPREF1078_RS05715 at 453.860 kb on - strand, within HMPREF1078_RS05715 at 453.860 kb on - strand, within HMPREF1078_RS05715 at 453.860 kb on - strand, within HMPREF1078_RS05715 at 453.860 kb on - strand, within HMPREF1078_RS05715 at 453.860 kb on - strand, within HMPREF1078_RS05715 at 453.864 kb on - strand, within HMPREF1078_RS05715 at 453.864 kb on - strand, within HMPREF1078_RS05715 at 453.949 kb on + strand, within HMPREF1078_RS05715 at 453.949 kb on + strand, within HMPREF1078_RS05715 at 453.950 kb on - strand, within HMPREF1078_RS05715 at 453.956 kb on - strand, within HMPREF1078_RS05715 at 453.964 kb on + strand, within HMPREF1078_RS05715 at 454.053 kb on - strand, within HMPREF1078_RS05715 at 454.053 kb on - strand, within HMPREF1078_RS05715 at 454.055 kb on - strand, within HMPREF1078_RS05715 at 454.376 kb on - strand, within HMPREF1078_RS05715 at 454.376 kb on - strand, within HMPREF1078_RS05715 at 454.376 kb on - strand, within HMPREF1078_RS05715 at 454.379 kb on + strand, within HMPREF1078_RS05715 at 454.379 kb on + strand, within HMPREF1078_RS05715 at 454.379 kb on + strand, within HMPREF1078_RS05715 at 454.379 kb on + strand, within HMPREF1078_RS05715 at 454.380 kb on - strand, within HMPREF1078_RS05715 at 454.391 kb on + strand, within HMPREF1078_RS05715 at 454.392 kb on - strand, within HMPREF1078_RS05715
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose 10 mg/mL (C) remove 451,716 + HMPREF1078_RS05705 0.36 -0.8 451,762 - HMPREF1078_RS05705 0.41 +0.3 451,762 - HMPREF1078_RS05705 0.41 +0.5 451,836 - HMPREF1078_RS05705 0.48 -0.4 451,867 + HMPREF1078_RS05705 0.51 -1.9 451,868 - HMPREF1078_RS05705 0.51 -0.7 452,183 + HMPREF1078_RS05705 0.83 -1.4 452,183 + HMPREF1078_RS05705 0.83 +0.4 452,262 - +0.5 452,263 + +0.6 452,264 - +0.6 452,326 + -0.7 452,326 + -1.6 452,352 + -1.1 452,400 - +0.3 452,402 - -1.5 452,436 + +1.2 452,436 + -0.1 452,451 + -2.5 452,452 - +1.6 452,452 - +1.0 452,465 + -1.1 452,492 - +0.2 452,492 - -0.0 452,494 - -0.2 452,494 - -3.0 452,498 + -0.4 452,532 - -0.8 452,551 + +0.6 452,551 + +0.3 452,551 + +1.1 452,564 - -0.2 452,575 + +0.3 452,579 - +0.8 452,586 + +1.0 452,587 - +0.9 452,595 + -0.7 452,755 + HMPREF1078_RS05710 0.26 -0.4 452,776 + HMPREF1078_RS05710 0.28 -0.8 452,776 + HMPREF1078_RS05710 0.28 -1.5 452,777 - HMPREF1078_RS05710 0.28 -1.2 452,778 + HMPREF1078_RS05710 0.28 -0.2 452,778 + HMPREF1078_RS05710 0.28 +0.6 452,778 + HMPREF1078_RS05710 0.28 -0.1 452,786 - HMPREF1078_RS05710 0.29 +0.5 452,847 + HMPREF1078_RS05710 0.35 +0.5 452,847 + HMPREF1078_RS05710 