Experiment: MRS 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS02060 and HMPREF1078_RS02065 are separated by 63 nucleotides HMPREF1078_RS02065 and HMPREF1078_RS02070 are separated by 21 nucleotides
HMPREF1078_RS02060: HMPREF1078_RS02060 - T9SS type A sorting domain-containing protein, at 506,482 to 509,835
_RS02060
HMPREF1078_RS02065: HMPREF1078_RS02065 - MFS transporter, at 509,899 to 511,341
_RS02065
HMPREF1078_RS02070: HMPREF1078_RS02070 - folylpolyglutamate synthase/dihydrofolate synthase family protein, at 511,363 to 512,670
_RS02070
Position (kb) 509
510
511
512 Strain fitness (log2 ratio) -2
-1
0
1
2 at 509.004 kb on + strand, within HMPREF1078_RS02060 at 509.130 kb on + strand, within HMPREF1078_RS02060 at 509.130 kb on + strand, within HMPREF1078_RS02060 at 509.154 kb on + strand, within HMPREF1078_RS02060 at 509.155 kb on - strand, within HMPREF1078_RS02060 at 509.188 kb on - strand, within HMPREF1078_RS02060 at 509.297 kb on - strand, within HMPREF1078_RS02060 at 509.332 kb on - strand, within HMPREF1078_RS02060 at 509.344 kb on - strand, within HMPREF1078_RS02060 at 509.344 kb on - strand, within HMPREF1078_RS02060 at 509.347 kb on + strand, within HMPREF1078_RS02060 at 509.347 kb on + strand, within HMPREF1078_RS02060 at 509.347 kb on + strand, within HMPREF1078_RS02060 at 509.348 kb on - strand, within HMPREF1078_RS02060 at 509.348 kb on - strand, within HMPREF1078_RS02060 at 509.348 kb on - strand, within HMPREF1078_RS02060 at 509.348 kb on - strand, within HMPREF1078_RS02060 at 509.348 kb on - strand, within HMPREF1078_RS02060 at 509.368 kb on + strand, within HMPREF1078_RS02060 at 509.369 kb on - strand, within HMPREF1078_RS02060 at 509.371 kb on + strand, within HMPREF1078_RS02060 at 509.371 kb on + strand, within HMPREF1078_RS02060 at 509.372 kb on - strand, within HMPREF1078_RS02060 at 509.373 kb on + strand, within HMPREF1078_RS02060 at 509.447 kb on - strand, within HMPREF1078_RS02060 at 509.505 kb on - strand at 509.551 kb on + strand at 509.552 kb on - strand at 509.552 kb on - strand at 509.604 kb on - strand at 509.676 kb on + strand at 509.677 kb on - strand at 509.677 kb on - strand at 509.677 kb on - strand at 509.680 kb on + strand at 509.680 kb on + strand at 509.713 kb on - strand at 509.713 kb on - strand at 509.732 kb on - strand at 509.748 kb on - strand at 509.760 kb on + strand at 509.779 kb on - strand at 509.784 kb on + strand at 509.785 kb on - strand at 509.785 kb on - strand at 509.788 kb on + strand at 509.788 kb on + strand at 509.788 kb on + strand at 509.788 kb on + strand at 509.789 kb on - strand at 509.789 kb on - strand at 509.811 kb on + strand at 509.811 kb on + strand at 509.812 kb on - strand at 509.816 kb on - strand at 509.873 kb on - strand at 509.873 kb on - strand at 509.882 kb on + strand at 509.887 kb on - strand at 509.900 kb on + strand at 509.901 kb on - strand at 510.020 kb on - strand at 510.074 kb on + strand, within HMPREF1078_RS02065 at 510.084 kb on + strand, within HMPREF1078_RS02065 at 510.105 kb on + strand, within HMPREF1078_RS02065 at 510.111 kb on - strand, within HMPREF1078_RS02065 at 510.111 kb on - strand, within HMPREF1078_RS02065 at 510.134 kb on - strand, within HMPREF1078_RS02065 at 510.135 kb on + strand, within HMPREF1078_RS02065 at 510.137 kb on + strand, within HMPREF1078_RS02065 at 510.175 kb on + strand, within HMPREF1078_RS02065 at 510.185 kb on + strand, within HMPREF1078_RS02065 at 510.284 kb on - strand, within