Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS10690

Experiment: MRS 1 x (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS10685 and HMPREF1078_RS10690 are separated by 388 nucleotidesHMPREF1078_RS10690 and HMPREF1078_RS10695 are separated by 23 nucleotides HMPREF1078_RS10685: HMPREF1078_RS10685 - tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB, at 42,620 to 43,942 _RS10685 HMPREF1078_RS10690: HMPREF1078_RS10690 - lysophospholipid acyltransferase family protein, at 44,331 to 45,239 _RS10690 HMPREF1078_RS10695: HMPREF1078_RS10695 - glycosyltransferase family 2 protein, at 45,263 to 46,327 _RS10695 Position (kb) 44 45 46Strain fitness (log2 ratio) -1 0 1at 43.480 kb on + strand, within HMPREF1078_RS10685at 43.561 kb on + strand, within HMPREF1078_RS10685at 43.829 kb on + strandat 43.829 kb on + strandat 43.920 kb on + strandat 43.923 kb on + strandat 43.935 kb on + strandat 44.157 kb on + strandat 44.291 kb on + strandat 44.291 kb on + strandat 45.200 kb on + strandat 45.262 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MRS 1 x (C)
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43,480 + HMPREF1078_RS10685 0.65 +0.8
43,561 + HMPREF1078_RS10685 0.71 +0.1
43,829 + +0.0
43,829 + -0.1
43,920 + -0.8
43,923 + -0.8
43,935 + -1.1
44,157 + -0.2
44,291 + -0.7
44,291 + -0.4
45,200 + +0.1
45,262 + +0.0

Or see this region's nucleotide sequence