Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS19900

Experiment: marine_broth_2216 1 x (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS10935 and HMPREF1078_RS19900 overlap by 15 nucleotidesHMPREF1078_RS19900 and HMPREF1078_RS19905 are separated by 186 nucleotidesHMPREF1078_RS19905 and HMPREF1078_RS10945 are separated by 60 nucleotides HMPREF1078_RS10935: HMPREF1078_RS10935 - discoidin domain-containing protein, at 98,163 to 99,200 _RS10935 HMPREF1078_RS19900: HMPREF1078_RS19900 - AraC family ligand binding domain-containing protein, at 99,186 to 99,323 _RS19900 HMPREF1078_RS19905: HMPREF1078_RS19905 - AraC family transcriptional regulator, at 99,510 to 99,824 _RS19905 HMPREF1078_RS10945: HMPREF1078_RS10945 - glycoside hydrolase family 97 catalytic domain-containing protein, at 99,885 to 101,078 _RS10945 Position (kb) 99 100Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 98.196 kb on - strandat 98.198 kb on + strandat 98.231 kb on - strandat 98.271 kb on - strand, within HMPREF1078_RS10935at 98.299 kb on + strand, within HMPREF1078_RS10935at 98.333 kb on + strand, within HMPREF1078_RS10935at 98.333 kb on + strand, within HMPREF1078_RS10935at 98.333 kb on + strand, within HMPREF1078_RS10935at 98.335 kb on + strand, within HMPREF1078_RS10935at 98.492 kb on + strand, within HMPREF1078_RS10935at 98.492 kb on + strand, within HMPREF1078_RS10935at 98.493 kb on - strand, within HMPREF1078_RS10935at 98.494 kb on + strand, within HMPREF1078_RS10935at 98.494 kb on + strand, within HMPREF1078_RS10935at 98.494 kb on + strand, within HMPREF1078_RS10935at 98.494 kb on + strand, within HMPREF1078_RS10935at 98.495 kb on - strand, within HMPREF1078_RS10935at 98.518 kb on + strand, within HMPREF1078_RS10935at 98.549 kb on + strand, within HMPREF1078_RS10935at 98.552 kb on - strand, within HMPREF1078_RS10935at 98.552 kb on - strand, within HMPREF1078_RS10935at 98.580 kb on - strand, within HMPREF1078_RS10935at 98.627 kb on - strand, within HMPREF1078_RS10935at 98.780 kb on + strand, within HMPREF1078_RS10935at 98.800 kb on - strand, within HMPREF1078_RS10935at 98.801 kb on + strand, within HMPREF1078_RS10935at 98.836 kb on - strand, within HMPREF1078_RS10935at 98.836 kb on - strand, within HMPREF1078_RS10935at 98.938 kb on + strand, within HMPREF1078_RS10935at 98.938 kb on + strand, within HMPREF1078_RS10935at 98.938 kb on + strand, within HMPREF1078_RS10935at 98.938 kb on + strand, within HMPREF1078_RS10935at 98.938 kb on + strand, within HMPREF1078_RS10935at 98.939 kb on - strand, within HMPREF1078_RS10935at 98.939 kb on - strand, within HMPREF1078_RS10935at 99.008 kb on + strand, within HMPREF1078_RS10935at 99.008 kb on + strand, within HMPREF1078_RS10935at 99.008 kb on + strand, within HMPREF1078_RS10935at 99.009 kb on - strand, within HMPREF1078_RS10935at 99.009 