Experiment: marine_broth_2216 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS03440 and HMPREF1078_RS19495 are separated by 81 nucleotides HMPREF1078_RS19495 and HMPREF1078_RS19730 are separated by 9 nucleotides HMPREF1078_RS19730 and HMPREF1078_RS19735 overlap by 62 nucleotides HMPREF1078_RS19735 and HMPREF1078_RS03450 are separated by 134 nucleotides
HMPREF1078_RS03440: HMPREF1078_RS03440 - Sua5/YciO/YrdC/YwlC family protein, at 811,195 to 813,063
_RS03440
HMPREF1078_RS19495: HMPREF1078_RS19495 - hydrogenase formation protein HypD, at 813,145 to 813,327
_RS19495
HMPREF1078_RS19730: HMPREF1078_RS19730 - hypothetical protein, at 813,337 to 813,573
_RS19730
HMPREF1078_RS19735: HMPREF1078_RS19735 - AIR synthase-related protein, at 813,512 to 813,793
_RS19735
HMPREF1078_RS03450: HMPREF1078_RS03450 - thioredoxin-like domain-containing protein, at 813,928 to 814,428
_RS03450
Position (kb) 813
814 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 812.370 kb on - strand, within HMPREF1078_RS03440 at 812.378 kb on - strand, within HMPREF1078_RS03440 at 812.444 kb on + strand, within HMPREF1078_RS03440 at 812.444 kb on + strand, within HMPREF1078_RS03440 at 812.463 kb on + strand, within HMPREF1078_RS03440 at 812.467 kb on - strand, within HMPREF1078_RS03440 at 812.467 kb on - strand, within HMPREF1078_RS03440 at 812.467 kb on - strand, within HMPREF1078_RS03440 at 812.468 kb on + strand, within HMPREF1078_RS03440 at 812.469 kb on - strand, within HMPREF1078_RS03440 at 812.478 kb on - strand, within HMPREF1078_RS03440 at 812.542 kb on + strand, within HMPREF1078_RS03440 at 812.543 kb on - strand, within HMPREF1078_RS03440 at 812.544 kb on + strand, within HMPREF1078_RS03440 at 812.547 kb on - strand, within HMPREF1078_RS03440 at 812.607 kb on - strand, within HMPREF1078_RS03440 at 812.666 kb on + strand, within HMPREF1078_RS03440 at 812.667 kb on - strand, within HMPREF1078_RS03440 at 812.701 kb on + strand, within HMPREF1078_RS03440 at 812.776 kb on - strand, within HMPREF1078_RS03440 at 812.787 kb on + strand, within HMPREF1078_RS03440 at 812.788 kb on - strand, within HMPREF1078_RS03440 at 812.789 kb on + strand, within HMPREF1078_RS03440 at 812.790 kb on - strand, within HMPREF1078_RS03440 at 812.790 kb on - strand, within HMPREF1078_RS03440 at 812.790 kb on - strand, within HMPREF1078_RS03440 at 812.806 kb on + strand, within HMPREF1078_RS03440 at 812.830 kb on - strand, within HMPREF1078_RS03440 at 812.830 kb on - strand, within HMPREF1078_RS03440 at 812.833 kb on + strand, within HMPREF1078_RS03440 at 812.833 kb on + strand, within HMPREF1078_RS03440 at 812.833 kb on + strand, within HMPREF1078_RS03440 at 812.863 kb on + strand, within HMPREF1078_RS03440 at 812.864 kb on - strand, within HMPREF1078_RS03440 at 812.980 kb on - strand at 813.066 kb on - strand at 813.106 kb on + strand at 813.106 kb on + strand at 813.107 kb on - strand at 813.107 kb on - strand at 813.138 kb on + strand at 813.201 kb on + strand, within HMPREF1078_RS19495 at 813.311 kb on - strand at 813.314 kb on - strand at 813.314 kb on - strand at 813.314 kb on - strand at 813.314 kb on - strand at 813.314 kb on - strand at 813.315 kb on + strand at 813.315 kb on + strand at 813.315 kb on + strand at 813.315 kb on + strand at 813.316 kb on - strand at 813.316 kb on - strand at 813.316 kb on - strand at 813.318 kb on - strand at 813.319 kb on + strand at 813.320 kb on - strand at 813.325 kb on + strand at 813.326 kb on - strand at 813.329 kb on + strand at 813.329 kb on + strand at 813.333 kb on + strand at 813.336 kb on + strand at 813.336 kb on + strand at 813.342 kb on - strand at 813.387 kb on - strand, within HMPREF1078_RS19730 at 813.428 kb on + strand, within