Experiment: RCM 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS03050 and HMPREF1078_RS03055 are separated by 4 nucleotides HMPREF1078_RS03055 and HMPREF1078_RS03060 are separated by 8 nucleotides HMPREF1078_RS03060 and HMPREF1078_RS03065 are separated by 135 nucleotides HMPREF1078_RS03065 and HMPREF1078_RS03070 are separated by 8 nucleotides
HMPREF1078_RS03050: HMPREF1078_RS03050 - hypothetical protein, at 719,728 to 730,944
_RS03050
HMPREF1078_RS03055: HMPREF1078_RS03055 - hypothetical protein, at 730,949 to 732,049
_RS03055
HMPREF1078_RS03060: HMPREF1078_RS03060 - hypothetical protein, at 732,058 to 732,594
_RS03060
HMPREF1078_RS03065: HMPREF1078_RS03065 - hypothetical protein, at 732,730 to 733,029
_RS03065
HMPREF1078_RS03070: HMPREF1078_RS03070 - hypothetical protein, at 733,038 to 733,460
_RS03070
Position (kb) 730
731
732
733 Strain fitness (log2 ratio) -2
-1
0
1
2 at 730.050 kb on + strand at 730.158 kb on + strand at 730.306 kb on - strand at 730.370 kb on + strand at 730.387 kb on + strand at 730.404 kb on + strand at 730.554 kb on - strand at 730.569 kb on + strand at 730.569 kb on + strand at 730.574 kb on - strand at 730.578 kb on + strand at 730.727 kb on - strand at 730.744 kb on - strand at 730.765 kb on + strand at 730.766 kb on - strand at 730.801 kb on + strand at 730.803 kb on + strand at 730.803 kb on + strand at 730.803 kb on + strand at 730.804 kb on - strand at 730.808 kb on + strand at 730.808 kb on + strand at 730.853 kb on - strand at 730.891 kb on + strand at 730.892 kb on - strand at 730.894 kb on - strand at 730.895 kb on + strand at 730.896 kb on - strand at 730.896 kb on - strand at 730.914 kb on - strand at 730.939 kb on - strand at 730.972 kb on + strand at 731.022 kb on + strand at 731.022 kb on + strand at 731.047 kb on + strand at 731.049 kb on + strand at 731.115 kb on + strand, within HMPREF1078_RS03055 at 731.150 kb on + strand, within HMPREF1078_RS03055 at 731.185 kb on + strand, within HMPREF1078_RS03055 at 731.185 kb on + strand, within HMPREF1078_RS03055 at 731.189 kb on + strand, within HMPREF1078_RS03055 at 731.189 kb on + strand, within HMPREF1078_RS03055 at 731.290 kb on + strand, within HMPREF1078_RS03055 at 731.295 kb on + strand, within HMPREF1078_RS03055 at 731.329 kb on + strand, within HMPREF1078_RS03055 at 731.333 kb on + strand, within HMPREF1078_RS03055 at 731.333 kb on + strand, within HMPREF1078_RS03055 at 731.377 kb on + strand, within HMPREF1078_RS03055 at 731.437 kb on + strand, within HMPREF1078_RS03055 at 731.510 kb on + strand, within HMPREF1078_RS03055 at 731.510 kb on + strand, within HMPREF1078_RS03055 at 731.765 kb on + strand, within HMPREF1078_RS03055 at 731.858 kb on + strand, within HMPREF1078_RS03055 at 731.871 kb on - strand, within HMPREF1078_RS03055 at 731.872 kb on + strand, within HMPREF1078_RS03055 at 731.968 kb on + strand at 731.974 kb on + strand at 732.063 kb on + strand at 732.088 kb on + strand at 732.164 kb on + strand, within HMPREF1078_RS03060 at 732.252 kb on + strand, within HMPREF1078_RS03060 at 732.352 kb on + strand, within HMPREF1078_RS03060 at 732.396 kb on + strand, within HMPREF1078_RS03060 at 732.441 kb on + strand, within HMPREF1078_RS03060 at 732.455 kb on + strand, within HMPREF1078_RS03060 at 732.580 kb on + strand at 732.580 kb on + strand at 732.594 kb on + strand at 732.600 kb on + strand at 732.624 kb on + strand at 732.673 kb on + strand at 732.675 kb on + strand at 732.729 kb on + strand at 732.729 kb on + strand at 732.729 kb on + strand at 732.729 kb on + strand at 732.729 kb on + strand at 732.729 kb on + strand at 732.729 kb on + strand at 732.869 kb on + strand, within HMPREF1078_RS03065 at 732.888 kb on + strand, within HMPREF1078_RS03065 at 732.901 kb on + strand, within HMPREF1078_RS03065 at 732.901 kb on + strand, within HMPREF1078_RS03065 at 732.902 kb on - strand, within HMPREF1078_RS03065 at 732.903 kb on + strand, within HMPREF1078_RS03065 at 732.914 kb on + strand, within HMPREF1078_RS03065 at 732.914 kb on + strand, within HMPREF1078_RS03065 at 732.919 kb on + strand, within HMPREF1078_RS03065 at 732.920 kb on - strand, within HMPREF1078_RS03065 at 732.923 kb on + strand, within HMPREF1078_RS03065 at 732.924 kb on - strand, within HMPREF1078_RS03065 at 732.933 kb on + strand, within HMPREF1078_RS03065 at 732.936 kb on - strand, within HMPREF1078_RS03065 at 732.936 kb on - strand, within HMPREF1078_RS03065 at 733.027 kb on + strand at 733.027 kb on + strand at 733.032 kb on + strand at 733.033 kb on - strand at 733.037 kb on + strand at 733.038 kb on - strand at 733.038 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCM 1 x (C) remove 730,050 + +0.1 730,158 + +2.1 730,306 - +0.7 730,370 + -1.1 730,387 + -1.1 730,404 + +0.0 730,554 - +0.0 730,569 + +0.1 730,569 + -0.3 730,574 - +0.1 730,578 + -0.8 730,727 - -0.6 730,744 - -1.6 730,765 + +0.7 730,766 - -2.0 730,801 + +0.0 730,803 + -0.5 730,803 + +0.3 730,803 + -0.6 730,804 - +0.0 730,808 + -0.4 730,808 + +1.0 730,853 - +0.3 730,891 + -0.3 730,892 - -0.2 730,894 - +0.3 730,895 + -0.2 730,896 - -0.6 730,896 - +0.9 730,914 - +0.7 730,939 - -0.8 730,972 + -0.1 731,022 + -0.6 731,022 + -2.1 731,047 + +1.4 731,049 + +0.6 731,115 + HMPREF1078_RS03055 0.15 -1.5 731,150 + HMPREF1078_RS03055 0.18 -1.8 731,185 + HMPREF1078_RS03055 0.21 -1.8 731,185 + HMPREF1078_RS03055 0.21 -1.6 731,189 + HMPREF1078_RS03055 0.22 -0.4 731,189 + HMPREF1078_RS03055 0.22 -1.1 731,290 + HMPREF1078_RS03055 0.31 +1.6 731,295 + HMPREF1078_RS03055 0.31 -1.2 731,329 + HMPREF1078_RS03055 0.35 +0.4 731,333 + HMPREF1078_RS03055 0.35 -1.5 731,333 + HMPREF1078_RS03055 0.35 +0.6 731,377 + HMPREF1078_RS03055 0.39 +0.1 731,437 + HMPREF1078_RS03055 0.44 -1.1 731,510 + HMPREF1078_RS03055 0.51 -0.0 731,510 + HMPREF1078_RS03055 0.51 +0.0 731,765 + HMPREF1078_RS03055 0.74 -0.2 731,858 + HMPREF1078_RS03055 0.83 +0.5 731,871 - HMPREF1078_RS03055 0.84 +0.3 731,872 + HMPREF1078_RS03055 0.84 -0.3 731,968 + +0.7 731,974 + -0.5 732,063 + -0.3 732,088 + -0.8 732,164 + HMPREF1078_RS03060 0.20 +0.3 732,252 + HMPREF1078_RS03060 0.36 -0.7 732,352 + HMPREF1078_RS03060 0.55 +0.2 732,396 + HMPREF1078_RS03060 0.63 -0.9 732,441 + HMPREF1078_RS03060 0.71 +1.9 732,455 + HMPREF1078_RS03060 0.74 +0.3 732,580 + -0.4 732,580 + -0.3 732,594 + +0.2 732,600 + -1.1 732,624 + -0.7 732,673 + -1.1 732,675 + -0.7 732,729 + -0.2 732,729 + -1.6 732,729 + +0.9 732,729 + +1.0 732,729 + +1.0 732,729 + -0.4 732,729 + +0.0 732,869 + HMPREF1078_RS03065 0.46 +1.9 732,888 + HMPREF1078_RS03065 0.53 -0.2 732,901 + HMPREF1078_RS03065 0.57 -1.1 732,901 + HMPREF1078_RS03065 0.57 -0.7 732,902 - HMPREF1078_RS03065 0.57 -0.4 732,903 + HMPREF1078_RS03065 0.58 -0.0 732,914 + HMPREF1078_RS03065 0.61 +0.0 732,914 + HMPREF1078_RS03065 0.61 +0.0 732,919 + HMPREF1078_RS03065 0.63 -1.3 732,920 - HMPREF1078_RS03065 0.63 -0.5 732,923 + HMPREF1078_RS03065 0.64 +0.4 732,924 - HMPREF1078_RS03065 0.65 -0.5 732,933 + HMPREF1078_RS03065 0.68 +0.7 732,936 - HMPREF1078_RS03065 0.69 -0.2 732,936 - HMPREF1078_RS03065 0.69 +0.0 733,027 + +0.3 733,027 + -0.7 733,032 + +0.8 733,033 - +1.4 733,037 + -0.3 733,038 - -1.0 733,038 - -1.0
Or see this region's nucleotide sequence