Experiment: marine_broth_2216 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS03565 and HMPREF1078_RS20060 are separated by 195 nucleotides HMPREF1078_RS20060 and HMPREF1078_RS03570 are separated by 495 nucleotides
HMPREF1078_RS03565: HMPREF1078_RS03565 - glycoside hydrolase family 127 protein, at 837,011 to 838,888
_RS03565
HMPREF1078_RS20060: HMPREF1078_RS20060 - hypothetical protein, at 839,084 to 839,218
_RS20060
HMPREF1078_RS03570: HMPREF1078_RS03570 - RNA polymerase sigma-70 factor, at 839,714 to 840,304
_RS03570
Position (kb) 839
840 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 838.198 kb on + strand, within HMPREF1078_RS03565 at 838.250 kb on - strand, within HMPREF1078_RS03565 at 838.250 kb on - strand, within HMPREF1078_RS03565 at 838.251 kb on + strand, within HMPREF1078_RS03565 at 838.251 kb on + strand, within HMPREF1078_RS03565 at 838.252 kb on - strand, within HMPREF1078_RS03565 at 838.252 kb on - strand, within HMPREF1078_RS03565 at 838.252 kb on - strand, within HMPREF1078_RS03565 at 838.299 kb on + strand, within HMPREF1078_RS03565 at 838.299 kb on + strand, within HMPREF1078_RS03565 at 838.299 kb on + strand, within HMPREF1078_RS03565 at 838.300 kb on - strand, within HMPREF1078_RS03565 at 838.300 kb on - strand, within HMPREF1078_RS03565 at 838.300 kb on - strand, within HMPREF1078_RS03565 at 838.300 kb on - strand, within HMPREF1078_RS03565 at 838.341 kb on + strand, within HMPREF1078_RS03565 at 838.450 kb on - strand, within HMPREF1078_RS03565 at 838.475 kb on - strand, within HMPREF1078_RS03565 at 838.476 kb on + strand, within HMPREF1078_RS03565 at 838.476 kb on + strand, within HMPREF1078_RS03565 at 838.477 kb on - strand, within HMPREF1078_RS03565 at 838.505 kb on + strand, within HMPREF1078_RS03565 at 838.505 kb on + strand, within HMPREF1078_RS03565 at 838.525 kb on - strand, within HMPREF1078_RS03565 at 838.767 kb on - strand at 838.771 kb on - strand at 838.793 kb on + strand at 838.812 kb on - strand at 838.888 kb on + strand at 838.909 kb on + strand at 838.943 kb on + strand at 838.944 kb on - strand at 838.964 kb on + strand at 838.980 kb on + strand at 838.996 kb on + strand at 838.999 kb on + strand at 839.000 kb on - strand at 839.049 kb on - strand at 839.054 kb on + strand at 839.055 kb on - strand at 839.056 kb on + strand at 839.070 kb on - strand at 839.072 kb on + strand at 839.073 kb on - strand at 839.079 kb on + strand at 839.079 kb on + strand at 839.094 kb on - strand at 839.094 kb on - strand at 839.094 kb on - strand at 839.122 kb on + strand, within HMPREF1078_RS20060 at 839.123 kb on - strand, within HMPREF1078_RS20060 at 839.149 kb on - strand, within HMPREF1078_RS20060 at 839.162 kb on + strand, within HMPREF1078_RS20060 at 839.162 kb on + strand, within HMPREF1078_RS20060 at 839.163 kb on - strand, within HMPREF1078_RS20060 at 839.163 kb on - strand, within HMPREF1078_RS20060 at 839.166 kb on + strand, within HMPREF1078_RS20060 at 839.166 kb on + strand, within HMPREF1078_RS20060 at 839.166 kb on + strand, within HMPREF1078_RS20060 at 839.167 kb on - strand, within HMPREF1078_RS20060 at 839.167 kb on - strand, within HMPREF1078_RS20060 at 839.167 kb on - strand, within HMPREF1078_RS20060 at 839.176 kb on + strand, within HMPREF1078_RS20060 at 839.177 kb on - strand, within HMPREF1078_RS20060 at 839.180 kb on - strand, within HMPREF1078_RS20060 at 839.228 kb on + strand at 839.228 kb on + strand at 839.228 kb on + strand at 839.228 kb on + strand at 839.228 kb on + strand at 839.228 kb on + strand at 839.229 kb on - strand at 839.229 kb on - strand at 839.229 kb on - strand at 839.229 kb on - strand at 839.229 kb on - strand at 839.229 kb on - strand at 839.259 kb on + strand at 839.260 kb on - strand at 839.260 kb on - strand at 839.260 kb on - strand at 839.272 kb on + strand at 839.282 kb on - strand at 839.283 kb on + strand at 839.283 kb on + strand at 839.283 kb on + strand at 839.283 kb on + strand at 839.284 kb on - strand at 839.284 kb on - strand at 839.284 kb on - strand at 839.296 kb on - strand at 839.296 kb on - strand at 839.299 kb on + strand at 839.299 kb on + strand at 839.300 kb on - strand at 839.300 kb on - strand at 839.300 kb on - strand at 839.316 kb on - strand at 839.331 kb on - strand at 839.331 kb on - strand at 839.350 kb on - strand at 839.360 kb on + strand at 839.360 kb on + strand at 839.399 kb on - strand at 839.399 kb on - strand at 839.424 kb on - strand at 839.430 kb on - strand at 839.430 kb on - strand at 839.430 kb on - strand at 839.430 kb on - strand at 839.673 kb on + strand at 839.683 kb on + strand at 839.690 kb on + strand at 839.796 kb on + strand, within HMPREF1078_RS03570 at 839.959 kb on - strand, within HMPREF1078_RS03570 at 839.965 kb on + strand, within HMPREF1078_RS03570 at 839.965 kb on + strand, within HMPREF1078_RS03570 at 839.965 kb on + strand, within HMPREF1078_RS03570 at 839.972 kb on - strand, within HMPREF1078_RS03570 at 839.978 kb on + strand, within HMPREF1078_RS03570 at 840.024 kb on + strand, within HMPREF1078_RS03570 at 840.053 kb on - strand, within HMPREF1078_RS03570 at 840.053 kb on - strand, within HMPREF1078_RS03570 at 840.057 kb on - strand, within HMPREF1078_RS03570 at 840.057 kb on - strand, within HMPREF1078_RS03570 at 840.100 kb on + strand, within HMPREF1078_RS03570 at 840.101 kb on - strand, within HMPREF1078_RS03570 at 840.158 kb on + strand, within HMPREF1078_RS03570 at 840.159 kb on - strand, within HMPREF1078_RS03570 at 840.159 kb on - strand, within HMPREF1078_RS03570 at 840.160 kb on + strand, within HMPREF1078_RS03570 at 840.161 kb on - strand, within HMPREF1078_RS03570 at 840.186 kb on + strand, within HMPREF1078_RS03570 at 840.212 kb on - strand, within HMPREF1078_RS03570 at 840.213 kb on + strand, within HMPREF1078_RS03570 at 840.213 kb on + strand, within HMPREF1078_RS03570 at 840.214 kb on - strand, within HMPREF1078_RS03570 at 840.217 kb on + strand, within HMPREF1078_RS03570 at 840.218 kb on - strand, within HMPREF1078_RS03570 at 840.218 kb on - strand, within HMPREF1078_RS03570
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C) remove 838,198 + HMPREF1078_RS03565 0.63 -0.6 838,250 - HMPREF1078_RS03565 0.66 +0.3 838,250 - HMPREF1078_RS03565 0.66 +0.2 838,251 + HMPREF1078_RS03565 0.66 +1.1 838,251 + HMPREF1078_RS03565 0.66 +2.4 838,252 - HMPREF1078_RS03565 0.66 +0.2 838,252 - HMPREF1078_RS03565 0.66 -1.0 838,252 - HMPREF1078_RS03565 0.66 +1.2 838,299 + HMPREF1078_RS03565 0.69 -0.6 838,299 + HMPREF1078_RS03565 0.69 -1.6 838,299 + HMPREF1078_RS03565 0.69 +1.9 838,300 - HMPREF1078_RS03565 