Experiment: GAM 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS01160 and HMPREF1078_RS01165 are separated by 62 nucleotides HMPREF1078_RS01165 and HMPREF1078_RS01170 are separated by 38 nucleotides HMPREF1078_RS01170 and HMPREF1078_RS01175 overlap by 4 nucleotides
HMPREF1078_RS01160: HMPREF1078_RS01160 - DUF6493 family protein, at 289,853 to 291,409
_RS01160
HMPREF1078_RS01165: HMPREF1078_RS01165 - agmatine deiminase family protein, at 291,472 to 292,509
_RS01165
HMPREF1078_RS01170: HMPREF1078_RS01170 - carbon-nitrogen hydrolase, at 292,548 to 293,423
_RS01170
HMPREF1078_RS01175: HMPREF1078_RS01175 - aminodeoxychorismate synthase component I, at 293,420 to 294,421
_RS01175
Position (kb) 291
292
293 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 290.642 kb on - strand, within HMPREF1078_RS01160 at 290.675 kb on - strand, within HMPREF1078_RS01160 at 290.742 kb on + strand, within HMPREF1078_RS01160 at 290.744 kb on + strand, within HMPREF1078_RS01160 at 290.745 kb on - strand, within HMPREF1078_RS01160 at 290.745 kb on - strand, within HMPREF1078_RS01160 at 290.745 kb on - strand, within HMPREF1078_RS01160 at 290.747 kb on - strand, within HMPREF1078_RS01160 at 290.747 kb on - strand, within HMPREF1078_RS01160 at 290.747 kb on - strand, within HMPREF1078_RS01160 at 290.893 kb on - strand, within HMPREF1078_RS01160 at 290.999 kb on + strand, within HMPREF1078_RS01160 at 291.000 kb on - strand, within HMPREF1078_RS01160 at 291.087 kb on + strand, within HMPREF1078_RS01160 at 291.313 kb on + strand at 291.314 kb on - strand at 291.332 kb on + strand at 291.333 kb on - strand at 291.333 kb on - strand at 291.333 kb on - strand at 291.333 kb on - strand at 291.333 kb on - strand at 291.424 kb on - strand at 291.429 kb on + strand at 291.431 kb on + strand at 291.432 kb on - strand at 291.455 kb on + strand at 291.464 kb on - strand at 291.492 kb on - strand at 291.564 kb on - strand at 291.566 kb on + strand at 291.567 kb on - strand at 291.590 kb on + strand, within HMPREF1078_RS01165 at 291.720 kb on + strand, within HMPREF1078_RS01165 at 291.721 kb on - strand, within HMPREF1078_RS01165 at 291.721 kb on - strand, within HMPREF1078_RS01165 at 291.721 kb on - strand, within HMPREF1078_RS01165 at 291.747 kb on + strand, within HMPREF1078_RS01165 at 291.748 kb on - strand, within HMPREF1078_RS01165 at 291.753 kb on - strand, within HMPREF1078_RS01165 at 291.779 kb on - strand, within HMPREF1078_RS01165 at 291.891 kb on + strand, within HMPREF1078_RS01165 at 291.891 kb on + strand, within HMPREF1078_RS01165 at 291.892 kb on - strand, within HMPREF1078_RS01165 at 291.892 kb on - strand, within HMPREF1078_RS01165 at 291.963 kb on - strand, within HMPREF1078_RS01165 at 292.019 kb on - strand, within HMPREF1078_RS01165 at 292.070 kb on - strand, within HMPREF1078_RS01165 at 292.131 kb on + strand, within HMPREF1078_RS01165 at 292.132 kb on - strand, within HMPREF1078_RS01165 at 292.132 kb on - strand, within HMPREF1078_RS01165 at 292.141 kb on + strand, within HMPREF1078_RS01165 at 292.206 kb on - strand, within HMPREF1078_RS01165 at 292.348 kb on + strand, within HMPREF1078_RS01165 at 292.350 kb on + strand, within HMPREF1078_RS01165 at 292.351 kb on - strand, within HMPREF1078_RS01165 at 292.413 kb on + strand at 292.415 kb on + strand at 292.416 kb on - strand at 292.529 kb on - strand at 292.555 kb on + strand at 292.577 kb on + strand at 