Experiment: MRS 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS05495 and HMPREF1078_RS05500 are separated by 3 nucleotides HMPREF1078_RS05500 and HMPREF1078_RS05505 are separated by 88 nucleotides
HMPREF1078_RS05495: HMPREF1078_RS05495 - type IX secretion system membrane protein PorP/SprF, at 387,936 to 388,886
_RS05495
HMPREF1078_RS05500: HMPREF1078_RS05500 - SUMF1/EgtB/PvdO family nonheme iron enzyme, at 388,890 to 390,317
_RS05500
HMPREF1078_RS05505: HMPREF1078_RS05505 - gliding motility protein GldL, at 390,406 to 391,437
_RS05505
Position (kb) 388
389
390
391 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 387.935 kb on + strand at 387.956 kb on + strand at 387.956 kb on + strand at 388.053 kb on + strand, within HMPREF1078_RS05495 at 388.104 kb on + strand, within HMPREF1078_RS05495 at 388.104 kb on + strand, within HMPREF1078_RS05495 at 388.105 kb on - strand, within HMPREF1078_RS05495 at 388.229 kb on + strand, within HMPREF1078_RS05495 at 388.229 kb on + strand, within HMPREF1078_RS05495 at 388.229 kb on + strand, within HMPREF1078_RS05495 at 388.229 kb on + strand, within HMPREF1078_RS05495 at 388.230 kb on - strand, within HMPREF1078_RS05495 at 388.230 kb on - strand, within HMPREF1078_RS05495 at 388.230 kb on - strand, within HMPREF1078_RS05495 at 388.249 kb on - strand, within HMPREF1078_RS05495 at 388.255 kb on - strand, within HMPREF1078_RS05495 at 388.255 kb on - strand, within HMPREF1078_RS05495 at 388.434 kb on + strand, within HMPREF1078_RS05495 at 388.495 kb on + strand, within HMPREF1078_RS05495 at 388.518 kb on + strand, within HMPREF1078_RS05495 at 388.518 kb on + strand, within HMPREF1078_RS05495 at 388.551 kb on + strand, within HMPREF1078_RS05495 at 388.578 kb on + strand, within HMPREF1078_RS05495 at 388.579 kb on - strand, within HMPREF1078_RS05495 at 388.579 kb on - strand, within HMPREF1078_RS05495 at 388.585 kb on + strand, within HMPREF1078_RS05495 at 388.585 kb on + strand, within HMPREF1078_RS05495 at 388.597 kb on + strand, within HMPREF1078_RS05495 at 388.598 kb on - strand, within HMPREF1078_RS05495 at 388.637 kb on - strand, within HMPREF1078_RS05495 at 388.653 kb on + strand, within HMPREF1078_RS05495 at 388.653 kb on + strand, within HMPREF1078_RS05495 at 388.654 kb on - strand, within HMPREF1078_RS05495 at 388.656 kb on - strand, within HMPREF1078_RS05495 at 388.656 kb on - strand, within HMPREF1078_RS05495 at 388.658 kb on + strand, within HMPREF1078_RS05495 at 388.659 kb on - strand, within HMPREF1078_RS05495 at 388.660 kb on - strand, within HMPREF1078_RS05495 at 388.714 kb on + strand, within HMPREF1078_RS05495 at 388.715 kb on - strand, within HMPREF1078_RS05495 at 388.741 kb on + strand, within HMPREF1078_RS05495 at 388.741 kb on + strand, within HMPREF1078_RS05495 at 388.746 kb on + strand, within HMPREF1078_RS05495 