Experiment: RCM 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS05150 and HMPREF1078_RS05155 are separated by 175 nucleotides HMPREF1078_RS05155 and HMPREF1078_RS05160 are separated by 180 nucleotides HMPREF1078_RS05160 and HMPREF1078_RS05165 are separated by 300 nucleotides
HMPREF1078_RS05150: HMPREF1078_RS05150 - Fic family protein, at 291,637 to 292,446
_RS05150
HMPREF1078_RS05155: HMPREF1078_RS05155 - tRNA-Leu, at 292,622 to 292,705
_RS05155
HMPREF1078_RS05160: HMPREF1078_RS05160 - mannose-1-phosphate guanylyltransferase, at 292,886 to 293,965
_RS05160
HMPREF1078_RS05165: HMPREF1078_RS05165 - GSCFA domain-containing protein, at 294,266 to 295,249
_RS05165
Position (kb) 292
293
294 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 291.895 kb on - strand, within HMPREF1078_RS05150 at 291.895 kb on - strand, within HMPREF1078_RS05150 at 291.907 kb on - strand, within HMPREF1078_RS05150 at 292.017 kb on - strand, within HMPREF1078_RS05150 at 292.025 kb on + strand, within HMPREF1078_RS05150 at 292.026 kb on - strand, within HMPREF1078_RS05150 at 292.171 kb on - strand, within HMPREF1078_RS05150 at 292.243 kb on + strand, within HMPREF1078_RS05150 at 292.322 kb on - strand, within HMPREF1078_RS05150 at 292.350 kb on - strand, within HMPREF1078_RS05150 at 292.350 kb on - strand, within HMPREF1078_RS05150 at 292.358 kb on + strand, within HMPREF1078_RS05150 at 292.358 kb on + strand, within HMPREF1078_RS05150 at 292.367 kb on + strand at 292.410 kb on - strand at 292.454 kb on - strand at 292.489 kb on - strand at 292.489 kb on - strand at 292.489 kb on - strand at 292.496 kb on - strand at 292.514 kb on + strand at 292.522 kb on + strand at 292.523 kb on - strand at 292.523 kb on - strand at 292.523 kb on - strand at 292.531 kb on - strand at 292.531 kb on - strand at 292.604 kb on - strand at 292.607 kb on + strand at 292.608 kb on - strand at 292.797 kb on - strand at 292.798 kb on + strand at 292.813 kb on + strand at 292.814 kb on - strand at 292.820 kb on - strand at 292.859 kb on - strand at 292.859 kb on - strand at 292.859 kb on - strand at 292.963 kb on + strand at 293.004 kb on + strand, within HMPREF1078_RS05160 at 293.055 kb on - strand, within HMPREF1078_RS05160 at 293.056 kb on + strand, within HMPREF1078_RS05160 at 293.056 kb on + strand, within HMPREF1078_RS05160 at 293.057 kb on - strand, within HMPREF1078_RS05160 at 293.061 kb on + strand, within HMPREF1078_RS05160 at 293.089 kb on - strand, within HMPREF1078_RS05160 at 293.125 kb on - strand, within HMPREF1078_RS05160 at 293.146 kb on + strand, within HMPREF1078_RS05160 at 293.147 kb on - strand, within HMPREF1078_RS05160 at 293.147 kb on - strand, within HMPREF1078_RS05160 at 293.147 kb