Experiment: RCM 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS07975 and HMPREF1078_RS07980 are separated by 399 nucleotides HMPREF1078_RS07980 and HMPREF1078_RS07985 are separated by 8 nucleotides HMPREF1078_RS07985 and HMPREF1078_RS07990 are separated by 97 nucleotides
HMPREF1078_RS07975: HMPREF1078_RS07975 - GNAT family N-acetyltransferase, at 156,049 to 156,621
_RS07975
HMPREF1078_RS07980: HMPREF1078_RS07980 - VOC family protein, at 157,021 to 157,377
_RS07980
HMPREF1078_RS07985: HMPREF1078_RS07985 - ClbS/DfsB family four-helix bundle protein, at 157,386 to 157,925
_RS07985
HMPREF1078_RS07990: HMPREF1078_RS07990 - site-specific integrase, at 158,023 to 159,039
_RS07990
Position (kb) 157
158 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 156.400 kb on + strand, within HMPREF1078_RS07975 at 156.512 kb on - strand, within HMPREF1078_RS07975 at 156.601 kb on + strand at 156.602 kb on - strand at 156.661 kb on - strand at 156.665 kb on + strand at 156.665 kb on + strand at 156.665 kb on + strand at 156.666 kb on - strand at 156.666 kb on - strand at 156.666 kb on - strand at 156.680 kb on - strand at 156.712 kb on + strand at 156.788 kb on - strand at 156.791 kb on + strand at 156.820 kb on + strand at 156.829 kb on - strand at 156.849 kb on - strand at 156.910 kb on - strand at 156.914 kb on - strand at 156.927 kb on + strand at 157.038 kb on - strand at 157.039 kb on + strand at 157.040 kb on - strand at 157.218 kb on + strand, within HMPREF1078_RS07980 at 157.219 kb on - strand, within HMPREF1078_RS07980 at 157.237 kb on - strand, within HMPREF1078_RS07980 at 157.358 kb on - strand at 157.364 kb on + strand at 157.366 kb on + strand at 157.366 kb on + strand at 157.366 kb on + strand at 157.367 kb on - strand at 157.368 kb on + strand at 157.368 kb on + strand at 157.369 kb on - strand at 157.369 kb on - strand at 157.369 kb on - strand at 157.467 kb on - strand, within HMPREF1078_RS07985 at 157.598 kb on - strand, within HMPREF1078_RS07985 at 157.607 kb on - strand, within HMPREF1078_RS07985 at 157.653 kb on + strand, within HMPREF1078_RS07985 at 157.668 kb on + strand, within HMPREF1078_RS07985 at 157.728 kb on - strand, within HMPREF1078_RS07985 at 157.760 kb on - strand, within HMPREF1078_RS07985 at 157.873 kb on - strand at 157.916 kb on + strand at 157.917 kb on - strand at 157.942 kb on - strand at 157.955 kb on + strand at 157.955 kb on + strand at 157.956 kb on - strand at 157.997 kb on + strand at 158.000 kb on - strand at 158.025 kb on - strand at 158.041 kb on - strand at 158.166 kb on + strand, within HMPREF1078_RS07990 at 158.167 kb on - strand, within HMPREF1078_RS07990 at 158.167 kb on - strand, within HMPREF1078_RS07990 at 158.239 kb on + strand, within HMPREF1078_RS07990 at 158.239 kb on + strand, within HMPREF1078_RS07990 at 158.239 kb on + strand, within HMPREF1078_RS07990 at 158.299 kb on - strand, within HMPREF1078_RS07990 at 158.341 kb on + strand, within HMPREF1078_RS07990 at 158.344 kb on + strand, within HMPREF1078_RS07990 at 158.344 kb on + strand, within HMPREF1078_RS07990 at 158.435 kb on - strand, within HMPREF1078_RS07990 at 158.488 kb on + strand, within HMPREF1078_RS07990 at 158.606 kb on + strand, within HMPREF1078_RS07990 at 158.608 kb on + strand, within HMPREF1078_RS07990 at 158.631 kb on + strand, within