at 388.746 kb on + strand, within HMPREF1078_RS05495 at 388.753 kb on - strand, within HMPREF1078_RS05495 at 388.769 kb on + strand, within HMPREF1078_RS05495 at 388.770 kb on - strand, within HMPREF1078_RS05495 at 388.814 kb on - strand at 388.821 kb on + strand at 388.821 kb on + strand at 388.821 kb on + strand at 388.865 kb on + strand at 388.865 kb on + strand at 388.866 kb on - strand at 388.874 kb on - strand at 388.877 kb on + strand at 388.877 kb on + strand at 388.878 kb on - strand at 388.878 kb on - strand at 388.879 kb on + strand at 388.879 kb on + strand at 388.879 kb on + strand at 388.880 kb on - strand at 388.883 kb on - strand at 388.883 kb on - strand at 388.883 kb on - strand at 388.884 kb on + strand at 388.884 kb on + strand at 388.884 kb on + strand at 388.884 kb on + strand at 388.884 kb on + strand at 388.884 kb on + strand at 388.884 kb on + strand at 388.884 kb on + strand at 388.884 kb on + strand at 388.885 kb on - strand at 388.885 kb on - strand at 388.885 kb on - strand at 388.885 kb on - strand at 388.885 kb on - strand at 388.885 kb on - strand at 388.885 kb on - strand at 388.885 kb on - strand at 388.885 kb on - strand at 388.885 kb on - strand at 388.885 kb on - strand at 388.887 kb on + strand at 388.887 kb on + strand at 388.888 kb on - strand at 388.888 kb on - strand at 388.888 kb on - strand at 388.888 kb on - strand at 388.890 kb on - strand at 388.907 kb on - strand at 388.907 kb on - strand at 388.907 kb on - strand at 388.907 kb on - strand at 388.907 kb on - strand at 388.909 kb on + strand at 388.931 kb on + strand at 388.931 kb on + strand at 388.931 kb on + strand at 388.931 kb on - strand at 388.981 kb on + strand at 389.155 kb on - strand, within HMPREF1078_RS05500 at 389.218 kb on - strand, within HMPREF1078_RS05500 at 389.218 kb on - strand, within HMPREF1078_RS05500 at 389.252 kb on + strand, within HMPREF1078_RS05500 at 389.253 kb on - strand, within HMPREF1078_RS05500 at 389.349 kb on + strand, within HMPREF1078_RS05500 at 389.349 kb on + strand, within HMPREF1078_RS05500 at 389.403 kb on + strand, within HMPREF1078_RS05500 at 389.419 kb on - strand, within HMPREF1078_RS05500 at 389.426 kb on + strand, within HMPREF1078_RS05500 at 389.426 kb on + strand, within HMPREF1078_RS05500 at 389.426 kb on + strand, within HMPREF1078_RS05500 at 389.426 kb on + strand, within HMPREF1078_RS05500 at 389.427 kb on - strand, within HMPREF1078_RS05500 at 389.535 kb on + strand, within HMPREF1078_RS05500 at 389.535 kb on + strand, within HMPREF1078_RS05500 at 389.624 kb on + strand, within HMPREF1078_RS05500 at 389.625 kb on - strand, within HMPREF1078_RS05500 at 389.629 kb on - strand, within HMPREF1078_RS05500 at 389.682 kb on + strand, within HMPREF1078_RS05500 at 389.682 kb on + strand, within HMPREF1078_RS05500 at 389.682 kb on + strand, within HMPREF1078_RS05500 at 389.682 kb on + strand, within HMPREF1078_RS05500 at 389.683 kb on - strand, within HMPREF1078_RS05500 at 389.683 kb on - strand, within HMPREF1078_RS05500 at 389.684 kb on + strand, within HMPREF1078_RS05500 at 389.684 kb on + strand, within HMPREF1078_RS05500 at 389.684 kb on + strand, within HMPREF1078_RS05500 at 389.685 kb on - strand, within HMPREF1078_RS05500 at 389.685 kb on - strand, within HMPREF1078_RS05500 at 389.685 kb on - strand, within HMPREF1078_RS05500 at 389.690 kb on + strand, within HMPREF1078_RS05500 at 389.690 kb on + strand, within HMPREF1078_RS05500 at 389.690 kb on + strand, within HMPREF1078_RS05500 at 389.690 kb on + strand, within HMPREF1078_RS05500 at 389.690 kb on + strand, within HMPREF1078_RS05500 at 389.690 kb on + strand, within HMPREF1078_RS05500 at 389.690 kb on + strand, within HMPREF1078_RS05500 at 389.691 kb on - strand, within HMPREF1078_RS05500 at 389.691 kb on - strand, within HMPREF1078_RS05500 at 389.691 kb on - strand, within HMPREF1078_RS05500 at 389.691 kb on - strand, within HMPREF1078_RS05500 at 389.691 kb on - strand, within HMPREF1078_RS05500 at 389.694 kb on + strand, within HMPREF1078_RS05500 at 389.695 kb on - strand, within HMPREF1078_RS05500 at 389.731 kb on + strand, within HMPREF1078_RS05500 at 389.731 kb on + strand, within HMPREF1078_RS05500 at 389.768 kb on - strand, within HMPREF1078_RS05500 at 389.859 kb on + strand, within HMPREF1078_RS05500 at 389.859 kb on + strand, within HMPREF1078_RS05500 at 389.892 kb on + strand, within HMPREF1078_RS05500 at 389.893 kb on - strand, within HMPREF1078_RS05500 at 389.893 kb on - strand, within HMPREF1078_RS05500 at 389.963 kb on + strand, within HMPREF1078_RS05500 at 389.963 kb on + strand, within HMPREF1078_RS05500 at 389.967 kb on + strand, within HMPREF1078_RS05500 at 389.967 kb on + strand, within HMPREF1078_RS05500 at 389.967 kb on + strand, within HMPREF1078_RS05500 at 389.968 kb on - strand, within HMPREF1078_RS05500 at 389.968 kb on - strand, within HMPREF1078_RS05500 at 389.969 kb on + strand, within HMPREF1078_RS05500 at 389.970 kb on - strand, within HMPREF1078_RS05500 at 390.127 kb on - strand, within HMPREF1078_RS05500 at 390.150 kb on + strand, within HMPREF1078_RS05500 at 390.172 kb on + strand, within HMPREF1078_RS05500 at 390.255 kb on + strand at 390.255 kb on + strand at 390.255 kb on + strand at 390.255 kb on + strand at 390.256 kb on - strand at 390.256 kb on - strand at 390.256 kb on - strand at 390.347 kb on - strand at 390.358 kb on - strand at 390.359 kb on + strand at 390.360 kb on - strand at 390.360 kb on - strand at 390.364 kb on + strand at 390.364 kb on + strand at 390.365 kb on - strand at 390.366 kb on + strand at 390.366 kb on + strand at 390.379 kb on + strand at 390.381 kb on + strand at 390.388 kb on + strand