Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS20035

Experiment: marine_broth_2216 1 x (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHMPREF1078_RS17995 and HMPREF1078_RS20035 are separated by 22 nucleotidesHMPREF1078_RS20035 and HMPREF1078_RS18005 are separated by 115 nucleotides HMPREF1078_RS17995: HMPREF1078_RS17995 - DUF4838 domain-containing protein, at 37,634 to 39,070 _RS17995 HMPREF1078_RS20035: HMPREF1078_RS20035 - tyrosine-type recombinase/integrase, at 39,093 to 39,317 _RS20035 HMPREF1078_RS18005: HMPREF1078_RS18005 - reverse transcriptase/maturase family protein, at 39,433 to 41,250 _RS18005 Position (kb) 39 40Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 38.151 kb on + strand, within HMPREF1078_RS17995at 38.266 kb on + strand, within HMPREF1078_RS17995at 38.289 kb on + strand, within HMPREF1078_RS17995at 38.310 kb on - strand, within HMPREF1078_RS17995at 38.330 kb on + strand, within HMPREF1078_RS17995at 38.330 kb on + strand, within HMPREF1078_RS17995at 38.331 kb on - strand, within HMPREF1078_RS17995at 38.331 kb on - strand, within HMPREF1078_RS17995at 38.335 kb on + strand, within HMPREF1078_RS17995at 38.336 kb on - strand, within HMPREF1078_RS17995at 38.379 kb on + strand, within HMPREF1078_RS17995at 38.379 kb on + strand, within HMPREF1078_RS17995at 38.380 kb on - strand, within HMPREF1078_RS17995at 38.380 kb on - strand, within HMPREF1078_RS17995at 38.380 kb on - strand, within HMPREF1078_RS17995at 38.436 kb on + strand, within HMPREF1078_RS17995at 38.436 kb on + strand, within HMPREF1078_RS17995at 38.437 kb on - strand, within HMPREF1078_RS17995at 38.490 kb on + strand, within HMPREF1078_RS17995at 38.496 kb on + strand, within HMPREF1078_RS17995at 38.496 kb on + strand, within HMPREF1078_RS17995at 38.497 kb on - strand, within HMPREF1078_RS17995at 38.503 kb on - strand, within HMPREF1078_RS17995at 38.520 kb on + strand, within HMPREF1078_RS17995at 38.523 kb on + strand, within HMPREF1078_RS17995at 38.523 kb on + strand, within HMPREF1078_RS17995at 38.540 kb on - strand, within HMPREF1078_RS17995at 38.540 kb on - strand, within HMPREF1078_RS17995at 38.540 kb on - strand, within HMPREF1078_RS17995at 38.595 kb on + strand, within HMPREF1078_RS17995at 38.636 kb on + strand, within HMPREF1078_RS17995at 38.759 kb on + strand, within HMPREF1078_RS17995at 38.760 kb on - strand, within HMPREF1078_RS17995at 38.760 kb on - strand, within HMPREF1078_RS17995at 38.761 kb on + strand, within HMPREF1078_RS17995at 38.761 kb on + strand, within HMPREF1078_RS17995at 38.762 kb on - strand, within HMPREF1078_RS17995at 38.852 kb on + strand, within HMPREF1078_RS17995at 38.853 kb on - strand, within HMPREF1078_RS17995at 38.916 kb on + strand, within HMPREF1078_RS17995at 38.923 kb on - strand, within