HMPREF1078_RS07990 at 158.633 kb on + strand, within HMPREF1078_RS07990 at 158.633 kb on + strand, within HMPREF1078_RS07990 at 158.634 kb on - strand, within HMPREF1078_RS07990 at 158.634 kb on - strand, within HMPREF1078_RS07990 at 158.634 kb on - strand, within HMPREF1078_RS07990 at 158.685 kb on - strand, within HMPREF1078_RS07990 at 158.733 kb on + strand, within HMPREF1078_RS07990 at 158.734 kb on - strand, within HMPREF1078_RS07990 at 158.734 kb on - strand, within HMPREF1078_RS07990 at 158.814 kb on + strand, within HMPREF1078_RS07990 at 158.816 kb on + strand, within HMPREF1078_RS07990 at 158.816 kb on + strand, within HMPREF1078_RS07990 at 158.905 kb on + strand, within HMPREF1078_RS07990 at 158.906 kb on - strand, within HMPREF1078_RS07990 at 158.910 kb on - strand, within HMPREF1078_RS07990 at 158.910 kb on - strand, within HMPREF1078_RS07990
Per-strain Table
Position Strand Gene LocusTag Fraction RCM 1 x (C) remove 156,400 + HMPREF1078_RS07975 0.61 -0.2 156,512 - HMPREF1078_RS07975 0.81 +0.3 156,601 + -3.4 156,602 - +0.5 156,661 - +1.5 156,665 + -1.2 156,665 + -0.3 156,665 + -0.8 156,666 - -0.3 156,666 - -0.1 156,666 - -1.1 156,680 - -0.3 156,712 + -0.6 156,788 - -1.5 156,791 + -0.3 156,820 + -0.4 156,829 - -0.9 156,849 - +0.1 156,910 - -1.7 156,914 - -0.4 156,927 + -0.2 157,038 - +1.0 157,039 + -1.1 157,040 - +0.2 157,218 + HMPREF1078_RS07980 0.55 -0.1 157,219 - HMPREF1078_RS07980 0.55 +0.7 157,237 - HMPREF1078_RS07980 0.61 +0.4 157,358 - +0.9 157,364 + +1.6 157,366 + -0.0 157,366 + +0.1 157,366 + -2.1 157,367 - +0.7 157,368 + -0.3 157,368 + -1.3 157,369 - -1.6 157,369 - +0.7 157,369 - +0.1 157,467 - HMPREF1078_RS07985 0.15 +0.6 157,598 - HMPREF1078_RS07985 0.39 +1.5 157,607 - HMPREF1078_RS07985 0.41 +0.7 157,653 + HMPREF1078_RS07985 0.49 -1.1 157,668 + HMPREF1078_RS07985 0.52 -0.3 157,728 - HMPREF1078_RS07985 0.63 +0.9 157,760 - HMPREF1078_RS07985 0.69 +2.0 157,873 - -0.0 157,916 + -0.0 157,917 - -1.2 157,942 - +0.4 157,955 + +0.2 157,955 + -1.3 157,956 - -0.1 157,997 + -0.7 158,000 - -1.5 158,025 - +0.5 158,041 - +1.3 158,166 + HMPREF1078_RS07990 0.14 +0.2 158,167 - HMPREF1078_RS07990 0.14 +0.4 158,167 - HMPREF1078_RS07990 0.14 +1.0 158,239 + HMPREF1078_RS07990 0.21 -0.7 158,239 + HMPREF1078_RS07990 0.21 +0.2 158,239 + HMPREF1078_RS07990 0.21 -1.0 158,299 - HMPREF1078_RS07990 0.27 -1.0 158,341 + HMPREF1078_RS07990 0.31 +0.6 158,344 + HMPREF1078_RS07990 0.32 -0.2 158,344 + HMPREF1078_RS07990 0.32 -0.9 158,435 - HMPREF1078_RS07990 0.41 -1.0 158,488 + HMPREF1078_RS07990 0.46 +0.1 158,606 + HMPREF1078_RS07990 0.57 +0.3 158,608 + HMPREF1078_RS07990 0.58 -0.3 158,631 + HMPREF1078_RS07990 0.60 +0.6 158,633 + HMPREF1078_RS07990 0.60 -0.8 158,633 + HMPREF1078_RS07990 0.60 +1.0 158,634 - HMPREF1078_RS07990 0.60 -1.0 158,634 - HMPREF1078_RS07990 0.60 +0.1 158,634 - HMPREF1078_RS07990 0.60 +0.6 158,685 - HMPREF1078_RS07990 0.65 -0.9 158,733 + HMPREF1078_RS07990 0.70 +0.1 158,734 - HMPREF1078_RS07990 0.70 +0.3 158,734 - HMPREF1078_RS07990 0.70 +0.3 158,814 + HMPREF1078_RS07990 0.78 +1.0 158,816 + HMPREF1078_RS07990 0.78 -0.1 158,816 + HMPREF1078_RS07990 0.78 +0.4 158,905 + HMPREF1078_RS07990 0.87 -1.9 158,906 - HMPREF1078_RS07990 0.87 -0.2 158,910 - HMPREF1078_RS07990 0.87 +0.9 158,910 - HMPREF1078_RS07990 0.87 +0.7
Or see this region's nucleotide sequence