kb on - strand, within HMPREF1078_RS10935at 99.071 kb on + strand, within HMPREF1078_RS10935at 99.071 kb on + strand, within HMPREF1078_RS10935at 99.112 kb on + strandat 99.137 kb on - strandat 99.182 kb on + strandat 99.191 kb on - strandat 99.208 kb on - strand, within HMPREF1078_RS19900at 99.332 kb on - strandat 99.367 kb on + strandat 99.367 kb on + strandat 99.368 kb on - strandat 99.369 kb on + strandat 99.370 kb on - strandat 99.370 kb on - strandat 99.370 kb on - strandat 99.374 kb on + strandat 99.427 kb on + strandat 99.427 kb on + strandat 99.427 kb on + strandat 99.427 kb on + strandat 99.428 kb on - strandat 99.429 kb on + strandat 99.430 kb on - strandat 99.431 kb on + strandat 99.431 kb on + strandat 99.431 kb on + strandat 99.431 kb on + strandat 99.431 kb on + strandat 99.431 kb on + strandat 99.431 kb on + strandat 99.432 kb on - strandat 99.610 kb on + strand, within HMPREF1078_RS19905at 99.610 kb on + strand, within HMPREF1078_RS19905at 99.629 kb on + strand, within HMPREF1078_RS19905at 99.651 kb on - strand, within HMPREF1078_RS19905at 99.681 kb on + strand, within HMPREF1078_RS19905at 99.682 kb on - strand, within HMPREF1078_RS19905at 99.682 kb on - strand, within HMPREF1078_RS19905at 99.693 kb on - strand, within HMPREF1078_RS19905at 99.823 kb on - strandat 99.827 kb on - strandat 99.863 kb on + strandat 99.929 kb on + strandat 100.018 kb on + strand, within HMPREF1078_RS10945at 100.018 kb on + strand, within HMPREF1078_RS10945at 100.019 kb on - strand, within HMPREF1078_RS10945at 100.021 kb on + strand, within HMPREF1078_RS10945at 100.107 kb on + strand, within HMPREF1078_RS10945at 100.111 kb on + strand, within HMPREF1078_RS10945at 100.112 kb on - strand, within HMPREF1078_RS10945at 100.112 kb on - strand, within HMPREF1078_RS10945at 100.147 kb on + strand, within HMPREF1078_RS10945at 100.147 kb on + strand, within HMPREF1078_RS10945at 100.148 kb on - strand, within HMPREF1078_RS10945at 100.148 kb on - strand, within HMPREF1078_RS10945at 100.205 kb on + strand, within HMPREF1078_RS10945at 100.300 kb on + strand, within HMPREF1078_RS10945at 100.301 kb on - strand, within HMPREF1078_RS10945at 100.319 kb on + strand, within HMPREF1078_RS10945at 100.319 kb on + strand, within HMPREF1078_RS10945at 100.320 kb on - strand, within HMPREF1078_RS10945at 100.321 kb on + strand, within HMPREF1078_RS10945

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Per-strain Table

Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C)
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98,196 - -0.3
98,198 + +0.8
98,231 - +0.5
98,271 - HMPREF1078_RS10935 0.10 +1.5
98,299 + HMPREF1078_RS10935 0.13 +0.6
98,333 + HMPREF1078_RS10935 0.16 -1.1
98,333 + HMPREF1078_RS10935 0.16 +0.9
98,333 + HMPREF1078_RS10935 0.16 +0.5
98,335 + HMPREF1078_RS10935 0.17 -1.4
