Experiment: GAM 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS08615 and HMPREF1078_RS08620 are separated by 78 nucleotides HMPREF1078_RS08620 and HMPREF1078_RS08625 are separated by 2 nucleotides HMPREF1078_RS08625 and HMPREF1078_RS08630 are separated by 82 nucleotides
HMPREF1078_RS08615: HMPREF1078_RS08615 - glutamine--tRNA ligase/YqeY domain fusion protein, at 305,109 to 306,851
_RS08615
HMPREF1078_RS08620: HMPREF1078_RS08620 - tetratricopeptide repeat protein, at 306,930 to 308,372
_RS08620
HMPREF1078_RS08625: HMPREF1078_RS08625 - DUF368 domain-containing protein, at 308,375 to 309,283
_RS08625
HMPREF1078_RS08630: HMPREF1078_RS08630 - 6-phosphogluconolactonase, at 309,366 to 310,067
_RS08630
Position (kb) 306
307
308
309 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 306.824 kb on + strand at 306.824 kb on + strand at 306.824 kb on + strand at 306.849 kb on + strand at 306.900 kb on + strand at 306.922 kb on + strand at 306.922 kb on + strand at 306.922 kb on + strand at 306.924 kb on + strand at 306.926 kb on + strand at 306.929 kb on + strand at 306.958 kb on + strand at 306.989 kb on + strand at 307.058 kb on + strand at 307.058 kb on + strand at 307.058 kb on + strand at 307.058 kb on + strand at 307.058 kb on + strand at 307.058 kb on + strand at 307.062 kb on + strand at 307.062 kb on + strand at 307.062 kb on + strand at 307.062 kb on + strand at 307.062 kb on + strand at 307.062 kb on + strand at 307.062 kb on + strand at 307.065 kb on + strand at 307.065 kb on + strand at 307.065 kb on + strand at 307.065 kb on + strand at 307.065 kb on + strand at 307.140 kb on + strand, within HMPREF1078_RS08620 at 307.140 kb on + strand, within HMPREF1078_RS08620 at 307.140 kb on + strand, within HMPREF1078_RS08620 at 307.140 kb on + strand, within HMPREF1078_RS08620 at 307.146 kb on + strand, within HMPREF1078_RS08620 at 307.158 kb on + strand, within HMPREF1078_RS08620 at 307.236 kb on + strand, within HMPREF1078_RS08620 at 307.305 kb on + strand, within HMPREF1078_RS08620 at 307.328 kb on + strand, within HMPREF1078_RS08620 at 307.328 kb on + strand, within HMPREF1078_RS08620 at 307.342 kb on + strand, within HMPREF1078_RS08620 at 307.394 kb on + strand, within HMPREF1078_RS08620 at 307.437 kb on + strand, within HMPREF1078_RS08620 at 307.439 kb on + strand, within HMPREF1078_RS08620 at 307.444 kb on + strand, within HMPREF1078_RS08620 at 307.563 kb on + strand, within HMPREF1078_RS08620 at 307.650 kb on + strand, within HMPREF1078_RS08620 at 307.650 kb on + strand, within HMPREF1078_RS08620 at 307.684 kb on + strand, within HMPREF1078_RS08620 at 307.684 kb on + strand, within HMPREF1078_RS08620 at 307.686 kb on + strand, within HMPREF1078_RS08620 