Experiment: marine_broth_2216 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS03500 and HMPREF1078_RS03510 are separated by 89 nucleotides HMPREF1078_RS03510 and HMPREF1078_RS20055 are separated by 4 nucleotides HMPREF1078_RS20055 and HMPREF1078_RS03515 are separated by 54 nucleotides HMPREF1078_RS03515 and HMPREF1078_RS03520 are separated by 17 nucleotides
HMPREF1078_RS03500: HMPREF1078_RS03500 - carboxymuconolactone decarboxylase family protein, at 825,750 to 827,425
_RS03500
HMPREF1078_RS03510: HMPREF1078_RS03510 - cupin domain-containing protein, at 827,515 to 828,006
_RS03510
HMPREF1078_RS20055: HMPREF1078_RS20055 - hypothetical protein, at 828,011 to 828,142
_RS20055
HMPREF1078_RS03515: HMPREF1078_RS03515 - response regulator transcription factor, at 828,197 to 829,027
_RS03515
HMPREF1078_RS03520: HMPREF1078_RS03520 - AraC family transcriptional regulator, at 829,045 to 829,941
_RS03520
Position (kb) 828
829 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 827.163 kb on - strand, within HMPREF1078_RS03500 at 827.355 kb on - strand at 827.504 kb on - strand at 827.504 kb on - strand at 827.531 kb on - strand at 827.531 kb on - strand at 827.649 kb on + strand, within HMPREF1078_RS03510 at 827.729 kb on + strand, within HMPREF1078_RS03510 at 827.831 kb on + strand, within HMPREF1078_RS03510 at 827.855 kb on + strand, within HMPREF1078_RS03510 at 827.862 kb on + strand, within HMPREF1078_RS03510 at 827.919 kb on + strand, within HMPREF1078_RS03510 at 827.919 kb on + strand, within HMPREF1078_RS03510 at 827.919 kb on + strand, within HMPREF1078_RS03510 at 827.919 kb on + strand, within HMPREF1078_RS03510 at 827.920 kb on - strand, within HMPREF1078_RS03510 at 827.921 kb on + strand, within HMPREF1078_RS03510 at 827.921 kb on + strand, within HMPREF1078_RS03510 at 827.921 kb on + strand, within HMPREF1078_RS03510 at 827.921 kb on + strand, within HMPREF1078_RS03510 at 827.922 kb on - strand, within HMPREF1078_RS03510 at 827.925 kb on + strand, within HMPREF1078_RS03510 at 827.925 kb on + strand, within HMPREF1078_RS03510 at 827.996 kb on - strand at 828.097 kb on + strand, within HMPREF1078_RS20055 at 828.116 kb on - strand, within HMPREF1078_RS20055 at 828.163 kb on - strand at 828.199 kb on - strand at 828.262 kb on - strand at 828.323 kb on + strand, within HMPREF1078_RS03515 at 828.323 kb on + strand, within HMPREF1078_RS03515 at 828.323 kb on + strand, within HMPREF1078_RS03515 at 828.324 kb on - strand, within HMPREF1078_RS03515 at 828.454 kb on + strand, within HMPREF1078_RS03515 at 828.487 kb on + strand, within HMPREF1078_RS03515 at 828.489 kb on + strand, within HMPREF1078_RS03515 at 828.490 kb on - strand, within HMPREF1078_RS03515 at 828.564 kb on + strand, within HMPREF1078_RS03515 at 828.577 kb on + strand, within HMPREF1078_RS03515 at 828.577 kb on + strand, within HMPREF1078_RS03515 at 828.579 kb on + strand, within HMPREF1078_RS03515 at 828.580 kb on - strand, within HMPREF1078_RS03515 at 828.598 kb on + strand, within HMPREF1078_RS03515 at 828.598 kb on + strand, within HMPREF1078_RS03515 at 828.598 kb on + strand, within HMPREF1078_RS03515 at 828.598 kb on + strand, within HMPREF1078_RS03515 at 828.599 kb on - strand, within HMPREF1078_RS03515 at 828.599 kb on - strand, within HMPREF1078_RS03515 at 828.625 kb on - strand, within HMPREF1078_RS03515 at 828.701 kb on + strand, within HMPREF1078_RS03515 