292.599 kb on - strand at 292.619 kb on + strand at 292.832 kb on + strand, within HMPREF1078_RS01170 at 292.832 kb on + strand, within HMPREF1078_RS01170 at 292.892 kb on + strand, within HMPREF1078_RS01170 at 292.914 kb on + strand, within HMPREF1078_RS01170 at 292.915 kb on - strand, within HMPREF1078_RS01170 at 292.987 kb on + strand, within HMPREF1078_RS01170 at 292.987 kb on + strand, within HMPREF1078_RS01170 at 293.119 kb on + strand, within HMPREF1078_RS01170 at 293.120 kb on - strand, within HMPREF1078_RS01170 at 293.182 kb on + strand, within HMPREF1078_RS01170 at 293.294 kb on + strand, within HMPREF1078_RS01170 at 293.309 kb on - strand, within HMPREF1078_RS01170 at 293.360 kb on + strand at 293.420 kb on - strand at 293.429 kb on + strand at 293.440 kb on - strand at 293.440 kb on - strand at 293.456 kb on - strand at 293.505 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction GAM 1 x (C) remove 290,642 - HMPREF1078_RS01160 0.51 +0.5 290,675 - HMPREF1078_RS01160 0.53 +0.5 290,742 + HMPREF1078_RS01160 0.57 -0.0 290,744 + HMPREF1078_RS01160 0.57 +0.1 290,745 - HMPREF1078_RS01160 0.57 -1.6 290,745 - HMPREF1078_RS01160 0.57 -0.3 290,745 - HMPREF1078_RS01160 0.57 -0.0 290,747 - HMPREF1078_RS01160 0.57 -0.1 290,747 - HMPREF1078_RS01160 0.57 -1.2 290,747 - HMPREF1078_RS01160 0.57 -0.2 290,893 - HMPREF1078_RS01160 0.67 +0.1 290,999 + HMPREF1078_RS01160 0.74 -0.6 291,000 - HMPREF1078_RS01160 0.74 +0.5 291,087 + HMPREF1078_RS01160 0.79 +0.4 291,313 + -0.1 291,314 - +0.4 291,332 + -0.6 291,333 - -1.1 291,333 - -0.9 291,333 - +0.2 291,333 - +1.1 291,333 - -0.7 291,424 - -1.2 291,429 + -0.1 291,431 + -0.2 291,432 - -2.1 291,455 + -1.3 291,464 - -1.8 291,492 - -3.6 291,564 - -3.3 291,566 + -3.6 291,567 - -2.2 291,590 + HMPREF1078_RS01165 0.11 -2.0 291,720 + HMPREF1078_RS01165 0.24 -4.0 291,721 - HMPREF1078_RS01165 0.24 -2.3 291,721 - HMPREF1078_RS01165 0.24 -1.5 291,721 - HMPREF1078_RS01165 0.24 -0.6 291,747 + HMPREF1078_RS01165 0.26 -2.6 291,748 - HMPREF1078_RS01165 0.27 -2.6 291,753 - HMPREF1078_RS01165 0.27 -0.9 291,779 - HMPREF1078_RS01165 0.30 -2.3 291,891 + HMPREF1078_RS01165 0.40 -1.0 291,891 + HMPREF1078_RS01165 0.40 -1.5 291,892 - HMPREF1078_RS01165 0.40 -0.9 291,892 - HMPREF1078_RS01165 0.40 -2.2 291,963 - HMPREF1078_RS01165 0.47 -0.7 292,019 - HMPREF1078_RS01165 0.53 -0.9 292,070 - HMPREF1078_RS01165 0.58 -0.8 292,131 + HMPREF1078_RS01165 0.63 -1.0 292,132 - HMPREF1078_RS01165 0.64 -2.2 292,132 - HMPREF1078_RS01165 0.64 -0.2 292,141 + HMPREF1078_RS01165 0.64 -3.7 292,206 - HMPREF1078_RS01165 0.71 -3.8 292,348 + HMPREF1078_RS01165 0.84 -2.6 292,350 + HMPREF1078_RS01165 0.85 -2.5 292,351 - HMPREF1078_RS01165 0.85 -3.2 292,413 + -2.4 292,415 + -2.8 292,416 - -1.3 292,529 - -1.6 292,555 + -1.6 292,577 + -0.2 292,599 - +0.2 292,619 + -1.1 292,832 + HMPREF1078_RS01170 0.32 -1.3 292,832 + HMPREF1078_RS01170 0.32 +0.6 292,892 + HMPREF1078_RS01170 0.39 -0.7 292,914 + HMPREF1078_RS01170 0.42 +1.5 292,915 - HMPREF1078_RS01170 0.42 -2.1 292,987 + HMPREF1078_RS01170 0.50 -0.4 292,987 + HMPREF1078_RS01170 0.50 -1.2 293,119 + HMPREF1078_RS01170 0.65 +1.1 293,120 - HMPREF1078_RS01170 0.65 +0.3 293,182 + HMPREF1078_RS01170 0.72 -1.9 293,294 + HMPREF1078_RS01170 0.85 -0.3 293,309 - HMPREF1078_RS01170 0.87 -1.8 293,360 + -1.0 293,420 - +0.8 293,429 + -0.1 293,440 - -0.6 293,440 - -0.9 293,456 - -1.3 293,505 - +0.6
Or see this region's nucleotide sequence