0.69 -0.8 838,300 - HMPREF1078_RS03565 0.69 -2.8 838,300 - HMPREF1078_RS03565 0.69 +1.6 838,300 - HMPREF1078_RS03565 0.69 -1.1 838,341 + HMPREF1078_RS03565 0.71 -1.3 838,450 - HMPREF1078_RS03565 0.77 +1.2 838,475 - HMPREF1078_RS03565 0.78 -0.1 838,476 + HMPREF1078_RS03565 0.78 +1.6 838,476 + HMPREF1078_RS03565 0.78 +0.7 838,477 - HMPREF1078_RS03565 0.78 +1.2 838,505 + HMPREF1078_RS03565 0.80 -0.7 838,505 + HMPREF1078_RS03565 0.80 -1.0 838,525 - HMPREF1078_RS03565 0.81 -2.1 838,767 - -0.4 838,771 - +0.1 838,793 + -1.7 838,812 - +1.0 838,888 + -0.2 838,909 + -0.2 838,943 + +1.6 838,944 - -0.4 838,964 + +0.5 838,980 + +0.1 838,996 + +0.2 838,999 + -0.1 839,000 - -0.4 839,049 - +0.2 839,054 + +0.0 839,055 - -0.5 839,056 + -0.4 839,070 - +0.6 839,072 + -0.3 839,073 - +0.5 839,079 + -0.3 839,079 + -0.8 839,094 - -0.9 839,094 - -0.2 839,094 - +0.2 839,122 + HMPREF1078_RS20060 0.28 -0.6 839,123 - HMPREF1078_RS20060 0.29 +0.2 839,149 - HMPREF1078_RS20060 0.48 -1.3 839,162 + HMPREF1078_RS20060 0.58 -1.1 839,162 + HMPREF1078_RS20060 0.58 -1.0 839,163 - HMPREF1078_RS20060 0.59 +0.0 839,163 - HMPREF1078_RS20060 0.59 -1.0 839,166 + HMPREF1078_RS20060 0.61 -1.0 839,166 + HMPREF1078_RS20060 0.61 -0.7 839,166 + HMPREF1078_RS20060 0.61 +0.0 839,167 - HMPREF1078_RS20060 0.61 +0.7 839,167 - HMPREF1078_RS20060 0.61 -0.4 839,167 - HMPREF1078_RS20060 0.61 +1.4 839,176 + HMPREF1078_RS20060 0.68 -1.1 839,177 - HMPREF1078_RS20060 0.69 -1.2 839,180 - HMPREF1078_RS20060 0.71 +0.0 839,228 + -1.7 839,228 + -0.4 839,228 + +0.3 839,228 + -0.2 839,228 + -0.4 839,228 + -1.0 839,229 - +0.4 839,229 - +0.3 839,229 - -0.6 839,229 - -0.2 839,229 - -1.1 839,229 - -0.5 839,259 + +1.4 839,260 - -0.9 839,260 - -2.6 839,260 - +0.3 839,272 + -1.7 839,282 - -1.8 839,283 + -0.8 839,283 + +0.2 839,283 + +1.8 839,283 + +0.4 839,284 - -0.8 839,284 - -1.0 839,284 - +0.0 839,296 - +0.9 839,296 - -1.0 839,299 + +0.6 839,299 + -1.2 839,300 - +0.4 839,300 - -0.3 839,300 - -1.2 839,316 - -1.3 839,331 - -1.2 839,331 - -1.0 839,350 - -0.2 839,360 + +0.5 839,360 + -1.7 839,399 - -0.0 839,399 - -0.2 839,424 - +0.9 839,430 - -1.0 839,430 - -0.8 839,430 - -2.3 839,430 - -0.9 839,673 + -0.4 839,683 + +0.0 839,690 + +1.4 839,796 + HMPREF1078_RS03570 0.14 -1.1 839,959 - HMPREF1078_RS03570 0.41 -0.2 839,965 + HMPREF1078_RS03570 0.42 +0.0 839,965 + HMPREF1078_RS03570 0.42 +0.4 839,965 + HMPREF1078_RS03570 0.42 -1.2 839,972 - HMPREF1078_RS03570 0.44 +0.5 839,978 + HMPREF1078_RS03570 0.45 -1.2 840,024 + HMPREF1078_RS03570 0.52 -0.4 840,053 - HMPREF1078_RS03570 0.57 +1.4 840,053 - HMPREF1078_RS03570 0.57 -0.9 840,057 - HMPREF1078_RS03570 0.58 +1.5 840,057 - HMPREF1078_RS03570 0.58 -0.6 840,100 + HMPREF1078_RS03570 0.65 +0.0 840,101 - HMPREF1078_RS03570 0.65 +0.0 840,158 + HMPREF1078_RS03570 0.75 -1.9 840,159 - HMPREF1078_RS03570 0.75 -0.3 840,159 - HMPREF1078_RS03570 0.75 +1.3 840,160 + HMPREF1078_RS03570 0.75 -1.4 840,161 - HMPREF1078_RS03570 0.76 +0.5 840,186 + HMPREF1078_RS03570 0.80 +2.0 840,212 - HMPREF1078_RS03570 0.84 +1.2 840,213 + HMPREF1078_RS03570 0.84 -0.3 840,213 + HMPREF1078_RS03570 0.84 +1.3 840,214 - HMPREF1078_RS03570 0.85 -0.6 840,217 + HMPREF1078_RS03570 0.85 -0.1 840,218 - HMPREF1078_RS03570 0.85 -0.6 840,218 - HMPREF1078_RS03570 0.85 -0.8
Or see this region's nucleotide sequence