Experiment: GAM 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS09720 and HMPREF1078_RS09725 are separated by 88 nucleotides HMPREF1078_RS09725 and HMPREF1078_RS09730 are separated by 277 nucleotides HMPREF1078_RS09730 and HMPREF1078_RS09735 are separated by 297 nucleotides
HMPREF1078_RS09720: HMPREF1078_RS09720 - TonB-dependent receptor, at 541,279 to 543,162
_RS09720
HMPREF1078_RS09725: HMPREF1078_RS09725 - nickel-responsive transcriptional regulator NikR, at 543,251 to 543,652
_RS09725
HMPREF1078_RS09730: HMPREF1078_RS09730 - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase, at 543,930 to 544,175
_RS09730
HMPREF1078_RS09735: HMPREF1078_RS09735 - DMT family transporter, at 544,473 to 545,417
_RS09735
Position (kb) 543
544 Strain fitness (log2 ratio) -2
-1
0
1
2 at 542.331 kb on + strand, within HMPREF1078_RS09720 at 542.377 kb on - strand, within HMPREF1078_RS09720 at 542.437 kb on + strand, within HMPREF1078_RS09720 at 542.438 kb on - strand, within HMPREF1078_RS09720 at 542.438 kb on - strand, within HMPREF1078_RS09720 at 542.455 kb on - strand, within HMPREF1078_RS09720 at 542.455 kb on - strand, within HMPREF1078_RS09720 at 542.456 kb on + strand, within HMPREF1078_RS09720 at 542.475 kb on - strand, within HMPREF1078_RS09720 at 542.549 kb on - strand, within HMPREF1078_RS09720 at 542.563 kb on - strand, within HMPREF1078_RS09720 at 542.571 kb on + strand, within HMPREF1078_RS09720 at 542.571 kb on + strand, within HMPREF1078_RS09720 at 542.572 kb on - strand, within HMPREF1078_RS09720 at 542.576 kb on - strand, within HMPREF1078_RS09720 at 542.580 kb on + strand, within HMPREF1078_RS09720 at 542.599 kb on - strand, within HMPREF1078_RS09720 at 542.611 kb on - strand, within HMPREF1078_RS09720 at 542.615 kb on + strand, within HMPREF1078_RS09720 at 542.624 kb on + strand, within HMPREF1078_RS09720 at 542.624 kb on + strand, within HMPREF1078_RS09720 at 542.625 kb on - strand, within HMPREF1078_RS09720 at 542.625 kb on - strand, within HMPREF1078_RS09720 at 542.661 kb on + strand, within HMPREF1078_RS09720 at 542.674 kb on - strand, within HMPREF1078_RS09720 at 542.712 kb on - strand, within HMPREF1078_RS09720 at 542.712 kb on - strand, within HMPREF1078_RS09720 at 542.753 kb on - strand, within HMPREF1078_RS09720 at 542.769 kb on - strand, within HMPREF1078_RS09720 at 542.769 kb on - strand, within HMPREF1078_RS09720 at 542.772 kb on + strand, within HMPREF1078_RS09720 at 542.773 kb on - strand, within HMPREF1078_RS09720 at 542.839 kb on - strand, within HMPREF1078_RS09720 at 542.839 kb on - strand, within HMPREF1078_RS09720 at 542.839 kb on - strand, within HMPREF1078_RS09720 at 542.872 kb on - strand, within HMPREF1078_RS09720 at 542.922 kb on + strand, within HMPREF1078_RS09720 at 543.012 kb on + strand at 543.012 kb on + strand at 543.013 kb on - strand at 543.041 kb on - strand at 543.041 kb on - strand at 543.046 kb on - strand at 543.146 kb on - strand at 543.173 kb on + strand at 543.174 kb on - strand at 543.174 kb on - strand at 543.180 kb on + strand at 543.199 kb on - strand at 543.208 kb on - strand at 543.246 kb on + strand at 543.253 kb on - strand at 543.253 kb on - strand at 543.253 kb on - strand at 543.287 kb on - strand at 543.407 kb on - strand, within HMPREF1078_RS09725 at 543.407 kb on - strand, within HMPREF1078_RS09725 at 543.452 kb on - strand, within HMPREF1078_RS09725 at 543.472 kb on - strand, within HMPREF1078_RS09725 at 543.475 kb on + strand, within HMPREF1078_RS09725 at 543.475 kb on + strand, within HMPREF1078_RS09725 at 543.475 kb on + strand, within HMPREF1078_RS09725 at 543.476 kb on - strand, within HMPREF1078_RS09725 at 543.476 kb on - strand, within HMPREF1078_RS09725 at 543.476 kb on - strand, within HMPREF1078_RS09725 at 543.499 kb on + strand, within HMPREF1078_RS09725 at 543.499 kb on + strand, within HMPREF1078_RS09725 at 543.505 kb on + strand, within HMPREF1078_RS09725 at 543.505 kb on + strand, within HMPREF1078_RS09725 at 543.591 kb on + strand, within HMPREF1078_RS09725 at 543.592 kb on - strand, within HMPREF1078_RS09725 at 543.592 kb on - strand, within HMPREF1078_RS09725 at 543.592 kb on - strand, within HMPREF1078_RS09725 at 543.713 kb on + strand at 543.713 kb on + strand at 543.729 kb on - strand at 543.753 kb on + strand at 543.785 kb on + strand at 543.785 kb on + strand at 543.786 kb on - strand at 543.847 kb on - strand at 543.847 kb on - strand at 543.849 kb on - strand at 543.849 kb on - strand at 543.852 kb on + strand at 543.888 kb on + strand at 543.889 kb on - strand at 543.889 kb on - strand at 543.982 kb on + strand, within HMPREF1078_RS09730 at 543.983 kb on - strand, within HMPREF1078_RS09730 at 544.030 kb on + strand, within HMPREF1078_RS09730 at 544.030 kb on + strand, within HMPREF1078_RS09730 at 544.031 kb on - strand, within HMPREF1078_RS09730 at 544.057 kb on + strand, within HMPREF1078_RS09730 at 544.063 kb on + strand, within HMPREF1078_RS09730 at 544.064 kb on - strand, within HMPREF1078_RS09730 at 544.174 kb on - strand at 544.251 kb on + strand at 544.260 kb on - strand at 544.290 kb on + strand at 544.291 kb on - strand at 544.291 kb on - strand at 544.326 kb on - strand at 544.331 kb on - strand at 544.436 kb on - strand at 544.436 kb on - strand at 544.436 kb on - strand at 544.440 kb on - strand at 544.558 kb on - strand at 544.599 kb on + strand, within HMPREF1078_RS09735 at 544.634 kb on + strand, within HMPREF1078_RS09735
Per-strain Table