at 390.391 kb on - strand at 390.401 kb on + strand at 390.447 kb on - strand at 390.451 kb on + strand at 390.453 kb on + strand at 390.453 kb on + strand at 390.474 kb on + strand at 390.475 kb on - strand at 390.475 kb on - strand at 390.477 kb on + strand at 390.479 kb on + strand at 390.480 kb on - strand at 390.500 kb on + strand at 390.500 kb on + strand at 390.500 kb on + strand at 390.565 kb on - strand, within HMPREF1078_RS05505 at 390.669 kb on + strand, within HMPREF1078_RS05505 at 390.669 kb on + strand, within HMPREF1078_RS05505 at 390.889 kb on + strand, within HMPREF1078_RS05505 at 390.890 kb on - strand, within HMPREF1078_RS05505 at 390.909 kb on + strand, within HMPREF1078_RS05505 at 390.909 kb on + strand, within HMPREF1078_RS05505 at 390.986 kb on - strand, within HMPREF1078_RS05505 at 390.988 kb on - strand, within HMPREF1078_RS05505 at 390.996 kb on + strand, within HMPREF1078_RS05505 at 391.098 kb on - strand, within HMPREF1078_RS05505 at 391.140 kb on + strand, within HMPREF1078_RS05505 at 391.140 kb on + strand, within HMPREF1078_RS05505 at 391.140 kb on + strand, within HMPREF1078_RS05505 at 391.140 kb on + strand, within HMPREF1078_RS05505 at 391.140 kb on + strand, within HMPREF1078_RS05505 at 391.141 kb on - strand, within HMPREF1078_RS05505 at 391.175 kb on - strand, within HMPREF1078_RS05505 at 391.257 kb on - strand, within HMPREF1078_RS05505 at 391.258 kb on + strand, within HMPREF1078_RS05505 at 391.258 kb on + strand, within HMPREF1078_RS05505 at 391.258 kb on + strand, within HMPREF1078_RS05505 at 391.259 kb on - strand, within HMPREF1078_RS05505 at 391.259 kb on - strand, within HMPREF1078_RS05505 at 391.279 kb on - strand, within HMPREF1078_RS05505
Per-strain Table
Position Strand Gene LocusTag Fraction MRS 1 x (C) remove 387,935 + -0.1 387,956 + -0.9 387,956 + -0.5 388,053 + HMPREF1078_RS05495 0.12 -2.5 388,104 + HMPREF1078_RS05495 0.18 -1.0 388,104 + HMPREF1078_RS05495 0.18 -0.3 388,105 - HMPREF1078_RS05495 0.18 -0.0 388,229 + HMPREF1078_RS05495 0.31 -1.0 388,229 + HMPREF1078_RS05495 0.31 -0.7 388,229 + HMPREF1078_RS05495 0.31 -0.7 388,229 + HMPREF1078_RS05495 0.31 -1.0 388,230 - HMPREF1078_RS05495 0.31 +0.3 388,230 - HMPREF1078_RS05495 0.31 +0.3 388,230 - HMPREF1078_RS05495 0.31 -0.5 388,249 - HMPREF1078_RS05495 0.33 -1.5 388,255 - HMPREF1078_RS05495 0.34 -1.6 388,255 - HMPREF1078_RS05495 0.34 -1.9 388,434 + HMPREF1078_RS05495 0.52 -1.1 388,495 + HMPREF1078_RS05495 0.59 -1.3 388,518 + HMPREF1078_RS05495 0.61 -0.3 388,518 + HMPREF1078_RS05495 0.61 +0.3 388,551 + HMPREF1078_RS05495 0.65 -1.5 388,578 + HMPREF1078_RS05495 0.68 -0.5 388,579 - HMPREF1078_RS05495 0.68 -0.0 388,579 - HMPREF1078_RS05495 0.68 -0.3 388,585 + HMPREF1078_RS05495 0.68 -1.4 388,585 + HMPREF1078_RS05495 0.68 -1.6 388,597 + HMPREF1078_RS05495 0.70 -1.1 388,598 - HMPREF1078_RS05495 0.70 -2.1 388,637 - HMPREF1078_RS05495 0.74 -1.0 388,653 + HMPREF1078_RS05495 0.75 -1.7 388,653 + HMPREF1078_RS05495 0.75 +0.3 388,654 - HMPREF1078_RS05495 0.75 -0.7 388,656 - HMPREF1078_RS05495 0.76 -0.3 388,656 - HMPREF1078_RS05495 0.76 -1.1 388,658 + HMPREF1078_RS05495 0.76 -0.5 388,659 - HMPREF1078_RS05495 0.76 -1.0 388,660 - HMPREF1078_RS05495 0.76 -2.0 388,714 + HMPREF1078_RS05495 0.82 -1.7 388,715 - HMPREF1078_RS05495 0.82 -1.6 388,741 + HMPREF1078_RS05495 0.85 -2.3 388,741 + HMPREF1078_RS05495 0.85 -1.7 388,746 + HMPREF1078_RS05495 0.85 -0.4 388,746 + HMPREF1078_RS05495 0.85 -1.1 388,753 - HMPREF1078_RS05495 0.86 -1.6 388,769 + HMPREF1078_RS05495 0.88 -0.7 388,770 - HMPREF1078_RS05495 0.88 -0.0 388,814 - -0.7 388,821 + -0.0 388,821 + -0.3 388,821 + -1.1 388,865 + -0.9 388,865 + -1.0 388,866 - -0.0 388,874 - -0.9 388,877 + -1.7 388,877 + -1.0 388,878 - -1.3 388,878 - -1.3 388,879 + -1.0 388,879 + -1.7 388,879 + -1.3 388,880 - -1.6 388,883 - -1.0 388,883 - -0.7 388,883 - -0.0 388,884 + -1.9 388,884 + -0.7 388,884 + -1.4 388,884 + -0.2 388,884 + -2.6 388,884 + -1.9 388,884 + -0.9 388,884 + -2.2 388,884 + -1.1 388,885 - -1.3 388,885 - -0.3 388,885 - -0.7 388,885 - -0.0 388,885 - -2.2 388,885 - -0.3 388,885 - -0.5 388,885 - -1.3 388,885 - -0.7 388,885 - -0.3 388,885 - -0.5 388,887 + -1.0 388,887 + -1.1 388,888 - -2.1 388,888 - -0.7 388,888 - -0.5 388,888 - -0.0 388,890 - -1.1 388,907 - -0.0 388,907 - -0.0 388,907 - -0.0 388,907 - -0.0 388,907 - -0.7 388,909 + -1.0 388,931 + -0.4 388,931 + -1.0 388,931 + -0.5 388,931 - -0.0 388,981 + +0.6 389,155 - HMPREF1078_RS05500 0.19 -0.0 389,218 - HMPREF1078_RS05500 0.23 +0.3 389,218 - HMPREF1078_RS05500 0.23 -0.1 389,252 + HMPREF1078_RS05500 0.25 -2.4 389,253 - HMPREF1078_RS05500 0.25 -1.6 389,349 + HMPREF1078_RS05500 0.32 -1.7 389,349 + HMPREF1078_RS05500 0.32 -0.7 389,403 + HMPREF1078_RS05500 0.36 -0.5 389,419 - HMPREF1078_RS05500 0.37 -1.3 389,426 + HMPREF1078_RS05500 0.38 +0.3 389,426 + HMPREF1078_RS05500 0.38 -1.9 389,426 + HMPREF1078_RS05500 0.38 +0.3 389,426 + HMPREF1078_RS05500 0.38 -1.0 389,427 - HMPREF1078_RS05500 0.38 -1.1 389,535 + HMPREF1078_RS05500 0.45 -3.1 389,535 + HMPREF1078_RS05500 0.45 +0.3 389,624 + HMPREF1078_RS05500 0.51 -0.0 389,625 - HMPREF1078_RS05500 0.51 -0.3 389,629 - HMPREF1078_RS05500 0.52 -1.9 389,682 + HMPREF1078_RS05500 0.55 -0.7 389,682 + HMPREF1078_RS05500 0.55 -0.3 389,682 + HMPREF1078_RS05500 0.55 -0.5 389,682 + HMPREF1078_RS05500 0.55 -1.7 389,683 - HMPREF1078_RS05500 0.56 -1.3 389,683 - HMPREF1078_RS05500 0.56 -0.7 389,684 + HMPREF1078_RS05500 0.56 -2.4 389,684 + HMPREF1078_RS05500 0.56 -0.0 389,684 + HMPREF1078_RS05500 0.56 -1.3 389,685 - HMPREF1078_RS05500 0.56 -1.7 389,685 - HMPREF1078_RS05500 0.56 -1.5 389,685 - HMPREF1078_RS05500 0.56 -1.4 389,690 + HMPREF1078_RS05500 0.56 -2.8 