at 307.686 kb on + strand, within HMPREF1078_RS08620 at 307.686 kb on + strand, within HMPREF1078_RS08620 at 307.686 kb on + strand, within HMPREF1078_RS08620 at 307.686 kb on + strand, within HMPREF1078_RS08620 at 307.686 kb on + strand, within HMPREF1078_RS08620 at 307.686 kb on + strand, within HMPREF1078_RS08620 at 307.688 kb on + strand, within HMPREF1078_RS08620 at 307.688 kb on + strand, within HMPREF1078_RS08620 at 307.688 kb on + strand, within HMPREF1078_RS08620 at 307.688 kb on + strand, within HMPREF1078_RS08620 at 307.688 kb on + strand, within HMPREF1078_RS08620 at 307.688 kb on + strand, within HMPREF1078_RS08620 at 307.688 kb on + strand, within HMPREF1078_RS08620 at 307.688 kb on + strand, within HMPREF1078_RS08620 at 307.694 kb on + strand, within HMPREF1078_RS08620 at 307.754 kb on + strand, within HMPREF1078_RS08620 at 307.754 kb on + strand, within HMPREF1078_RS08620 at 307.754 kb on + strand, within HMPREF1078_RS08620 at 307.798 kb on + strand, within HMPREF1078_RS08620 at 307.798 kb on + strand, within HMPREF1078_RS08620 at 307.801 kb on + strand, within HMPREF1078_RS08620 at 307.836 kb on + strand, within HMPREF1078_RS08620 at 307.836 kb on + strand, within HMPREF1078_RS08620 at 307.838 kb on + strand, within HMPREF1078_RS08620 at 307.845 kb on + strand, within HMPREF1078_RS08620 at 307.845 kb on + strand, within HMPREF1078_RS08620 at 307.845 kb on + strand, within HMPREF1078_RS08620 at 307.847 kb on + strand, within HMPREF1078_RS08620 at 307.955 kb on + strand, within HMPREF1078_RS08620 at 307.955 kb on + strand, within HMPREF1078_RS08620 at 307.955 kb on + strand, within HMPREF1078_RS08620 at 307.955 kb on + strand, within HMPREF1078_RS08620 at 307.955 kb on + strand, within HMPREF1078_RS08620 at 307.955 kb on + strand, within HMPREF1078_RS08620 at 307.955 kb on + strand, within HMPREF1078_RS08620 at 307.955 kb on + strand, within HMPREF1078_RS08620 at 307.955 kb on + strand, within HMPREF1078_RS08620 at 307.955 kb on + strand, within HMPREF1078_RS08620 at 307.959 kb on + strand, within HMPREF1078_RS08620 at 307.959 kb on + strand, within HMPREF1078_RS08620 at 307.959 kb on + strand, within HMPREF1078_RS08620 at 307.988 kb on + strand, within HMPREF1078_RS08620 at 307.988 kb on + strand, within HMPREF1078_RS08620 at 308.062 kb on + strand, within HMPREF1078_RS08620 at 308.079 kb on + strand, within HMPREF1078_RS08620 at 308.099 kb on + strand, within HMPREF1078_RS08620 at 308.099 kb on + strand, within HMPREF1078_RS08620 at 308.099 kb on + strand, within HMPREF1078_RS08620 at 308.113 kb on + strand, within HMPREF1078_RS08620 at 308.113 kb on + strand, within HMPREF1078_RS08620 at 308.123 kb on + strand, within HMPREF1078_RS08620 at 