Position Strand Gene LocusTag Fraction GAM 1 x (C) remove 542,331 + HMPREF1078_RS09720 0.56 +0.1 542,377 - HMPREF1078_RS09720 0.58 +0.0 542,437 + HMPREF1078_RS09720 0.61 -1.7 542,438 - HMPREF1078_RS09720 0.62 +0.6 542,438 - HMPREF1078_RS09720 0.62 -1.9 542,455 - HMPREF1078_RS09720 0.62 +0.2 542,455 - HMPREF1078_RS09720 0.62 -0.5 542,456 + HMPREF1078_RS09720 0.62 -0.1 542,475 - HMPREF1078_RS09720 0.63 +0.8 542,549 - HMPREF1078_RS09720 0.67 +0.2 542,563 - HMPREF1078_RS09720 0.68 +0.5 542,571 + HMPREF1078_RS09720 0.69 -1.9 542,571 + HMPREF1078_RS09720 0.69 +1.1 542,572 - HMPREF1078_RS09720 0.69 +0.6 542,576 - HMPREF1078_RS09720 0.69 -1.7 542,580 + HMPREF1078_RS09720 0.69 -0.8 542,599 - HMPREF1078_RS09720 0.70 -1.5 542,611 - HMPREF1078_RS09720 0.71 -1.5 542,615 + HMPREF1078_RS09720 0.71 +1.3 542,624 + HMPREF1078_RS09720 0.71 +2.3 542,624 + HMPREF1078_RS09720 0.71 +0.3 542,625 - HMPREF1078_RS09720 0.71 +1.0 542,625 - HMPREF1078_RS09720 0.71 +1.2 542,661 + HMPREF1078_RS09720 0.73 -1.1 542,674 - HMPREF1078_RS09720 0.74 +0.2 542,712 - HMPREF1078_RS09720 0.76 +1.0 542,712 - HMPREF1078_RS09720 0.76 +1.2 542,753 - HMPREF1078_RS09720 0.78 +1.3 542,769 - HMPREF1078_RS09720 0.79 -0.2 542,769 - HMPREF1078_RS09720 0.79 -0.6 542,772 + HMPREF1078_RS09720 0.79 -2.2 542,773 - HMPREF1078_RS09720 0.79 +0.4 542,839 - HMPREF1078_RS09720 0.83 +0.3 542,839 - HMPREF1078_RS09720 0.83 +1.3 542,839 - HMPREF1078_RS09720 0.83 -0.3 542,872 - HMPREF1078_RS09720 0.85 -0.2 542,922 + HMPREF1078_RS09720 0.87 -0.6 543,012 + +0.7 543,012 + +1.3 543,013 - -0.3 543,041 - -0.7 543,041 - -0.2 543,046 - +0.1 543,146 - +1.4 543,173 + +0.3 543,174 - +0.3 543,174 - -0.5 543,180 + +0.0 543,199 - +0.4 543,208 - +1.0 543,246 + +0.0 543,253 - +1.0 543,253 - +1.4 543,253 - +0.7 543,287 - +0.5 543,407 - HMPREF1078_RS09725 0.39 +1.6 543,407 - HMPREF1078_RS09725 0.39 +0.0 543,452 - HMPREF1078_RS09725 0.50 -0.1 543,472 - HMPREF1078_RS09725 0.55 +0.0 543,475 + HMPREF1078_RS09725 0.56 -0.5 543,475 + HMPREF1078_RS09725 0.56 +0.6 543,475 + HMPREF1078_RS09725 0.56 -0.1 543,476 - HMPREF1078_RS09725 0.56 +1.3 543,476 - HMPREF1078_RS09725 0.56 +0.3 543,476 - HMPREF1078_RS09725 0.56 +0.1 543,499 + HMPREF1078_RS09725 0.62 -2.0 543,499 + HMPREF1078_RS09725 0.62 +1.0 543,505 + HMPREF1078_RS09725 0.63 -0.7 543,505 + HMPREF1078_RS09725 0.63 -0.8 543,591 + HMPREF1078_RS09725 0.85 +0.9 543,592 - HMPREF1078_RS09725 0.85 +2.2 543,592 - HMPREF1078_RS09725 0.85 -2.2 543,592 - HMPREF1078_RS09725 0.85 -0.0 543,713 + -1.3 543,713 + -0.3 543,729 - -0.8 543,753 + +0.1 543,785 + -1.4 543,785 + -0.5 543,786 - -0.8 543,847 - -2.1 543,847 - +0.3 543,849 - +0.2 543,849 - -0.7 543,852 + +0.2 543,888 + -0.7 543,889 - -0.0 543,889 - -0.8 543,982 + HMPREF1078_RS09730 0.21 +0.8 543,983 - HMPREF1078_RS09730 0.22 +0.1 544,030 + HMPREF1078_RS09730 0.41 -0.2 544,030 + HMPREF1078_RS09730 0.41 -0.8 544,031 - HMPREF1078_RS09730 0.41 +0.6 544,057 + HMPREF1078_RS09730 0.52 +0.1 544,063 + HMPREF1078_RS09730 0.54 -0.6 544,064 - HMPREF1078_RS09730 0.54 +0.3 544,174 - +1.4 544,251 + +0.2 544,260 - -0.1 544,290 + -1.3 544,291 - +0.5 544,291 - +0.3 544,326 - +1.2 544,331 - -0.1 544,436 - +0.3 544,436 - -0.1 544,436 - -0.4 544,440 - +0.9 544,558 - +1.2 544,599 + HMPREF1078_RS09735 0.13 +0.3 544,634 + HMPREF1078_RS09735 0.17 -1.1
Or see this region's nucleotide sequence