Experiment: MRS 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS01695 and HMPREF1078_RS01700 are separated by 73 nucleotides HMPREF1078_RS01700 and HMPREF1078_RS01705 are separated by 110 nucleotides HMPREF1078_RS01705 and HMPREF1078_RS01710 are separated by 100 nucleotides
HMPREF1078_RS01695: HMPREF1078_RS01695 - four helix bundle protein, at 426,455 to 426,820
_RS01695
HMPREF1078_RS01700: HMPREF1078_RS01700 - adenylyl-sulfate kinase, at 426,894 to 427,469
_RS01700
HMPREF1078_RS01705: HMPREF1078_RS01705 - sulfate adenylyltransferase subunit CysD, at 427,580 to 428,488
_RS01705
HMPREF1078_RS01710: HMPREF1078_RS01710 - sulfate adenylyltransferase subunit CysN, at 428,589 to 430,052
_RS01710
Position (kb) 427
428
429 Strain fitness (log2 ratio) -2
-1
0
1
2 at 426.632 kb on - strand, within HMPREF1078_RS01695 at 426.643 kb on + strand, within HMPREF1078_RS01695 at 426.646 kb on + strand, within HMPREF1078_RS01695 at 426.685 kb on + strand, within HMPREF1078_RS01695 at 426.685 kb on + strand, within HMPREF1078_RS01695 at 426.685 kb on + strand, within HMPREF1078_RS01695 at 426.685 kb on + strand, within HMPREF1078_RS01695 at 426.685 kb on + strand, within HMPREF1078_RS01695 at 426.685 kb on + strand, within HMPREF1078_RS01695 at 426.686 kb on - strand, within HMPREF1078_RS01695 at 426.686 kb on - strand, within HMPREF1078_RS01695 at 426.686 kb on - strand, within HMPREF1078_RS01695 at 426.738 kb on + strand, within HMPREF1078_RS01695 at 426.776 kb on - strand, within HMPREF1078_RS01695 at 426.799 kb on + strand at 426.815 kb on - strand at 426.828 kb on - strand at 426.828 kb on - strand at 426.869 kb on + strand at 426.876 kb on + strand at 426.876 kb on + strand at 426.876 kb on + strand at 426.876 kb on + strand at 426.881 kb on + strand at 426.882 kb on - strand at 427.176 kb on - strand, within HMPREF1078_RS01700 at 427.214 kb on + strand, within HMPREF1078_RS01700 at 427.215 kb on - strand, within HMPREF1078_RS01700 at 427.215 kb on - strand, within HMPREF1078_RS01700 at 427.243 kb on + strand, within HMPREF1078_RS01700 at 427.243 kb on + strand, within HMPREF1078_RS01700 at 427.244 kb on - strand, within HMPREF1078_RS01700 at 427.296 kb on + strand, within HMPREF1078_RS01700 at 427.512 kb on - strand at 427.531 kb on + strand at 427.531 kb on + strand at 427.531 kb on + strand at 427.532 kb on - strand at 427.533 kb on + strand at 427.533 kb on + strand at 427.536 kb on + strand at 427.549 kb on + strand at 427.576 kb on + strand at 427.576 kb on + strand at 427.576 kb on + strand at 427.576 kb on + strand at 427.576 kb on + strand at 427.576 kb on + strand at 427.577 kb on - strand at 427.592 kb on - strand at 427.596 kb on + strand at 427.606 kb on - strand at 427.627 kb on + strand at 427.627 kb on + strand at 427.627 kb on + strand at 427.647 kb on + strand at 427.647 kb on + strand at 427.680 kb on - strand, within HMPREF1078_RS01705 at 427.680 kb on - strand, within HMPREF1078_RS01705 at 427.878 kb on + strand, within