at 828.701 kb on + strand, within HMPREF1078_RS03515 at 828.701 kb on + strand, within HMPREF1078_RS03515 at 828.701 kb on + strand, within HMPREF1078_RS03515 at 828.702 kb on - strand, within HMPREF1078_RS03515 at 828.702 kb on - strand, within HMPREF1078_RS03515 at 828.742 kb on - strand, within HMPREF1078_RS03515 at 828.806 kb on + strand, within HMPREF1078_RS03515 at 828.939 kb on + strand, within HMPREF1078_RS03515 at 828.939 kb on + strand, within HMPREF1078_RS03515 at 828.940 kb on - strand, within HMPREF1078_RS03515 at 828.940 kb on - strand, within HMPREF1078_RS03515 at 828.940 kb on - strand, within HMPREF1078_RS03515 at 828.956 kb on + strand at 828.957 kb on - strand at 828.957 kb on - strand at 828.998 kb on - strand at 828.999 kb on + strand at 829.032 kb on + strand at 829.033 kb on - strand at 829.035 kb on + strand at 829.038 kb on - strand at 829.046 kb on + strand at 829.074 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C) remove 827,163 - HMPREF1078_RS03500 0.84 +0.2 827,355 - -1.6 827,504 - -2.4 827,504 - -2.0 827,531 - +0.9 827,531 - +1.7 827,649 + HMPREF1078_RS03510 0.27 -1.2 827,729 + HMPREF1078_RS03510 0.43 -0.6 827,831 + HMPREF1078_RS03510 0.64 -1.7 827,855 + HMPREF1078_RS03510 0.69 -1.1 827,862 + HMPREF1078_RS03510 0.71 +1.0 827,919 + HMPREF1078_RS03510 0.82 +1.1 827,919 + HMPREF1078_RS03510 0.82 +1.6 827,919 + HMPREF1078_RS03510 0.82 -1.9 827,919 + HMPREF1078_RS03510 0.82 +0.5 827,920 - HMPREF1078_RS03510 0.82 -0.5 827,921 + HMPREF1078_RS03510 0.83 +1.7 827,921 + HMPREF1078_RS03510 0.83 +0.0 827,921 + HMPREF1078_RS03510 0.83 -0.8 827,921 + HMPREF1078_RS03510 0.83 +0.7 827,922 - HMPREF1078_RS03510 0.83 +0.3 827,925 + HMPREF1078_RS03510 0.83 -0.2 827,925 + HMPREF1078_RS03510 0.83 +1.7 827,996 - -0.2 828,097 + HMPREF1078_RS20055 0.65 -0.4 828,116 - HMPREF1078_RS20055 0.80 -2.5 828,163 - +1.0 828,199 - +1.3 828,262 - -0.6 828,323 + HMPREF1078_RS03515 0.15 +0.8 828,323 + HMPREF1078_RS03515 0.15 -1.1 828,323 + HMPREF1078_RS03515 0.15 -1.4 828,324 - HMPREF1078_RS03515 0.15 -0.1 828,454 + HMPREF1078_RS03515 0.31 -0.6 828,487 + HMPREF1078_RS03515 0.35 +1.4 828,489 + HMPREF1078_RS03515 0.35 +0.6 828,490 - HMPREF1078_RS03515 0.35 +0.9 828,564 + HMPREF1078_RS03515 0.44 +0.0 828,577 + HMPREF1078_RS03515 0.46 -1.6 828,577 + HMPREF1078_RS03515 0.46 -1.0 828,579 + HMPREF1078_RS03515 0.46 +0.3 828,580 - HMPREF1078_RS03515 0.46 -2.2 828,598 + HMPREF1078_RS03515 0.48 -1.1 828,598 + HMPREF1078_RS03515 0.48 -0.4 828,598 + HMPREF1078_RS03515 0.48 +1.1 828,598 + HMPREF1078_RS03515 0.48 -1.0 828,599 - HMPREF1078_RS03515 0.48 -0.6 828,599 - HMPREF1078_RS03515 0.48 -1.0 828,625 - HMPREF1078_RS03515 0.52 -0.4 828,701 + HMPREF1078_RS03515 0.61 -3.1 828,701 + HMPREF1078_RS03515 0.61 +0.0 828,701 + HMPREF1078_RS03515 0.61 -0.2 828,701 + HMPREF1078_RS03515 0.61 -1.0 828,702 - HMPREF1078_RS03515 0.61 +0.3 828,702 - HMPREF1078_RS03515 0.61 -0.5 828,742 - HMPREF1078_RS03515 0.66 -1.6 828,806 + HMPREF1078_RS03515 0.73 -1.7 828,939 + HMPREF1078_RS03515 0.89 -0.3 828,939 + HMPREF1078_RS03515 0.89 +0.8 828,940 - HMPREF1078_RS03515 0.89 -1.5 828,940 - HMPREF1078_RS03515 0.89 +0.1 828,940 - HMPREF1078_RS03515 0.89 -0.6 828,956 + -1.1 828,957 - +0.3 828,957 - -1.1 828,998 - -0.1 828,999 + -0.7 829,032 + -0.5 829,033 - -0.7 829,035 + -1.6 829,038 - +1.4 829,046 + -1.9 829,074 + -0.2
Or see this region's nucleotide sequence