HMPREF1078_RS17995at 38.969 kb on - strandat 39.089 kb on - strandat 39.089 kb on - strandat 39.089 kb on - strandat 39.089 kb on - strandat 39.091 kb on - strandat 39.091 kb on - strandat 39.219 kb on + strand, within HMPREF1078_RS20035at 39.219 kb on + strand, within HMPREF1078_RS20035at 39.219 kb on + strand, within HMPREF1078_RS20035at 39.219 kb on + strand, within HMPREF1078_RS20035at 39.220 kb on - strand, within HMPREF1078_RS20035at 39.318 kb on + strandat 39.388 kb on + strandat 39.388 kb on + strandat 39.388 kb on + strandat 39.388 kb on + strandat 39.388 kb on + strandat 39.388 kb on + strandat 39.388 kb on + strandat 39.388 kb on + strandat 39.388 kb on + strandat 39.389 kb on - strandat 39.389 kb on - strandat 39.389 kb on - strandat 39.389 kb on - strandat 39.389 kb on - strandat 39.402 kb on + strandat 39.403 kb on - strandat 39.405 kb on - strandat 39.426 kb on - strandat 39.431 kb on + strandat 39.434 kb on + strandat 39.454 kb on + strandat 39.490 kb on - strandat 39.501 kb on + strandat 39.526 kb on - strandat 39.549 kb on + strandat 39.549 kb on + strandat 39.550 kb on - strandat 39.550 kb on - strandat 39.550 kb on - strandat 39.553 kb on + strandat 39.558 kb on + strandat 39.589 kb on + strandat 39.590 kb on - strandat 39.641 kb on + strand, within HMPREF1078_RS18005at 39.642 kb on - strand, within HMPREF1078_RS18005at 39.642 kb on - strand, within HMPREF1078_RS18005at 39.642 kb on - strand, within HMPREF1078_RS18005at 39.642 kb on - strand, within HMPREF1078_RS18005at 39.656 kb on - strand, within HMPREF1078_RS18005at 39.656 kb on - strand, within HMPREF1078_RS18005at 39.657 kb on + strand, within HMPREF1078_RS18005at 39.657 kb on + strand, within HMPREF1078_RS18005at 39.657 kb on + strand, within HMPREF1078_RS18005at 39.657 kb on + strand, within HMPREF1078_RS18005at 39.658 kb on - strand, within HMPREF1078_RS18005at 39.680 kb on + strand, within HMPREF1078_RS18005at 39.680 kb on + strand, within HMPREF1078_RS18005at 39.681 kb on - strand, within HMPREF1078_RS18005at 39.719 kb on + strand, within HMPREF1078_RS18005at 39.724 kb on + strand, within HMPREF1078_RS18005at 39.725 kb on - strand, within HMPREF1078_RS18005at 39.746 kb on - strand, within HMPREF1078_RS18005at 39.748 kb on - strand, within HMPREF1078_RS18005at 39.750 kb on + strand, within HMPREF1078_RS18005at 39.751 kb on - strand, within HMPREF1078_RS18005at 39.756 kb on + strand, within HMPREF1078_RS18005at 39.756 kb on + strand, within HMPREF1078_RS18005at 39.757 kb on - strand, within HMPREF1078_RS18005at 39.757 kb on - strand, within HMPREF1078_RS18005at 39.757 kb on - strand, within HMPREF1078_RS18005at 39.757 kb on - strand, within HMPREF1078_RS18005at 39.758 kb on + strand, within HMPREF1078_RS18005at 39.758 kb on + strand, within