HMPREF1078_RS01705 at 427.951 kb on + strand, within HMPREF1078_RS01705 at 427.957 kb on + strand, within HMPREF1078_RS01705 at 428.020 kb on + strand, within HMPREF1078_RS01705 at 428.020 kb on + strand, within HMPREF1078_RS01705 at 428.020 kb on + strand, within HMPREF1078_RS01705 at 428.020 kb on + strand, within HMPREF1078_RS01705 at 428.021 kb on - strand, within HMPREF1078_RS01705 at 428.021 kb on - strand, within HMPREF1078_RS01705 at 428.090 kb on + strand, within HMPREF1078_RS01705 at 428.168 kb on + strand, within HMPREF1078_RS01705 at 428.168 kb on + strand, within HMPREF1078_RS01705 at 428.168 kb on + strand, within HMPREF1078_RS01705 at 428.169 kb on - strand, within HMPREF1078_RS01705 at 428.169 kb on - strand, within HMPREF1078_RS01705 at 428.171 kb on - strand, within HMPREF1078_RS01705 at 428.205 kb on - strand, within HMPREF1078_RS01705 at 428.220 kb on + strand, within HMPREF1078_RS01705 at 428.283 kb on - strand, within HMPREF1078_RS01705 at 428.310 kb on + strand, within HMPREF1078_RS01705 at 428.321 kb on - strand, within HMPREF1078_RS01705 at 428.480 kb on + strand at 428.588 kb on + strand at 428.589 kb on - strand at 428.603 kb on + strand at 428.604 kb on - strand at 428.605 kb on + strand at 428.722 kb on + strand at 428.724 kb on + strand at 428.724 kb on + strand at 428.724 kb on + strand at 428.725 kb on + strand at 428.857 kb on - strand, within HMPREF1078_RS01710 at 428.919 kb on + strand, within HMPREF1078_RS01710 at 428.919 kb on + strand, within HMPREF1078_RS01710 at 428.919 kb on + strand, within HMPREF1078_RS01710 at 428.919 kb on + strand, within HMPREF1078_RS01710 at 429.015 kb on - strand, within HMPREF1078_RS01710 at 429.018 kb on + strand, within HMPREF1078_RS01710 at 429.019 kb on - strand, within HMPREF1078_RS01710 at 429.034 kb on + strand, within HMPREF1078_RS01710 at 429.035 kb on - strand, within HMPREF1078_RS01710 at 429.038 kb on + strand, within HMPREF1078_RS01710 at 429.038 kb on + strand, within HMPREF1078_RS01710 at 429.215 kb on + strand, within HMPREF1078_RS01710 at 429.266 kb on + strand, within HMPREF1078_RS01710 at 429.312 kb on + strand, within HMPREF1078_RS01710 at 429.312 kb on + strand, within HMPREF1078_RS01710 at 429.312 kb on + strand, within HMPREF1078_RS01710 at 429.313 kb on - strand, within HMPREF1078_RS01710 at 429.368 kb on + strand, within HMPREF1078_RS01710 at 429.401 kb on - strand, within HMPREF1078_RS01710 at 429.459 kb on + strand, within HMPREF1078_RS01710 at 429.459 kb on + strand, within HMPREF1078_RS01710
Per-strain Table