on - strand, within HMPREF1078_RS05160 at 293.149 kb on + strand, within HMPREF1078_RS05160 at 293.149 kb on + strand, within HMPREF1078_RS05160 at 293.169 kb on - strand, within HMPREF1078_RS05160 at 293.178 kb on - strand, within HMPREF1078_RS05160 at 293.178 kb on - strand, within HMPREF1078_RS05160 at 293.182 kb on + strand, within HMPREF1078_RS05160 at 293.183 kb on - strand, within HMPREF1078_RS05160 at 293.183 kb on - strand, within HMPREF1078_RS05160 at 293.183 kb on - strand, within HMPREF1078_RS05160 at 293.209 kb on + strand, within HMPREF1078_RS05160 at 293.210 kb on - strand, within HMPREF1078_RS05160 at 293.234 kb on - strand, within HMPREF1078_RS05160 at 293.307 kb on + strand, within HMPREF1078_RS05160 at 293.311 kb on + strand, within HMPREF1078_RS05160 at 293.311 kb on + strand, within HMPREF1078_RS05160 at 293.311 kb on + strand, within HMPREF1078_RS05160 at 293.312 kb on - strand, within HMPREF1078_RS05160 at 293.312 kb on - strand, within HMPREF1078_RS05160 at 293.312 kb on - strand, within HMPREF1078_RS05160 at 293.312 kb on - strand, within HMPREF1078_RS05160 at 293.354 kb on + strand, within HMPREF1078_RS05160 at 293.354 kb on + strand, within HMPREF1078_RS05160 at 293.356 kb on + strand, within HMPREF1078_RS05160 at 293.357 kb on - strand, within HMPREF1078_RS05160 at 293.372 kb on - strand, within HMPREF1078_RS05160 at 293.372 kb on - strand, within HMPREF1078_RS05160 at 293.612 kb on + strand, within HMPREF1078_RS05160 at 293.623 kb on + strand, within HMPREF1078_RS05160 at 293.624 kb on - strand, within HMPREF1078_RS05160 at 293.664 kb on + strand, within HMPREF1078_RS05160 at 293.664 kb on + strand, within HMPREF1078_RS05160 at 293.664 kb on + strand, within HMPREF1078_RS05160 at 293.665 kb on - strand, within HMPREF1078_RS05160 at 293.665 kb on - strand, within HMPREF1078_RS05160 at 293.665 kb on - strand, within HMPREF1078_RS05160 at 293.665 kb on - strand, within HMPREF1078_RS05160 at 293.665 kb on - strand, within HMPREF1078_RS05160 at 293.666 kb on + strand, within HMPREF1078_RS05160 at 293.666 kb on + strand, within HMPREF1078_RS05160 at 293.666 kb on + strand, within HMPREF1078_RS05160 at 293.668 kb on + strand, within HMPREF1078_RS05160 at 293.668 kb on + strand, within HMPREF1078_RS05160 at 293.668 kb on + strand, within HMPREF1078_RS05160 at 293.668 kb on + strand, within HMPREF1078_RS05160 at 293.668 kb on + strand, within HMPREF1078_RS05160 at 293.668 kb on + strand, within HMPREF1078_RS05160 at 293.668 kb on + strand, within HMPREF1078_RS05160 at 293.668 kb on + strand, within HMPREF1078_RS05160 at 293.668 kb on + strand, within HMPREF1078_RS05160 at 293.669 kb on - strand, within HMPREF1078_RS05160 at 293.669 kb on - strand, within