0.35 -0.6 452,964 + HMPREF1078_RS05710 0.47 -0.4 453,007 + HMPREF1078_RS05710 0.52 +0.2 453,008 - HMPREF1078_RS05710 0.52 -0.9 453,077 - HMPREF1078_RS05710 0.59 +0.8 453,126 + HMPREF1078_RS05710 0.64 +0.3 453,126 + HMPREF1078_RS05710 0.64 -0.5 453,135 + HMPREF1078_RS05710 0.65 -0.3 453,152 - HMPREF1078_RS05710 0.67 -0.0 453,278 - HMPREF1078_RS05710 0.80 -0.5 453,278 - HMPREF1078_RS05710 0.80 -2.0 453,278 - HMPREF1078_RS05710 0.80 -2.0 453,293 + HMPREF1078_RS05710 0.81 -0.5 453,294 - HMPREF1078_RS05710 0.81 +0.3 453,317 - HMPREF1078_RS05710 0.84 -0.5 453,318 + HMPREF1078_RS05710 0.84 -1.2 453,318 + HMPREF1078_RS05710 0.84 +0.5 453,318 + HMPREF1078_RS05710 0.84 -0.1 453,319 - HMPREF1078_RS05710 0.84 +0.2 453,322 - HMPREF1078_RS05710 0.84 +0.7 453,391 + -2.4 453,399 + +0.5 453,399 + -2.0 453,399 + -0.2 453,400 - -0.2 453,465 + +0.4 453,465 + +0.6 453,465 + +0.5 453,466 - -2.6 453,466 - -1.0 453,467 + -0.3 453,467 + -1.0 453,480 - -3.0 453,480 - +0.8 453,497 - -1.4 453,573 + -0.9 453,584 - -0.8 453,608 + -0.2 453,771 + HMPREF1078_RS05715 0.16 -0.0 453,792 + HMPREF1078_RS05715 0.17 +0.5 453,793 - HMPREF1078_RS05715 0.17 -0.8 453,798 - HMPREF1078_RS05715 0.18 -0.9 453,800 + HMPREF1078_RS05715 0.18 -0.2 453,801 - HMPREF1078_RS05715 0.18 +0.5 453,801 - HMPREF1078_RS05715 0.18 -1.1 453,803 - HMPREF1078_RS05715 0.18 -0.3 453,803 - HMPREF1078_RS05715 0.18 -1.7 453,803 - HMPREF1078_RS05715 0.18 -0.2 453,803 - HMPREF1078_RS05715 0.18 -0.9 453,859 + HMPREF1078_RS05715 0.21 +0.5 453,859 + HMPREF1078_RS05715 0.21 -2.1 453,860 - HMPREF1078_RS05715 0.21 +0.3 453,860 - HMPREF1078_RS05715 0.21 -0.3 453,860 - HMPREF1078_RS05715 0.21 -1.9 453,860 - HMPREF1078_RS05715 0.21 -2.6 453,860 - HMPREF1078_RS05715 0.21 +1.7 453,864 - HMPREF1078_RS05715 0.21 -0.1 453,864 - HMPREF1078_RS05715 0.21 +0.7 453,949 + HMPREF1078_RS05715 0.26 -1.0 453,949 + HMPREF1078_RS05715 0.26 +0.1 453,950 - HMPREF1078_RS05715 0.26 -0.1 453,956 - HMPREF1078_RS05715 0.27 +0.3 453,964 + HMPREF1078_RS05715 0.27 -0.4 454,053 - HMPREF1078_RS05715 0.32 +1.5 454,053 - HMPREF1078_RS05715 0.32 +1.6 454,055 - HMPREF1078_RS05715 0.32 +0.1 454,376 - HMPREF1078_RS05715 0.51 +0.4 454,376 - HMPREF1078_RS05715 0.51 -0.2 454,376 - HMPREF1078_RS05715 0.51 -0.7 454,379 + HMPREF1078_RS05715 0.51 -1.0 454,379 + HMPREF1078_RS05715 0.51 -1.9 454,379 + HMPREF1078_RS05715 0.51 +0.7 454,379 + HMPREF1078_RS05715 0.51 -2.6 454,380 - HMPREF1078_RS05715 0.51 -2.1 454,391 + HMPREF1078_RS05715 0.52 -0.1 454,392 - HMPREF1078_RS05715 0.52 -0.5
Or see this region's nucleotide sequence