Position Strand Gene LocusTag Fraction MRS 1 x (C) remove 426,632 - HMPREF1078_RS01695 0.48 +1.1 426,643 + HMPREF1078_RS01695 0.51 +0.3 426,646 + HMPREF1078_RS01695 0.52 -0.6 426,685 + HMPREF1078_RS01695 0.63 +1.2 426,685 + HMPREF1078_RS01695 0.63 -2.2 426,685 + HMPREF1078_RS01695 0.63 -0.5 426,685 + HMPREF1078_RS01695 0.63 -0.6 426,685 + HMPREF1078_RS01695 0.63 -0.1 426,685 + HMPREF1078_RS01695 0.63 +0.7 426,686 - HMPREF1078_RS01695 0.63 -2.3 426,686 - HMPREF1078_RS01695 0.63 -0.2 426,686 - HMPREF1078_RS01695 0.63 +0.8 426,738 + HMPREF1078_RS01695 0.77 -0.7 426,776 - HMPREF1078_RS01695 0.88 +0.2 426,799 + +0.1 426,815 - +0.2 426,828 - +0.8 426,828 - +1.1 426,869 + -0.6 426,876 + +1.1 426,876 + -0.1 426,876 + +0.1 426,876 + +1.5 426,881 + -2.4 426,882 - -1.3 427,176 - HMPREF1078_RS01700 0.49 +0.2 427,214 + HMPREF1078_RS01700 0.56 -0.4 427,215 - HMPREF1078_RS01700 0.56 -0.8 427,215 - HMPREF1078_RS01700 0.56 +1.2 427,243 + HMPREF1078_RS01700 0.61 -0.5 427,243 + HMPREF1078_RS01700 0.61 -1.7 427,244 - HMPREF1078_RS01700 0.61 +0.7 427,296 + HMPREF1078_RS01700 0.70 -0.6 427,512 - +1.7 427,531 + +0.2 427,531 + -0.2 427,531 + -1.0 427,532 - -0.9 427,533 + +0.9 427,533 + -0.5 427,536 + -0.7 427,549 + -0.3 427,576 + +0.1 427,576 + -1.0 427,576 + +0.5 427,576 + +1.8 427,576 + -0.1 427,576 + +0.4 427,577 - -0.8 427,592 - -1.1 427,596 + +1.3 427,606 - -0.6 427,627 + +0.3 427,627 + +0.0 427,627 + -0.4 427,647 + +0.3 427,647 + -0.2 427,680 - HMPREF1078_RS01705 0.11 -1.1 427,680 - HMPREF1078_RS01705 0.11 -1.6 427,878 + HMPREF1078_RS01705 0.33 -1.9 427,951 + HMPREF1078_RS01705 0.41 -1.8 427,957 + HMPREF1078_RS01705 0.41 -1.7 428,020 + HMPREF1078_RS01705 0.48 -1.9 428,020 + HMPREF1078_RS01705 0.48 -0.5 428,020 + HMPREF1078_RS01705 0.48 +0.4 428,020 + HMPREF1078_RS01705 0.48 -0.4 428,021 - HMPREF1078_RS01705 0.49 +0.5 428,021 - HMPREF1078_RS01705 0.49 -1.6 428,090 + HMPREF1078_RS01705 0.56 +0.3 428,168 + HMPREF1078_RS01705 0.65 -1.5 428,168 + HMPREF1078_RS01705 0.65 -0.7 428,168 + HMPREF1078_RS01705 0.65 -1.2 428,169 - HMPREF1078_RS01705 0.65 -0.9 428,169 - HMPREF1078_RS01705 0.65 -1.6 428,171 - HMPREF1078_RS01705 0.65 -0.8 428,205 - HMPREF1078_RS01705 0.69 -0.2 428,220 + HMPREF1078_RS01705 0.70 -0.3 428,283 - HMPREF1078_RS01705 0.77 -1.9 428,310 + HMPREF1078_RS01705 0.80 -1.9 428,321 - HMPREF1078_RS01705 0.82 +0.8 428,480 + -1.5 428,588 + +0.3 428,589 - -1.2 428,603 + +1.1 428,604 - +1.2 428,605 + +0.7 428,722 + +0.1 428,724 + +0.4 428,724 + -0.1 428,724 + -0.2 428,725 + -0.1 428,857 - HMPREF1078_RS01710 0.18 -2.6 428,919 + HMPREF1078_RS01710 0.23 -0.8 428,919 + HMPREF1078_RS01710 0.23 +0.1 428,919 + HMPREF1078_RS01710 0.23 -1.0 428,919 + HMPREF1078_RS01710 0.23 -1.3 429,015 - HMPREF1078_RS01710 0.29 -0.9 429,018 + HMPREF1078_RS01710 0.29 -0.6 429,019 - HMPREF1078_RS01710 0.29 -0.8 429,034 + HMPREF1078_RS01710 0.30 -0.7 429,035 - HMPREF1078_RS01710 0.30 -1.2 429,038 + HMPREF1078_RS01710 0.31 -1.0 429,038 + HMPREF1078_RS01710 0.31 +0.4 429,215 + HMPREF1078_RS01710 0.43 +0.5 429,266 + HMPREF1078_RS01710 0.46 +1.2 429,312 + HMPREF1078_RS01710 0.49 +0.1 429,312 + HMPREF1078_RS01710 0.49 +1.4 429,312 + HMPREF1078_RS01710 0.49 -1.5 429,313 - HMPREF1078_RS01710 0.49 -0.8 429,368 + HMPREF1078_RS01710 0.53 -0.0 429,401 - HMPREF1078_RS01710 0.55 -0.6 429,459 + HMPREF1078_RS01710 0.59 -1.8 429,459 + HMPREF1078_RS01710 0.59 -0.8
Or see this region's nucleotide sequence