Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS19910

Experiment: marine_broth_2216 1 x (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS11025 and HMPREF1078_RS19910 overlap by 4 nucleotidesHMPREF1078_RS19910 and HMPREF1078_RS11030 are separated by 196 nucleotides HMPREF1078_RS11025: HMPREF1078_RS11025 - glycosyltransferase family protein, at 121,331 to 122,485 _RS11025 HMPREF1078_RS19910: HMPREF1078_RS19910 - UDP-2,3-diacylglucosamine diphosphatase, at 122,482 to 122,631 _RS19910 HMPREF1078_RS11030: HMPREF1078_RS11030 - elongation factor G, at 122,828 to 124,984 _RS11030 Position (kb) 122 123Strain fitness (log2 ratio) -3 -2 -1 0 1at 121.576 kb on + strand, within HMPREF1078_RS11025at 121.592 kb on - strand, within HMPREF1078_RS11025at 121.626 kb on + strand, within HMPREF1078_RS11025at 121.668 kb on + strand, within HMPREF1078_RS11025at 121.687 kb on + strand, within HMPREF1078_RS11025at 121.688 kb on - strand, within HMPREF1078_RS11025at 121.688 kb on - strand, within HMPREF1078_RS11025at 121.689 kb on + strand, within HMPREF1078_RS11025at 121.690 kb on - strand, within HMPREF1078_RS11025at 121.705 kb on + strand, within HMPREF1078_RS11025at 121.706 kb on - strand, within HMPREF1078_RS11025at 121.780 kb on + strand, within HMPREF1078_RS11025at 121.802 kb on + strand, within HMPREF1078_RS11025at 121.802 kb on + strand, within HMPREF1078_RS11025at 121.807 kb on + strand, within HMPREF1078_RS11025at 121.807 kb on + strand, within HMPREF1078_RS11025at 121.807 kb on + strand, within HMPREF1078_RS11025at 121.820 kb on + strand, within HMPREF1078_RS11025at 121.820 kb on + strand, within HMPREF1078_RS11025at 121.820 kb on + strand, within HMPREF1078_RS11025at 121.821 kb on - strand, within HMPREF1078_RS11025at 121.821 kb on - strand, within HMPREF1078_RS11025at 121.823 kb on - strand, within HMPREF1078_RS11025at 121.847 kb on + strand, within HMPREF1078_RS11025at 121.848 kb on - strand, within HMPREF1078_RS11025at 121.863 kb on + strand, within HMPREF1078_RS11025at 121.955 kb on - strand, within HMPREF1078_RS11025at 121.963 kb on - strand, within HMPREF1078_RS11025at 122.073 kb on - strand, within HMPREF1078_RS11025at 122.073 kb on - strand, within HMPREF1078_RS11025at 122.125 kb on - strand, within HMPREF1078_RS11025at 122.128 kb on + strand, within HMPREF1078_RS11025at 122.128 kb on + strand, within HMPREF1078_RS11025at 122.128 kb on + strand, within HMPREF1078_RS11025at 122.128 kb on + strand, within HMPREF1078_RS11025at 122.129 kb on - strand, within HMPREF1078_RS11025at 122.129 kb on - strand, within HMPREF1078_RS11025at 122.184 kb on - strand, within HMPREF1078_RS11025at 122.197 kb on + strand, within HMPREF1078_RS11025at 122.198 kb on - strand, within HMPREF1078_RS11025at 122.198 kb on - strand, within HMPREF1078_RS11025at 122.215 kb on + strand, within HMPREF1078_RS11025at 122.215 kb on + strand, within HMPREF1078_RS11025at 122.215 kb on + strand, within HMPREF1078_RS11025at 122.216 kb on - strand, within HMPREF1078_RS11025at 122.218 kb on - strand, within HMPREF1078_RS11025at 122.239 kb on + strand, within HMPREF1078_RS11025at 122.239 kb on + strand, within HMPREF1078_RS11025at 122.241 kb on + strand, within HMPREF1078_RS11025at 122.242 kb on - strand, within HMPREF1078_RS11025at 122.242 kb on - strand, within HMPREF1078_RS11025at 122.242 kb on - strand, within HMPREF1078_RS11025at 122.246 kb on + strand, within HMPREF1078_RS11025at 122.338 kb on + strand, within HMPREF1078_RS11025at 122.466 kb on - strandat 122.478 kb on - strandat 122.499 kb on - strand, within HMPREF1078_RS19910at 122.504 kb on - strand, within HMPREF1078_RS19910at 122.547 kb on + strand, within HMPREF1078_RS19910at 122.559 kb on + strand, within HMPREF1078_RS19910at 122.692 kb on + strandat 122.739 kb on + strandat 122.742 kb on + strandat 122.761 kb on + strandat 122.806 kb on + strandat 122.813 kb on + strandat 122.898 kb on + strandat 122.898 kb on + strandat 122.918 kb on - strandat 123.020 kb on - strandat 123.031 kb on + strandat 123.101 kb on + strand, within HMPREF1078_RS11030at 123.102 kb on - strand, within HMPREF1078_RS11030at 123.102 kb on - strand, within HMPREF1078_RS11030at 123.108 kb on + strand, within HMPREF1078_RS11030at 123.108 kb on + strand, within HMPREF1078_RS11030at 123.108 kb on + strand, within HMPREF1078_RS11030at 123.194 kb on - strand, within HMPREF1078_RS11030at 123.249 kb on + strand, within HMPREF1078_RS11030at 123.250 kb on - strand, within HMPREF1078_RS11030at 123.277 kb on + strand, within HMPREF1078_RS11030at 123.290 kb on - strand, within HMPREF1078_RS11030at 123.290 kb on - strand, within HMPREF1078_RS11030at 123.381 kb on - strand, within HMPREF1078_RS11030at 123.399 kb on - strand, within HMPREF1078_RS11030at 123.437 kb on - strand, within HMPREF1078_RS11030at 123.451 kb on + strand, within HMPREF1078_RS11030at 123.451 kb on + strand, within HMPREF1078_RS11030at 123.463 kb on - strand, within HMPREF1078_RS11030at 123.463 kb on - strand, within HMPREF1078_RS11030at 123.587 kb on + strand, within HMPREF1078_RS11030at 123.601 kb on + strand, within HMPREF1078_RS11030

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Per-strain Table

Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C)
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121,576 + HMPREF1078_RS11025 0.21 +0.2
121,592 - HMPREF1078_RS11025 0.23 -0.6
121,626 + HMPREF1078_RS11025 0.26 -0.5
121,668 + HMPREF1078_RS11025 0.29 +0.1
121,687 + HMPREF1078_RS11025 0.31 -1.7
121,688 - HMPREF1078_RS11025 0.31 -0.2
121,688 - HMPREF1078_RS11025 0.31 -1.4
121,689 + HMPREF1078_RS11025 0.31 +0.1
121,690 - HMPREF1078_RS11025 0.31 +0.1
121,705 + HMPREF1078_RS11025 0.32 -1.0
121,706 - HMPREF1078_RS11025 0.32 +0.6
121,780 + HMPREF1078_RS11025 0.39 +0.2