HMPREF1078_RS05160 at 293.669 kb on - strand, within HMPREF1078_RS05160 at 293.775 kb on - strand, within HMPREF1078_RS05160 at 293.835 kb on + strand, within HMPREF1078_RS05160 at 293.964 kb on - strand at 293.964 kb on - strand at 293.971 kb on - strand at 294.097 kb on + strand at 294.097 kb on + strand at 294.099 kb on + strand at 294.100 kb on - strand at 294.144 kb on + strand at 294.145 kb on - strand at 294.156 kb on + strand at 294.161 kb on - strand at 294.163 kb on - strand at 294.210 kb on - strand at 294.246 kb on - strand at 294.246 kb on - strand at 294.247 kb on + strand at 294.276 kb on - strand at 294.320 kb on - strand at 294.415 kb on + strand, within HMPREF1078_RS05165 at 294.423 kb on - strand, within HMPREF1078_RS05165 at 294.460 kb on - strand, within HMPREF1078_RS05165 at 294.512 kb on + strand, within HMPREF1078_RS05165 at 294.656 kb on + strand, within HMPREF1078_RS05165 at 294.656 kb on + strand, within HMPREF1078_RS05165 at 294.697 kb on + strand, within HMPREF1078_RS05165 at 294.730 kb on - strand, within HMPREF1078_RS05165 at 294.733 kb on + strand, within HMPREF1078_RS05165 at 294.734 kb on - strand, within HMPREF1078_RS05165
Per-strain Table
Position Strand Gene LocusTag Fraction RCM 1 x (C) remove 291,895 - HMPREF1078_RS05150 0.32 -2.0 291,895 - HMPREF1078_RS05150 0.32 -0.3 291,907 - HMPREF1078_RS05150 0.33 +0.5 292,017 - HMPREF1078_RS05150 0.47 +0.2 292,025 + HMPREF1078_RS05150 0.48 +1.5 292,026 - HMPREF1078_RS05150 0.48 +1.2 292,171 - HMPREF1078_RS05150 0.66 -0.4 292,243 + HMPREF1078_RS05150 0.75 -0.6 292,322 - HMPREF1078_RS05150 0.85 +0.2 292,350 - HMPREF1078_RS05150 0.88 +0.5 292,350 - HMPREF1078_RS05150 0.88 -0.3 292,358 + HMPREF1078_RS05150 0.89 -0.0 292,358 + HMPREF1078_RS05150 0.89 -0.3 292,367 + +1.4 292,410 - -0.0 292,454 - -0.3 292,489 - -0.2 292,489 - -0.3 292,489 - +0.0 292,496 - -1.2 292,514 + -1.5 292,522 + +0.5 292,523 - +0.7 292,523 - +0.4 292,523 - -0.3 292,531 - +0.2 292,531 - +0.8 292,604 - -0.5 292,607 + -0.3 292,608 - +0.2 292,797 - -0.0 292,798 + -0.4 292,813 + -2.2 292,814 - -0.8 292,820 - -2.2 292,859 - +0.0 292,859 - -0.8 292,859 - -1.7 292,963 + +0.5 293,004 + HMPREF1078_RS05160 0.11 -0.0 293,055 - HMPREF1078_RS05160 0.16 -2.8 293,056 + HMPREF1078_RS05160 0.16 +0.5 293,056 + HMPREF1078_RS05160 0.16 -0.5 293,057 - HMPREF1078_RS05160 0.16 -2.3 293,061 + HMPREF1078_RS05160 0.16 -0.0 293,089 - HMPREF1078_RS05160 0.19 +0.1 293,125 - HMPREF1078_RS05160 0.22 +0.6 293,146 + HMPREF1078_RS05160 0.24 -1.2 293,147 - HMPREF1078_RS05160 0.24 +1.1 293,147 - HMPREF1078_RS05160 0.24 -2.1 293,147 - HMPREF1078_RS05160 0.24 -1.4 293,149 + HMPREF1078_RS05160 0.24 -0.7 293,149 + HMPREF1078_RS05160 0.24 -0.8 293,169 - HMPREF1078_RS05160 0.26 +0.5 293,178 - HMPREF1078_RS05160 0.27 -0.0 293,178 - HMPREF1078_RS05160 0.27 +0.6 293,182 + HMPREF1078_RS05160 0.27 -1.5 293,183 - HMPREF1078_RS05160 0.28 -2.0 293,183 - HMPREF1078_RS05160 0.28 -0.6 293,183 - HMPREF1078_RS05160 0.28 +0.1 293,209 + HMPREF1078_RS05160 0.30 -0.0 293,210 - HMPREF1078_RS05160 0.30 +0.5 293,234 - HMPREF1078_RS05160 0.32 -0.6 293,307 + HMPREF1078_RS05160 0.39 -0.5 293,311 + HMPREF1078_RS05160 0.39 +0.5 293,311 + HMPREF1078_RS05160 0.39 -2.4 293,311 + HMPREF1078_RS05160 0.39 +0.0 293,312 - HMPREF1078_RS05160 0.39 +0.7 293,312 - HMPREF1078_RS05160 0.39 -1.4 293,312 - HMPREF1078_RS05160 0.39 -0.3 293,312 - HMPREF1078_RS05160 0.39 -1.2 293,354 + HMPREF1078_RS05160 0.43 -0.3 293,354 + HMPREF1078_RS05160 0.43 +0.4 293,356 + HMPREF1078_RS05160 0.44 +1.0 293,357 - HMPREF1078_RS05160 0.44 -0.9 293,372 - HMPREF1078_RS05160 0.45 +2.2 293,372 - HMPREF1078_RS05160 0.45 -0.9 293,612 + HMPREF1078_RS05160 0.67 -0.5 293,623 + HMPREF1078_RS05160 0.68 -0.6 293,624 - HMPREF1078_RS05160 0.68 -1.8 293,664 + HMPREF1078_RS05160 0.72 -0.9 293,664 + HMPREF1078_RS05160 0.72 -2.0 293,664 + HMPREF1078_RS05160 0.72 -3.4 293,665 - HMPREF1078_RS05160 0.72 -0.9 293,665 - HMPREF1078_RS05160 0.72 -1.2 293,665 - HMPREF1078_RS05160 0.72 -0.3 293,665 - HMPREF1078_RS05160 0.72 +0.0 293,665 - HMPREF1078_RS05160 0.72 -1.6 293,666 + HMPREF1078_RS05160 0.72 +0.7 293,666 + HMPREF1078_RS05160 0.72 +0.1 293,666 + HMPREF1078_RS05160 0.72 -0.7 293,668 + HMPREF1078_RS05160 0.72 -1.4 293,668 + HMPREF1078_RS05160 0.72 -0.5 293,668 + HMPREF1078_RS05160 0.72 +1.2 293,668 + HMPREF1078_RS05160 0.72 +0.5 293,668 + HMPREF1078_RS05160 0.72 +0.7 293,668 + HMPREF1078_RS05160 0.72 -1.3 293,668 + HMPREF1078_RS05160 0.72 -0.8 293,668 + HMPREF1078_RS05160 0.72 -0.5 293,668 + HMPREF1078_RS05160 0.72 -1.2 293,669 - HMPREF1078_RS05160 0.72 -1.4 293,669 - HMPREF1078_RS05160 0.72 -1.7 293,669 - HMPREF1078_RS05160 0.72 +1.0 293,775 - HMPREF1078_RS05160 0.82 +0.2 293,835 + HMPREF1078_RS05160 0.88 -0.6 293,964 - +0.0 293,964 - -0.0 293,971 - +1.6 294,097 + -0.3 294,097 + +0.2 294,099 + -0.5 294,100 - -0.1 294,144 + -0.5 294,145 - -2.5 294,156 + +0.1 294,161 - -0.9 294,163 - -0.2 294,210 - -1.3 294,246 - -0.2 294,246 - +1.2 294,247 + -0.6 294,276 - +0.5 294,320 - +0.2 294,415 + HMPREF1078_RS05165 0.15 +0.6 294,423 - HMPREF1078_RS05165 0.16 +0.3 294,460 - HMPREF1078_RS05165 0.20 -0.7 294,512 + HMPREF1078_RS05165 0.25 +0.7 294,656 + HMPREF1078_RS05165 0.40 +0.3 294,656 + HMPREF1078_RS05165 0.40 +0.6 294,697 + HMPREF1078_RS05165 0.44 +0.6 294,730 - HMPREF1078_RS05165 0.47 -0.7 294,733 + HMPREF1078_RS05165 0.47 +0.3 294,734 - HMPREF1078_RS05165 0.48 +0.2
Or see this region's nucleotide sequence