HMPREF1078_RS18005at 39.758 kb on + strand, within HMPREF1078_RS18005at 39.758 kb on + strand, within HMPREF1078_RS18005at 39.759 kb on - strand, within HMPREF1078_RS18005at 39.851 kb on + strand, within HMPREF1078_RS18005at 39.852 kb on - strand, within HMPREF1078_RS18005at 39.885 kb on - strand, within HMPREF1078_RS18005at 39.885 kb on - strand, within HMPREF1078_RS18005at 39.891 kb on + strand, within HMPREF1078_RS18005at 39.908 kb on + strand, within HMPREF1078_RS18005at 39.908 kb on + strand, within HMPREF1078_RS18005at 39.909 kb on - strand, within HMPREF1078_RS18005at 39.909 kb on - strand, within HMPREF1078_RS18005at 39.909 kb on - strand, within HMPREF1078_RS18005at 39.911 kb on + strand, within HMPREF1078_RS18005at 39.917 kb on + strand, within HMPREF1078_RS18005at 39.941 kb on + strand, within HMPREF1078_RS18005at 39.941 kb on + strand, within HMPREF1078_RS18005at 39.942 kb on - strand, within HMPREF1078_RS18005at 39.942 kb on - strand, within HMPREF1078_RS18005at 39.954 kb on + strand, within HMPREF1078_RS18005at 39.973 kb on + strand, within HMPREF1078_RS18005at 39.973 kb on + strand, within HMPREF1078_RS18005at 39.974 kb on - strand, within HMPREF1078_RS18005at 39.978 kb on + strand, within HMPREF1078_RS18005at 39.978 kb on + strand, within HMPREF1078_RS18005at 39.979 kb on - strand, within HMPREF1078_RS18005at 39.980 kb on + strand, within HMPREF1078_RS18005at 39.980 kb on + strand, within HMPREF1078_RS18005at 39.981 kb on - strand, within HMPREF1078_RS18005at 39.981 kb on - strand, within HMPREF1078_RS18005at 39.981 kb on - strand, within HMPREF1078_RS18005at 39.999 kb on + strand, within HMPREF1078_RS18005at 39.999 kb on + strand, within HMPREF1078_RS18005at 39.999 kb on + strand, within HMPREF1078_RS18005at 40.000 kb on - strand, within HMPREF1078_RS18005at 40.000 kb on - strand, within HMPREF1078_RS18005at 40.015 kb on - strand, within HMPREF1078_RS18005at 40.043 kb on + strand, within HMPREF1078_RS18005at 40.043 kb on + strand, within HMPREF1078_RS18005at 40.044 kb on - strand, within HMPREF1078_RS18005at 40.044 kb on - strand, within HMPREF1078_RS18005at 40.059 kb on + strand, within HMPREF1078_RS18005at 40.079 kb on - strand, within HMPREF1078_RS18005at 40.079 kb on - strand, within HMPREF1078_RS18005at 40.117 kb on + strand, within HMPREF1078_RS18005at 40.117 kb on + strand, within HMPREF1078_RS18005at 40.118 kb on - strand, within HMPREF1078_RS18005at 40.137 kb on + strand, within HMPREF1078_RS18005at 40.138 kb on - strand, within HMPREF1078_RS18005at 40.207 kb on + strand, within HMPREF1078_RS18005at 40.260 kb on + strand, within HMPREF1078_RS18005at 40.261 kb on - strand, within HMPREF1078_RS18005at 40.311 kb on + strand, within HMPREF1078_RS18005

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C)