121,802 + HMPREF1078_RS11025 0.41 +0.7
121,802 + HMPREF1078_RS11025 0.41 -0.1
121,807 + HMPREF1078_RS11025 0.41 -0.2
121,807 + HMPREF1078_RS11025 0.41 +0.4
121,807 + HMPREF1078_RS11025 0.41 -0.2
121,820 + HMPREF1078_RS11025 0.42 +0.3
121,820 + HMPREF1078_RS11025 0.42 -0.5
121,820 + HMPREF1078_RS11025 0.42 +0.7
121,821 - HMPREF1078_RS11025 0.42 +0.0
121,821 - HMPREF1078_RS11025 0.42 -0.3
121,823 - HMPREF1078_RS11025 0.43 -0.0
121,847 + HMPREF1078_RS11025 0.45 -0.1
121,848 - HMPREF1078_RS11025 0.45 +0.4
121,863 + HMPREF1078_RS11025 0.46 +0.4
121,955 - HMPREF1078_RS11025 0.54 -0.0
121,963 - HMPREF1078_RS11025 0.55 -0.7
122,073 - HMPREF1078_RS11025 0.64 -0.7
122,073 - HMPREF1078_RS11025 0.64 +0.8
122,125 - HMPREF1078_RS11025 0.69 -0.4
122,128 + HMPREF1078_RS11025 0.69 +0.2
122,128 + HMPREF1078_RS11025 0.69 +1.5
122,128 + HMPREF1078_RS11025 0.69 +0.0
122,128 + HMPREF1078_RS11025 0.69 -0.0
122,129 - HMPREF1078_RS11025 0.69 +0.5
122,129 - HMPREF1078_RS11025 0.69 -2.7
122,184 - HMPREF1078_RS11025 0.74 -0.1
122,197 + HMPREF1078_RS11025 0.75 +0.7
122,198 - HMPREF1078_RS11025 0.75 +0.8
122,198 - HMPREF1078_RS11025 0.75 -3.2
122,215 + HMPREF1078_RS11025 0.77 +0.2
122,215 + HMPREF1078_RS11025 0.77 +1.5
122,215 + HMPREF1078_RS11025 0.77 +0.9
122,216 - HMPREF1078_RS11025 0.77 -0.3
122,218 - HMPREF1078_RS11025 0.77 +0.6
122,239 + HMPREF1078_RS11025 0.79 +1.0
122,239 + HMPREF1078_RS11025 0.79 -0.8
122,241 + HMPREF1078_RS11025 0.79 -1.7
122,242 - HMPREF1078_RS11025 0.79 -0.3
122,242 - HMPREF1078_RS11025 0.79 +0.5
122,242 - HMPREF1078_RS11025 0.79 +0.8
122,246 + HMPREF1078_RS11025 0.79 -1.0
122,338 + HMPREF1078_RS11025 0.87 -0.4
122,466 - +1.5
122,478 - +0.3
122,499 - HMPREF1078_RS19910 0.11 -0.8
122,504 - HMPREF1078_RS19910 0.15 -0.1
122,547 + HMPREF1078_RS19910 0.43 -0.6
122,559 + HMPREF1078_RS19910 0.51 -0.5
122,692 + -0.2
122,739 + +0.4
122,742 + -0.3
122,761 + -0.2
122,806 + -2.3
122,813 + +0.9
122,898 + +0.6
122,898 + -0.2
122,918 - +0.1
123,020 - -1.0
123,031 + +0.1
123,101 + HMPREF1078_RS11030 0.13 +1.3
123,102 - HMPREF1078_RS11030 0.13 -0.2
123,102 - HMPREF1078_RS11030 0.13 +0.2
123,108 + HMPREF1078_RS11030 0.13 +0.6
123,108 + HMPREF1078_RS11030 0.13 -0.8
123,108 + HMPREF1078_RS11030 0.13 -0.0
123,194 - HMPREF1078_RS11030 0.17 -1.0
123,249 + HMPREF1078_RS11030 0.20 +0.8
123,250 - HMPREF1078_RS11030 0.20 +0.1
123,277 + HMPREF1078_RS11030 0.21 -0.4
123,290 - HMPREF1078_RS11030 0.21 +0.8
123,290 - HMPREF1078_RS11030 0.21 +0.5
123,381 - HMPREF1078_RS11030 0.26 +0.2
123,399 - HMPREF1078_RS11030 0.26 +0.1
123,437 - HMPREF1078_RS11030 0.28 +0.4
123,451 + HMPREF1078_RS11030 0.29 -1.8
123,451 + HMPREF1078_RS11030 0.29 -1.0
123,463 - HMPREF1078_RS11030 0.29 -1.2
123,463 - HMPREF1078_RS11030 0.29 -1.4
123,587 + HMPREF1078_RS11030 0.35 +0.9
123,601 + HMPREF1078_RS11030 0.36 -1.4

Or see this region's nucleotide sequence