389,690 + HMPREF1078_RS05500 0.56 -2.1 389,690 + HMPREF1078_RS05500 0.56 -1.6 389,690 + HMPREF1078_RS05500 0.56 +0.3 389,690 + HMPREF1078_RS05500 0.56 -1.6 389,690 + HMPREF1078_RS05500 0.56 -2.4 389,690 + HMPREF1078_RS05500 0.56 -1.3 389,691 - HMPREF1078_RS05500 0.56 -0.3 389,691 - HMPREF1078_RS05500 0.56 -1.3 389,691 - HMPREF1078_RS05500 0.56 -0.3 389,691 - HMPREF1078_RS05500 0.56 -0.9 389,691 - HMPREF1078_RS05500 0.56 -0.3 389,694 + HMPREF1078_RS05500 0.56 -1.7 389,695 - HMPREF1078_RS05500 0.56 -0.3 389,731 + HMPREF1078_RS05500 0.59 -0.9 389,731 + HMPREF1078_RS05500 0.59 -0.0 389,768 - HMPREF1078_RS05500 0.61 -0.0 389,859 + HMPREF1078_RS05500 0.68 -1.3 389,859 + HMPREF1078_RS05500 0.68 -2.8 389,892 + HMPREF1078_RS05500 0.70 -1.1 389,893 - HMPREF1078_RS05500 0.70 +0.3 389,893 - HMPREF1078_RS05500 0.70 -0.6 389,963 + HMPREF1078_RS05500 0.75 -2.4 389,963 + HMPREF1078_RS05500 0.75 -1.9 389,967 + HMPREF1078_RS05500 0.75 -1.5 389,967 + HMPREF1078_RS05500 0.75 -2.3 389,967 + HMPREF1078_RS05500 0.75 -1.9 389,968 - HMPREF1078_RS05500 0.75 -1.9 389,968 - HMPREF1078_RS05500 0.75 -0.9 389,969 + HMPREF1078_RS05500 0.76 -2.6 389,970 - HMPREF1078_RS05500 0.76 -1.0 390,127 - HMPREF1078_RS05500 0.87 -2.0 390,150 + HMPREF1078_RS05500 0.88 -0.3 390,172 + HMPREF1078_RS05500 0.90 -0.5 390,255 + -2.3 390,255 + -0.3 390,255 + -0.5 390,255 + -2.1 390,256 - -1.4 390,256 - -0.7 390,256 - -0.0 390,347 - -0.9 390,358 - -0.9 390,359 + -3.0 390,360 - -1.1 390,360 - -1.8 390,364 + -2.0 390,364 + -0.9 390,365 - +0.3 390,366 + +0.9 390,366 + -2.9 390,379 + -1.6 390,381 + -2.1 390,388 + -0.5 390,391 - -0.7 390,401 + -0.7 390,447 - +0.3 390,451 + -1.6 390,453 + -1.3 390,453 + +0.7 390,474 + -0.5 390,475 - -0.9 390,475 - -0.5 390,477 + -2.3 390,479 + -0.7 390,480 - -0.3 390,500 + -0.4 390,500 + -0.7 390,500 + -1.7 390,565 - HMPREF1078_RS05505 0.15 -0.5 390,669 + HMPREF1078_RS05505 0.25 -2.5 390,669 + HMPREF1078_RS05505 0.25 -1.4 390,889 + HMPREF1078_RS05505 0.47 -2.0 390,890 - HMPREF1078_RS05505 0.47 +0.3 390,909 + HMPREF1078_RS05505 0.49 -1.4 390,909 + HMPREF1078_RS05505 0.49 -2.0 390,986 - HMPREF1078_RS05505 0.56 -1.9 390,988 - HMPREF1078_RS05505 0.56 -0.7 390,996 + HMPREF1078_RS05505 0.57 -1.9 391,098 - HMPREF1078_RS05505 0.67 -0.3 391,140 + HMPREF1078_RS05505 0.71 -1.9 391,140 + HMPREF1078_RS05505 0.71 -2.2 391,140 + HMPREF1078_RS05505 0.71 -2.1 391,140 + HMPREF1078_RS05505 0.71 -2.1 391,140 + HMPREF1078_RS05505 0.71 -2.4 391,141 - HMPREF1078_RS05505 0.71 -1.9 391,175 - HMPREF1078_RS05505 0.75 -0.3 391,257 - HMPREF1078_RS05505 0.82 -2.0 391,258 + HMPREF1078_RS05505 0.83 -1.4 391,258 + HMPREF1078_RS05505 0.83 -1.0 391,258 + HMPREF1078_RS05505 0.83 -1.4 391,259 - HMPREF1078_RS05505 0.83 -1.5 391,259 - HMPREF1078_RS05505 0.83 -1.1 391,279 - HMPREF1078_RS05505 0.85 +1.1
Or see this region's nucleotide sequence