remove
38,151 + HMPREF1078_RS17995 0.36 -0.1
38,266 + HMPREF1078_RS17995 0.44 -0.8
38,289 + HMPREF1078_RS17995 0.46 +0.1
38,310 - HMPREF1078_RS17995 0.47 +0.5
38,330 + HMPREF1078_RS17995 0.48 +0.6
38,330 + HMPREF1078_RS17995 0.48 -0.4
38,331 - HMPREF1078_RS17995 0.49 +0.5
38,331 - HMPREF1078_RS17995 0.49 +0.5
38,335 + HMPREF1078_RS17995 0.49 -0.1
38,336 - HMPREF1078_RS17995 0.49 -0.5
38,379 + HMPREF1078_RS17995 0.52 -2.5
38,379 + HMPREF1078_RS17995 0.52 +0.3
38,380 - HMPREF1078_RS17995 0.52 +1.3
38,380 - HMPREF1078_RS17995 0.52 -0.5
38,380 - HMPREF1078_RS17995 0.52 -1.5
38,436 + HMPREF1078_RS17995 0.56 +3.1
38,436 + HMPREF1078_RS17995 0.56 -0.1
38,437 - HMPREF1078_RS17995 0.56 -0.3
38,490 + HMPREF1078_RS17995 0.60 -0.1
38,496 + HMPREF1078_RS17995 0.60 +0.5
38,496 + HMPREF1078_RS17995 0.60 +0.5
38,497 - HMPREF1078_RS17995 0.60 +0.4
38,503 - HMPREF1078_RS17995 0.60 -1.8
38,520 + HMPREF1078_RS17995 0.62 -0.1
38,523 + HMPREF1078_RS17995 0.62 +0.5
38,523 + HMPREF1078_RS17995 0.62 -1.4
38,540 - HMPREF1078_RS17995 0.63 +0.2
38,540 - HMPREF1078_RS17995 0.63 -0.5
38,540 - HMPREF1078_RS17995 0.63 +0.0
38,595 + HMPREF1078_RS17995 0.67 +0.2
38,636 + HMPREF1078_RS17995 0.70 -0.0
38,759 + HMPREF1078_RS17995 0.78 -0.8
38,760 - HMPREF1078_RS17995 0.78 -0.3
38,760 - HMPREF1078_RS17995 0.78 -0.4
38,761 + HMPREF1078_RS17995 0.78 -0.1
38,761 + HMPREF1078_RS17995 0.78 -1.1
38,762 - HMPREF1078_RS17995 0.78 +0.8
38,852 + HMPREF1078_RS17995 0.85 -0.2
38,853 - HMPREF1078_RS17995 0.85 -0.2
38,916 + HMPREF1078_RS17995 0.89 +0.5
38,923 - HMPREF1078_RS17995 0.90 +0.2
38,969 - -1.5
39,089 - +0.5
39,089 - -0.0
39,089 - +0.4
39,089 - -1.4
39,091 - -0.1
39,091 - +0.6
39,219 + HMPREF1078_RS20035 0.56 +0.1
39,219 + HMPREF1078_RS20035 0.56 -2.2
39,219 + HMPREF1078_RS20035 0.56 -0.4
39,219 + HMPREF1078_RS20035 0.56 -0.7
39,220 - HMPREF1078_RS20035 0.56 -0.5
39,318 + -0.3
39,388 + +0.7
39,388 + -2.8
39,388 + -0.5
39,388 + -0.7
39,388 + +0.5
39,388 + +0.1
39,388 + +0.5
39,388 + +0.7
39,388 + -1.3
39,389 - +0.2
39,389 - +0.4
39,389 - -0.8
39,389 - -0.9
39,389 - -1.1
39,402 + -0.4
39,403 - +0.1
39,405 - +0.9
39,426 - -0.6
39,431 + +0.4
39,434 + +0.5
39,454 + +0.9
39,490 - +0.1
39,501 + +0.6
39,526 - -0.2
39,549 + +0.3
39,549 + -1.7
39,550 - -0.2
39,550 - +0.1
39,550 - +0.0
39,553 + +0.3
39,558 + -0.5
39,589 + -0.5
39,590 - +0.4
39,641 + HMPREF1078_RS18005 0.11 -0.3
39,642 - HMPREF1078_RS18005 0.11 -0.0
39,642 - HMPREF1078_RS18005 0.11 -0.9
39,642 - HMPREF1078_RS18005 0.11 -1.3
39,642 - HMPREF1078_RS18005 0.11 -1.3
39,656 - HMPREF1078_RS18005 0.12 -1.4
39,656 - HMPREF1078_RS18005 0.12 -0.2
39,657 + HMPREF1078_RS18005 0.12 -1.7
39,657 + HMPREF1078_RS18005 0.12 +1.6
39,657 + HMPREF1078_RS18005 0.12 +1.7
39,657 + HMPREF1078_RS18005 0.12 -0.1