HMPREF1078_RS02065 at 510.337 kb on - strand, within HMPREF1078_RS02065 at 510.341 kb on - strand, within HMPREF1078_RS02065 at 510.348 kb on + strand, within HMPREF1078_RS02065 at 510.348 kb on + strand, within HMPREF1078_RS02065 at 510.349 kb on - strand, within HMPREF1078_RS02065 at 510.360 kb on + strand, within HMPREF1078_RS02065 at 510.395 kb on + strand, within HMPREF1078_RS02065 at 510.396 kb on - strand, within HMPREF1078_RS02065 at 510.419 kb on - strand, within HMPREF1078_RS02065 at 510.426 kb on + strand, within HMPREF1078_RS02065 at 510.426 kb on + strand, within HMPREF1078_RS02065 at 510.537 kb on - strand, within HMPREF1078_RS02065 at 510.561 kb on + strand, within HMPREF1078_RS02065 at 510.562 kb on - strand, within HMPREF1078_RS02065 at 510.563 kb on + strand, within HMPREF1078_RS02065 at 510.582 kb on + strand, within HMPREF1078_RS02065 at 510.583 kb on - strand, within HMPREF1078_RS02065 at 510.583 kb on - strand, within HMPREF1078_RS02065 at 510.585 kb on + strand, within HMPREF1078_RS02065 at 510.585 kb on + strand, within HMPREF1078_RS02065 at 510.585 kb on + strand, within HMPREF1078_RS02065 at 510.586 kb on - strand, within HMPREF1078_RS02065 at 510.586 kb on - strand, within HMPREF1078_RS02065 at 510.586 kb on - strand, within HMPREF1078_RS02065 at 510.597 kb on + strand, within HMPREF1078_RS02065 at 510.598 kb on - strand, within HMPREF1078_RS02065 at 510.598 kb on - strand, within HMPREF1078_RS02065 at 510.683 kb on - strand, within HMPREF1078_RS02065 at 510.700 kb on + strand, within HMPREF1078_RS02065 at 510.711 kb on + strand, within HMPREF1078_RS02065 at 510.793 kb on - strand, within HMPREF1078_RS02065 at 510.793 kb on - strand, within HMPREF1078_RS02065 at 510.793 kb on - strand, within HMPREF1078_RS02065 at 510.797 kb on - strand, within HMPREF1078_RS02065 at 510.797 kb on - strand, within HMPREF1078_RS02065 at 510.929 kb on + strand, within HMPREF1078_RS02065 at 510.930 kb on - strand, within HMPREF1078_RS02065 at 510.930 kb on - strand, within HMPREF1078_RS02065 at 511.009 kb on + strand, within HMPREF1078_RS02065 at 511.010 kb on - strand, within HMPREF1078_RS02065 at 511.010 kb on - strand, within HMPREF1078_RS02065 at 511.011 kb on + strand, within HMPREF1078_RS02065 at 511.039 kb on - strand, within HMPREF1078_RS02065 at 511.075 kb on + strand, within HMPREF1078_RS02065 at 511.091 kb on - strand, within HMPREF1078_RS02065 at 511.099 kb on - strand, within HMPREF1078_RS02065 at 511.210 kb on + strand at 511.210 kb on + strand at 511.210 kb on + strand at 511.213 kb on + strand at 511.213 kb on + strand at 511.213 kb on + strand at 511.213 kb on - strand at 511.344 kb on + strand at 511.359 kb on + strand at 511.360 kb on - strand at 511.360 kb on - strand at 511.364 kb on + strand at 511.364 kb on + strand at 511.365 kb on - strand at 511.365 kb on - strand at 511.365 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MRS 1 x (C) remove 509,004 + HMPREF1078_RS02060 0.75 -0.3 509,130 + HMPREF1078_RS02060 0.79 -0.5 509,130 + HMPREF1078_RS02060 0.79 -1.0 509,154 + HMPREF1078_RS02060 0.80 -0.2 509,155 - HMPREF1078_RS02060 0.80 +0.5 509,188 - HMPREF1078_RS02060 0.81 +0.7 509,297 - HMPREF1078_RS02060 0.84 -0.4 509,332 - HMPREF1078_RS02060 0.85 -0.1 509,344 - HMPREF1078_RS02060 0.85 +0.0 509,344 - HMPREF1078_RS02060 0.85 +0.1 509,347 + HMPREF1078_RS02060 0.85 -1.5 509,347 + HMPREF1078_RS02060 0.85 +1.0 509,347 + HMPREF1078_RS02060 0.85 -1.2 509,348 - HMPREF1078_RS02060 0.85 -0.5 509,348 - HMPREF1078_RS02060 0.85 +0.5 509,348 - HMPREF1078_RS02060 0.85 -0.8 509,348 - HMPREF1078_RS02060 0.85 +1.0 509,348 - HMPREF1078_RS02060 0.85 -0.3 509,368 + HMPREF1078_RS02060 0.86 +0.2 509,369 - HMPREF1078_RS02060 0.86 -0.7 509,371 + HMPREF1078_RS02060 0.86 +1.2 509,371 + HMPREF1078_RS02060 0.86 -1.8 509,372 - HMPREF1078_RS02060 0.86 -1.1 509,373 + HMPREF1078_RS02060 0.86 -0.6 509,447 - HMPREF1078_RS02060 0.88 -0.2 509,505 - -0.5 509,551 + +0.4 509,552 - -1.3 509,552 - -0.2 509,604 - +0.0 509,676 + -1.4 509,677 - -0.6 509,677 - +0.8 509,677 - -1.8 509,680 + +0.0 509,680 + -0.3 509,713 - +0.7 509,713 - -0.9 509,732 - -1.0 509,748 - +0.3 509,760 + +0.7 509,779 - -0.0 509,784 + +0.6 509,785 - -0.8 509,785 - -0.5 509,788 + +1.2 509,788 + +0.3 509,788 + +0.2 509,788 + +0.6 509,789 - +0.2 509,789 - +0.8 509,811 + -0.3 509,811 + +0.7 509,812 - -1.2 509,816 - +0.0 509,873 - -0.0 509,873 - +0.3 509,882 + -0.8 509,887 - +0.6 509,900 + +1.2 509,901 - -0.6 510,020 - -0.8 510,074 + HMPREF1078_RS02065 0.12 +0.1 510,084 + HMPREF1078_RS02065 0.13 -2.0 510,105 + HMPREF1078_RS02065 0.14 -0.4 510,111 - HMPREF1078_RS02065 0.15 +1.6 510,111 - HMPREF1078_RS02065 0.15 -0.0 510,134 - HMPREF1078_RS02065 0.16 -0.3 510,135 + HMPREF1078_RS02065 0.16 -0.0 510,137 + HMPREF1078_RS02065 0.16 +0.6 510,175 + HMPREF1078_RS02065 0.19 +1.2 510,185 + HMPREF1078_RS02065 0.20 -0.3 510,284 - HMPREF1078_RS02065 0.27 +0.6 510,337 - HMPREF1078_RS02065 0.30 +0.2 510,341 - HMPREF1078_RS02065 0.31 -0.6 510,348 + HMPREF1078_RS02065 0.31 -0.1 510,348 + HMPREF1078_RS02065 0.31 -2.0 510,349 - HMPREF1078_RS02065 0.31 +0.7 510,360 + HMPREF1078_RS02065 0.32 +0.2 510,395 + HMPREF1078_RS02065 0.34 +1.1 510,396 - HMPREF1078_RS02065 0.34 -0.3 510,419 - HMPREF1078_RS02065 0.36 -0.1 510,426 + HMPREF1078_RS02065 0.37 -0.6 510,426 + HMPREF1078_RS02065 0.37 -0.8 510,537 - HMPREF1078_RS02065 0.44 -0.1 510,561 + HMPREF1078_RS02065 0.46 +0.8 510,562 - HMPREF1078_RS02065 0.46 +0.2 510,563 + HMPREF1078_RS02065 0.46 -0.5 510,582 + HMPREF1078_RS02065 0.47 -2.7 510,583 - HMPREF1078_RS02065 0.47 +0.7 510,583 - HMPREF1078_RS02065 0.47 +1.0 510,585 + HMPREF1078_RS02065 0.48 +0.4 510,585 + HMPREF1078_RS02065 0.48 +0.2 510,585 + HMPREF1078_RS02065 0.48 +0.8 510,586 - HMPREF1078_RS02065 0.48 +1.8 510,586 - HMPREF1078_RS02065 0.48 +0.7 510,586 - HMPREF1078_RS02065 0.48 +0.3 510,597 + HMPREF1078_RS02065 0.48 -0.9 510,598 - HMPREF1078_RS02065 0.48 -0.8 510,598 - HMPREF1078_RS02065 0.48 +0.7 510,683 - HMPREF1078_RS02065 0.54 +1.0 510,700 + HMPREF1078_RS02065 0.56 +0.5 510,711 + HMPREF1078_RS02065 0.56 -0.2 510,793 - HMPREF1078_RS02065 0.62 +1.1 510,793 - HMPREF1078_RS02065 0.62 +0.4 510,793 - HMPREF1078_RS02065 0.62 +0.6 510,797 - HMPREF1078_RS02065 0.62 -0.0 510,797 - HMPREF1078_RS02065 0.62 +0.4 510,929 + HMPREF1078_RS02065 0.71 -0.2 510,930 - HMPREF1078_RS02065 0.71 +0.5 510,930 - HMPREF1078_RS02065 0.71 -0.3 511,009 + HMPREF1078_RS02065 0.77 +0.3 511,010 - HMPREF1078_RS02065 0.77 +0.7 511,010 - HMPREF1078_RS02065 0.77 -0.0 511,011 + HMPREF1078_RS02065 0.77 -0.6 511,039 - HMPREF1078_RS02065 0.79 +0.3 511,075 + HMPREF1078_RS02065 0.81 +1.3 511,091 - HMPREF1078_RS02065 0.83 -0.2 511,099 - HMPREF1078_RS02065 0.83 +0.1 511,210 + +0.2 511,210 + +0.4 511,210 + +0.8 511,213 + -0.7 511,213 + -0.1 511,213 + -0.5 511,213 - +1.2 511,344 + -0.6 511,359 + +1.4 511,360 - -1.0 511,360 - +0.4 511,364 + +0.3 511,364 + +1.5 511,365 - +1.7 511,365 - -0.8 511,365 - -0.4
Or see this region's nucleotide sequence