308.123 kb on + strand, within HMPREF1078_RS08620 at 308.123 kb on + strand, within HMPREF1078_RS08620 at 308.157 kb on + strand, within HMPREF1078_RS08620 at 308.157 kb on + strand, within HMPREF1078_RS08620 at 308.157 kb on + strand, within HMPREF1078_RS08620 at 308.157 kb on + strand, within HMPREF1078_RS08620 at 308.159 kb on + strand, within HMPREF1078_RS08620 at 308.159 kb on + strand, within HMPREF1078_RS08620 at 308.159 kb on + strand, within HMPREF1078_RS08620 at 308.159 kb on + strand, within HMPREF1078_RS08620 at 308.159 kb on + strand, within HMPREF1078_RS08620 at 308.159 kb on + strand, within HMPREF1078_RS08620 at 308.159 kb on + strand, within HMPREF1078_RS08620 at 308.184 kb on + strand, within HMPREF1078_RS08620 at 308.184 kb on + strand, within HMPREF1078_RS08620 at 308.184 kb on + strand, within HMPREF1078_RS08620 at 308.315 kb on + strand at 308.315 kb on + strand at 308.315 kb on + strand at 308.360 kb on + strand at 308.360 kb on + strand at 308.366 kb on + strand at 308.366 kb on + strand at 308.366 kb on + strand at 309.284 kb on + strand at 309.285 kb on - strand at 309.290 kb on - strand at 309.290 kb on - strand at 309.296 kb on - strand at 309.370 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction GAM 1 x (C) remove 306,824 + +0.5 306,824 + +0.5 306,824 + -0.7 306,849 + +0.1 306,900 + -0.3 306,922 + -1.3 306,922 + -0.5 306,922 + +0.8 306,924 + -0.6 306,926 + -0.1 306,929 + -0.8 306,958 + -0.1 306,989 + -0.3 307,058 + -0.9 307,058 + -1.2 307,058 + -0.2 307,058 + -1.6 307,058 + +1.2 307,058 + -0.8 307,062 + -2.9 307,062 + -0.5 307,062 + -0.4 307,062 + +0.1 307,062 + -2.2 307,062 + -2.2 307,062 + -0.6 307,065 + -1.5 307,065 + -1.8 307,065 + +1.2 307,065 + +0.1 307,065 + +0.9 307,140 + HMPREF1078_RS08620 0.15 +0.3 307,140 + HMPREF1078_RS08620 0.15 -0.8 307,140 + HMPREF1078_RS08620 0.15 -0.4 307,140 + HMPREF1078_RS08620 0.15 +1.4 307,146 + HMPREF1078_RS08620 0.15 -1.3 307,158 + HMPREF1078_RS08620 0.16 -0.3 307,236 + HMPREF1078_RS08620 0.21 -2.3 307,305 + HMPREF1078_RS08620 0.26 -1.2 307,328 + HMPREF1078_RS08620 0.28 -2.7 307,328 + HMPREF1078_RS08620 0.28 -0.5 307,342 + HMPREF1078_RS08620 0.29 +0.0 307,394 + HMPREF1078_RS08620 0.32 -1.6 307,437 + HMPREF1078_RS08620 0.35 +1.2 307,439 + HMPREF1078_RS08620 0.35 -2.0 307,444 + HMPREF1078_RS08620 0.36 -0.7 307,563 + HMPREF1078_RS08620 0.44 -1.5 307,650 + HMPREF1078_RS08620 0.50 -0.6 307,650 + HMPREF1078_RS08620 0.50 -1.2 307,684 + HMPREF1078_RS08620 0.52 -0.1 307,684 + HMPREF1078_RS08620 0.52 +0.4 307,686 + HMPREF1078_RS08620 0.52 +0.2 307,686 + HMPREF1078_RS08620 0.52 -0.1 307,686 + HMPREF1078_RS08620 0.52 -0.7 307,686 + HMPREF1078_RS08620 0.52 -0.7 307,686 + HMPREF1078_RS08620 0.52 -0.0 