39,658 - HMPREF1078_RS18005 0.12 -0.2
39,680 + HMPREF1078_RS18005 0.14 +0.2
39,680 + HMPREF1078_RS18005 0.14 +0.1
39,681 - HMPREF1078_RS18005 0.14 +0.1
39,719 + HMPREF1078_RS18005 0.16 -0.5
39,724 + HMPREF1078_RS18005 0.16 -0.1
39,725 - HMPREF1078_RS18005 0.16 +1.9
39,746 - HMPREF1078_RS18005 0.17 -1.2
39,748 - HMPREF1078_RS18005 0.17 -2.0
39,750 + HMPREF1078_RS18005 0.17 +0.8
39,751 - HMPREF1078_RS18005 0.17 +1.0
39,756 + HMPREF1078_RS18005 0.18 +0.4
39,756 + HMPREF1078_RS18005 0.18 -0.3
39,757 - HMPREF1078_RS18005 0.18 +0.7
39,757 - HMPREF1078_RS18005 0.18 +0.4
39,757 - HMPREF1078_RS18005 0.18 +0.7
39,757 - HMPREF1078_RS18005 0.18 -0.1
39,758 + HMPREF1078_RS18005 0.18 -0.6
39,758 + HMPREF1078_RS18005 0.18 +0.2
39,758 + HMPREF1078_RS18005 0.18 +1.1
39,758 + HMPREF1078_RS18005 0.18 +0.4
39,759 - HMPREF1078_RS18005 0.18 -0.2
39,851 + HMPREF1078_RS18005 0.23 +1.4
39,852 - HMPREF1078_RS18005 0.23 +0.4
39,885 - HMPREF1078_RS18005 0.25 -0.3
39,885 - HMPREF1078_RS18005 0.25 -1.1
39,891 + HMPREF1078_RS18005 0.25 +0.5
39,908 + HMPREF1078_RS18005 0.26 -0.6
39,908 + HMPREF1078_RS18005 0.26 +0.9
39,909 - HMPREF1078_RS18005 0.26 -1.1
39,909 - HMPREF1078_RS18005 0.26 +0.1
39,909 - HMPREF1078_RS18005 0.26 +0.4
39,911 + HMPREF1078_RS18005 0.26 +0.4
39,917 + HMPREF1078_RS18005 0.27 -2.5
39,941 + HMPREF1078_RS18005 0.28 +0.1
39,941 + HMPREF1078_RS18005 0.28 -1.6
39,942 - HMPREF1078_RS18005 0.28 -0.6
39,942 - HMPREF1078_RS18005 0.28 -2.3
39,954 + HMPREF1078_RS18005 0.29 -0.4
39,973 + HMPREF1078_RS18005 0.30 -0.5
39,973 + HMPREF1078_RS18005 0.30 -0.2
39,974 - HMPREF1078_RS18005 0.30 +0.2
39,978 + HMPREF1078_RS18005 0.30 +0.1
39,978 + HMPREF1078_RS18005 0.30 -0.7
39,979 - HMPREF1078_RS18005 0.30 -0.4
39,980 + HMPREF1078_RS18005 0.30 -0.1
39,980 + HMPREF1078_RS18005 0.30 -0.3
39,981 - HMPREF1078_RS18005 0.30 -0.3
39,981 - HMPREF1078_RS18005 0.30 -0.1
39,981 - HMPREF1078_RS18005 0.30 -1.3
39,999 + HMPREF1078_RS18005 0.31 +0.4
39,999 + HMPREF1078_RS18005 0.31 +0.1
39,999 + HMPREF1078_RS18005 0.31 +0.4
40,000 - HMPREF1078_RS18005 0.31 -0.5
40,000 - HMPREF1078_RS18005 0.31 -2.1
40,015 - HMPREF1078_RS18005 0.32 -2.2
40,043 + HMPREF1078_RS18005 0.34 +0.1
40,043 + HMPREF1078_RS18005 0.34 +0.6
40,044 - HMPREF1078_RS18005 0.34 +0.8
40,044 - HMPREF1078_RS18005 0.34 +0.0
40,059 + HMPREF1078_RS18005 0.34 -0.9
40,079 - HMPREF1078_RS18005 0.36 -0.8
40,079 - HMPREF1078_RS18005 0.36 -0.1
40,117 + HMPREF1078_RS18005 0.38 +0.7
40,117 + HMPREF1078_RS18005 0.38 +0.6
40,118 - HMPREF1078_RS18005 0.38 -1.7
40,137 + HMPREF1078_RS18005 0.39 -0.8
40,138 - HMPREF1078_RS18005 0.39 +1.1
40,207 + HMPREF1078_RS18005 0.43 +0.1
40,260 + HMPREF1078_RS18005 0.45 -2.9
40,261 - HMPREF1078_RS18005 0.46 +0.2
40,311 + HMPREF1078_RS18005 0.48 -1.5

Or see this region's nucleotide sequence