98,492 + HMPREF1078_RS10935 0.32 +0.9
98,492 + HMPREF1078_RS10935 0.32 -0.6
98,493 - HMPREF1078_RS10935 0.32 -1.0
98,494 + HMPREF1078_RS10935 0.32 -0.1
98,494 + HMPREF1078_RS10935 0.32 +1.5
98,494 + HMPREF1078_RS10935 0.32 +0.0
98,494 + HMPREF1078_RS10935 0.32 -0.5
98,495 - HMPREF1078_RS10935 0.32 -0.3
98,518 + HMPREF1078_RS10935 0.34 +1.5
98,549 + HMPREF1078_RS10935 0.37 +0.7
98,552 - HMPREF1078_RS10935 0.37 -0.3
98,552 - HMPREF1078_RS10935 0.37 +0.5
98,580 - HMPREF1078_RS10935 0.40 -0.7
98,627 - HMPREF1078_RS10935 0.45 +0.2
98,780 + HMPREF1078_RS10935 0.59 -0.5
98,800 - HMPREF1078_RS10935 0.61 -0.0
98,801 + HMPREF1078_RS10935 0.61 -1.2
98,836 - HMPREF1078_RS10935 0.65 -0.3
98,836 - HMPREF1078_RS10935 0.65 +0.1
98,938 + HMPREF1078_RS10935 0.75 -0.1
98,938 + HMPREF1078_RS10935 0.75 -0.6
98,938 + HMPREF1078_RS10935 0.75 -0.3
98,938 + HMPREF1078_RS10935 0.75 -0.2
98,938 + HMPREF1078_RS10935 0.75 -0.4
98,939 - HMPREF1078_RS10935 0.75 -0.5
98,939 - HMPREF1078_RS10935 0.75 +1.3
99,008 + HMPREF1078_RS10935 0.81 +2.9
99,008 + HMPREF1078_RS10935 0.81 +1.0
99,008 + HMPREF1078_RS10935 0.81 +0.4
99,009 - HMPREF1078_RS10935 0.82 -1.0
99,009 - HMPREF1078_RS10935 0.82 -0.5
99,071 + HMPREF1078_RS10935 0.87 -0.9
99,071 + HMPREF1078_RS10935 0.87 +1.2
99,112 + -1.1
99,137 - +0.2
99,182 + +0.1
99,191 - -0.2
99,208 - HMPREF1078_RS19900 0.16 -3.3
99,332 - -2.6
99,367 + +0.1
99,367 + +0.0
99,368 - -0.3
99,369 + -0.4
99,370 - +0.2
99,370 - -1.0
99,370 - +0.3
99,374 + -1.8
99,427 + -0.9
99,427 + +0.7
99,427 + +0.0
99,427 + -0.3
99,428 - -0.2
99,429 + -1.3
99,430 - -0.0
99,431 + +0.1
99,431 + +0.1
99,431 + -0.5
99,431 + +0.7
99,431 + +0.3
99,431 + +0.8
99,431 + -0.6
99,432 - -0.3
99,610 + HMPREF1078_RS19905 0.32 -0.4
99,610 + HMPREF1078_RS19905 0.32 +0.3
99,629 + HMPREF1078_RS19905 0.38 +1.0
99,651 - HMPREF1078_RS19905 0.45 +4.2
99,681 + HMPREF1078_RS19905 0.54 -0.4
99,682 - HMPREF1078_RS19905 0.55 -0.2
99,682 - HMPREF1078_RS19905 0.55 +0.5
99,693 - HMPREF1078_RS19905 0.58 +1.0
99,823 - +0.9
99,827 - +0.5
99,863 + +0.6
99,929 + +0.8
100,018 + HMPREF1078_RS10945 0.11 -1.6
100,018 + HMPREF1078_RS10945 0.11 -2.5
100,019 - HMPREF1078_RS10945 0.11 +0.2
100,021 + HMPREF1078_RS10945 0.11 -0.3
100,107 + HMPREF1078_RS10945 0.19 +0.1
100,111 + HMPREF1078_RS10945 0.19 -0.9
100,112 - HMPREF1078_RS10945 0.19 -0.0
100,112 - HMPREF1078_RS10945 0.19 -0.5
100,147 + HMPREF1078_RS10945 0.22 +0.6
100,147 + HMPREF1078_RS10945 0.22 -2.3
100,148 - HMPREF1078_RS10945 0.22 -1.3
100,148 - HMPREF1078_RS10945 0.22 -0.6
100,205 + HMPREF1078_RS10945 0.27 +0.3
100,300 + HMPREF1078_RS10945 0.35 +0.8
100,301 - HMPREF1078_RS10945 0.35 -0.0
100,319 + HMPREF1078_RS10945 0.36 +0.2
100,319 + HMPREF1078_RS10945 0.36 -0.7
100,320 - HMPREF1078_RS10945 0.36 -0.1
100,321 + HMPREF1078_RS10945 0.37 -0.2

Or see this region's nucleotide sequence