307,686 + HMPREF1078_RS08620 0.52 -0.4 307,686 + HMPREF1078_RS08620 0.52 -0.8 307,688 + HMPREF1078_RS08620 0.53 +1.8 307,688 + HMPREF1078_RS08620 0.53 -2.5 307,688 + HMPREF1078_RS08620 0.53 -0.1 307,688 + HMPREF1078_RS08620 0.53 +0.1 307,688 + HMPREF1078_RS08620 0.53 -1.0 307,688 + HMPREF1078_RS08620 0.53 -0.9 307,688 + HMPREF1078_RS08620 0.53 +0.5 307,688 + HMPREF1078_RS08620 0.53 -0.1 307,694 + HMPREF1078_RS08620 0.53 +0.6 307,754 + HMPREF1078_RS08620 0.57 -0.9 307,754 + HMPREF1078_RS08620 0.57 -0.7 307,754 + HMPREF1078_RS08620 0.57 -0.5 307,798 + HMPREF1078_RS08620 0.60 -1.8 307,798 + HMPREF1078_RS08620 0.60 -0.4 307,801 + HMPREF1078_RS08620 0.60 -0.5 307,836 + HMPREF1078_RS08620 0.63 +0.1 307,836 + HMPREF1078_RS08620 0.63 -1.1 307,838 + HMPREF1078_RS08620 0.63 -4.1 307,845 + HMPREF1078_RS08620 0.63 +0.2 307,845 + HMPREF1078_RS08620 0.63 -1.0 307,845 + HMPREF1078_RS08620 0.63 -2.1 307,847 + HMPREF1078_RS08620 0.64 -0.4 307,955 + HMPREF1078_RS08620 0.71 -0.9 307,955 + HMPREF1078_RS08620 0.71 +0.3 307,955 + HMPREF1078_RS08620 0.71 -2.3 307,955 + HMPREF1078_RS08620 0.71 -0.4 307,955 + HMPREF1078_RS08620 0.71 -1.4 307,955 + HMPREF1078_RS08620 0.71 +1.2 307,955 + HMPREF1078_RS08620 0.71 -0.8 307,955 + HMPREF1078_RS08620 0.71 +0.3 307,955 + HMPREF1078_RS08620 0.71 -0.1 307,955 + HMPREF1078_RS08620 0.71 -1.9 307,959 + HMPREF1078_RS08620 0.71 -0.2 307,959 + HMPREF1078_RS08620 0.71 -1.2 307,959 + HMPREF1078_RS08620 0.71 -0.5 307,988 + HMPREF1078_RS08620 0.73 -1.2 307,988 + HMPREF1078_RS08620 0.73 -0.9 308,062 + HMPREF1078_RS08620 0.78 -1.0 308,079 + HMPREF1078_RS08620 0.80 -1.5 308,099 + HMPREF1078_RS08620 0.81 -1.1 308,099 + HMPREF1078_RS08620 0.81 -1.5 308,099 + HMPREF1078_RS08620 0.81 +1.4 308,113 + HMPREF1078_RS08620 0.82 -2.2 308,113 + HMPREF1078_RS08620 0.82 -0.7 308,123 + HMPREF1078_RS08620 0.83 -0.6 308,123 + HMPREF1078_RS08620 0.83 -1.9 308,123 + HMPREF1078_RS08620 0.83 -1.4 308,157 + HMPREF1078_RS08620 0.85 -0.8 308,157 + HMPREF1078_RS08620 0.85 +0.2 308,157 + HMPREF1078_RS08620 0.85 -0.9 308,157 + HMPREF1078_RS08620 0.85 +2.7 308,159 + HMPREF1078_RS08620 0.85 -0.5 308,159 + HMPREF1078_RS08620 0.85 -0.4 308,159 + HMPREF1078_RS08620 0.85 +0.4 308,159 + HMPREF1078_RS08620 0.85 -0.2 308,159 + HMPREF1078_RS08620 0.85 +0.8 308,159 + HMPREF1078_RS08620 0.85 -0.9 308,159 + HMPREF1078_RS08620 0.85 -1.1 308,184 + HMPREF1078_RS08620 0.87 -0.1 308,184 + HMPREF1078_RS08620 0.87 -1.0 308,184 + HMPREF1078_RS08620 0.87 -0.8 308,315 + -0.2 308,315 + +0.1 308,315 + +0.0 308,360 + +1.9 308,360 + -0.8 308,366 + -1.3 308,366 + +1.0 308,366 + -0.6 309,284 + -0.5 309,285 - +0.5 309,290 - -0.3 309,290 - +1.3 309,296 - -1.5 309,370 - -0.3
Or see this region's nucleotide sequence