Experiment: GAM 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS11210 and HMPREF1078_RS11215 are separated by 65 nucleotides HMPREF1078_RS11215 and HMPREF1078_RS11220 are separated by 90 nucleotides
HMPREF1078_RS11210: HMPREF1078_RS11210 - putative LPS assembly protein LptD, at 161,044 to 163,809
_RS11210
HMPREF1078_RS11215: HMPREF1078_RS11215 - HDIG domain-containing protein, at 163,875 to 164,417
_RS11215
HMPREF1078_RS11220: HMPREF1078_RS11220 - DUF1343 domain-containing protein, at 164,508 to 165,701
_RS11220
Position (kb) 163
164
165 Strain fitness (log2 ratio) -2
-1
0
1
2 at 163.833 kb on - strand at 164.046 kb on - strand, within HMPREF1078_RS11215 at 164.096 kb on + strand, within HMPREF1078_RS11215 at 164.096 kb on + strand, within HMPREF1078_RS11215 at 164.099 kb on + strand, within HMPREF1078_RS11215 at 164.111 kb on + strand, within HMPREF1078_RS11215 at 164.176 kb on + strand, within HMPREF1078_RS11215 at 164.190 kb on - strand, within HMPREF1078_RS11215 at 164.192 kb on - strand, within HMPREF1078_RS11215 at 164.192 kb on - strand, within HMPREF1078_RS11215 at 164.258 kb on + strand, within HMPREF1078_RS11215 at 164.259 kb on - strand, within HMPREF1078_RS11215 at 164.259 kb on - strand, within HMPREF1078_RS11215 at 164.279 kb on + strand, within HMPREF1078_RS11215 at 164.280 kb on - strand, within HMPREF1078_RS11215 at 164.313 kb on + strand, within HMPREF1078_RS11215 at 164.315 kb on + strand, within HMPREF1078_RS11215 at 164.315 kb on + strand, within HMPREF1078_RS11215 at 164.316 kb on - strand, within HMPREF1078_RS11215 at 164.344 kb on - strand, within HMPREF1078_RS11215 at 164.345 kb on + strand, within HMPREF1078_RS11215 at 164.389 kb on + strand at 164.417 kb on + strand at 164.449 kb on + strand at 164.492 kb on - strand at 164.492 kb on - strand at 164.494 kb on + strand at 164.507 kb on + strand at 164.508 kb on - strand at 164.519 kb on + strand at 164.519 kb on + strand at 164.520 kb on - strand at 164.526 kb on + strand at 164.615 kb on + strand at 164.615 kb on + strand at 164.616 kb on - strand at 164.616 kb on - strand at 164.659 kb on + strand, within HMPREF1078_RS11220 at 164.730 kb on - strand, within HMPREF1078_RS11220 at 164.738 kb on - strand, within HMPREF1078_RS11220 at 164.842 kb on + strand, within HMPREF1078_RS11220 at 164.932 kb on - strand, within HMPREF1078_RS11220 at 164.933 kb on + strand, within HMPREF1078_RS11220 at 164.933 kb on + strand, within HMPREF1078_RS11220 at 164.955 kb on + strand, within HMPREF1078_RS11220 at 164.956 kb on - strand, within HMPREF1078_RS11220 at 164.956 kb on - strand, within HMPREF1078_RS11220 at 165.089 kb on - strand, within HMPREF1078_RS11220 at 165.179 kb on - strand, within HMPREF1078_RS11220 at 165.303 kb on - strand, within HMPREF1078_RS11220 at 165.325 kb on - strand, within HMPREF1078_RS11220
Per-strain Table
Position Strand Gene LocusTag Fraction GAM 1 x (C) remove 163,833 - -0.7 164,046 - HMPREF1078_RS11215 0.31 +0.1 164,096 + HMPREF1078_RS11215 0.41 -1.9 164,096 + HMPREF1078_RS11215 0.41 -2.5 164,099 + HMPREF1078_RS11215 0.41 -1.9 164,111 + HMPREF1078_RS11215 0.43 -1.9 164,176 + HMPREF1078_RS11215 0.55 -0.4 164,190 - HMPREF1078_RS11215 0.58 -0.6 164,192 - HMPREF1078_RS11215 0.58 -0.9 164,192 - HMPREF1078_RS11215 0.58 -1.8 164,258 + HMPREF1078_RS11215 0.71 -1.2 164,259 - HMPREF1078_RS11215 0.71 -1.6 164,259 - HMPREF1078_RS11215 0.71 +1.8 164,279 + HMPREF1078_RS11215 0.74 -1.9 164,280 - HMPREF1078_RS11215 0.75 -1.8 164,313 + HMPREF1078_RS11215 0.81 -1.1 164,315 + HMPREF1078_RS11215 0.81 -0.3 164,315 + HMPREF1078_RS11215 0.81 -0.9 164,316 - HMPREF1078_RS11215 0.81 -0.6 164,344 - HMPREF1078_RS11215 0.86 -2.0 164,345 + HMPREF1078_RS11215 0.87 +0.0 164,389 + -1.1 164,417 + -0.1 164,449 + +0.9 164,492 - -1.2 164,492 - +0.7 164,494 + -0.2 164,507 + -1.2 164,508 - +0.8 164,519 + +0.1 164,519 + +0.7 164,520 - -0.3 164,526 + +0.2 164,615 + -0.4 164,615 + -0.4 164,616 - +0.3 164,616 - -1.0 164,659 + HMPREF1078_RS11220 0.13 +0.4 164,730 - HMPREF1078_RS11220 0.19 -0.0 164,738 - HMPREF1078_RS11220 0.19 +0.3 164,842 + HMPREF1078_RS11220 0.28 -0.1 164,932 - HMPREF1078_RS11220 0.36 +0.2 164,933 + HMPREF1078_RS11220 0.36 -0.1 164,933 + HMPREF1078_RS11220 0.36 -0.2 164,955 + HMPREF1078_RS11220 0.37 +1.1 164,956 - HMPREF1078_RS11220 0.38 -0.9 164,956 - HMPREF1078_RS11220 0.38 +1.2 165,089 - HMPREF1078_RS11220 0.49 +0.7 165,179 - HMPREF1078_RS11220 0.56 +0.1 165,303 - HMPREF1078_RS11220 0.67 -1.0 165,325 - HMPREF1078_RS11220 0.68 -0.2
Or see this region's nucleotide sequence