HMPREF1078_RS19730 at 813.565 kb on - strand at 813.694 kb on + strand, within HMPREF1078_RS19735 at 813.694 kb on + strand, within HMPREF1078_RS19735 at 813.695 kb on - strand, within HMPREF1078_RS19735 at 813.695 kb on - strand, within HMPREF1078_RS19735 at 813.695 kb on - strand, within HMPREF1078_RS19735 at 813.710 kb on + strand, within HMPREF1078_RS19735 at 813.737 kb on + strand, within HMPREF1078_RS19735 at 813.789 kb on + strand at 813.790 kb on - strand at 813.790 kb on - strand at 813.790 kb on - strand at 813.821 kb on - strand at 813.832 kb on + strand at 813.833 kb on - strand at 813.837 kb on - strand at 813.837 kb on - strand at 813.837 kb on - strand at 813.839 kb on + strand at 813.840 kb on - strand at 813.862 kb on + strand at 813.863 kb on - strand at 813.863 kb on - strand at 813.865 kb on + strand at 813.865 kb on + strand at 813.866 kb on - strand at 813.866 kb on - strand at 813.866 kb on - strand at 813.866 kb on - strand at 813.868 kb on - strand at 813.870 kb on + strand at 813.915 kb on - strand at 813.967 kb on + strand at 813.981 kb on + strand, within HMPREF1078_RS03450 at 813.983 kb on - strand, within HMPREF1078_RS03450 at 813.984 kb on + strand, within HMPREF1078_RS03450 at 813.985 kb on - strand, within HMPREF1078_RS03450 at 814.011 kb on + strand, within HMPREF1078_RS03450 at 814.012 kb on - strand, within HMPREF1078_RS03450 at 814.032 kb on + strand, within HMPREF1078_RS03450 at 814.034 kb on + strand, within HMPREF1078_RS03450 at 814.035 kb on - strand, within HMPREF1078_RS03450 at 814.035 kb on - strand, within HMPREF1078_RS03450 at 814.086 kb on + strand, within HMPREF1078_RS03450 at 814.086 kb on + strand, within HMPREF1078_RS03450 at 814.086 kb on + strand, within HMPREF1078_RS03450 at 814.087 kb on - strand, within HMPREF1078_RS03450 at 814.087 kb on - strand, within HMPREF1078_RS03450 at 814.120 kb on - strand, within HMPREF1078_RS03450 at 814.142 kb on - strand, within HMPREF1078_RS03450 at 814.154 kb on + strand, within HMPREF1078_RS03450 at 814.155 kb on - strand, within HMPREF1078_RS03450 at 814.155 kb on - strand, within HMPREF1078_RS03450 at 814.155 kb on - strand, within HMPREF1078_RS03450 at 814.155 kb on - strand, within HMPREF1078_RS03450 at 814.155 kb on - strand, within HMPREF1078_RS03450 at 814.209 kb on + strand, within HMPREF1078_RS03450 at 814.232 kb on + strand, within HMPREF1078_RS03450 at 814.232 kb on + strand, within HMPREF1078_RS03450 at 814.232 kb on + strand, within HMPREF1078_RS03450 at 814.233 kb on - strand, within HMPREF1078_RS03450 at 814.233 kb on - strand, within HMPREF1078_RS03450 at 814.233 kb on - strand, within HMPREF1078_RS03450 at 814.259 kb on + strand, within HMPREF1078_RS03450 at 814.260 kb on - strand, within HMPREF1078_RS03450 at 814.412 kb on + strand at 814.412 kb on + strand at 814.412 kb on + strand at 814.412 kb on + strand at 814.412 kb on + strand at 814.413 kb on - strand at 814.413 kb on - strand at 814.413 kb on - strand at 814.428 kb on + strand at 814.428 kb on + strand at 814.429 kb on - strand at 814.446 kb on - strand at 814.467 kb on + strand at 814.563 kb on + strand at 814.563 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C) remove 812,370 - HMPREF1078_RS03440 0.63 +0.1 812,378 - HMPREF1078_RS03440 0.63 +0.8 812,444 + HMPREF1078_RS03440 0.67 -2.2 812,444 + HMPREF1078_RS03440 0.67 -0.5 812,463 + HMPREF1078_RS03440 0.68 +0.5 812,467 - HMPREF1078_RS03440 0.68 -2.0 812,467 - HMPREF1078_RS03440 0.68 -1.4 812,467 - HMPREF1078_RS03440 0.68 +0.3 812,468 + HMPREF1078_RS03440 0.68 -0.7 812,469 - HMPREF1078_RS03440 0.68 +0.2 812,478 - HMPREF1078_RS03440 0.69 +0.4 812,542 + HMPREF1078_RS03440 0.72 -0.2 812,543 - HMPREF1078_RS03440 0.72 +0.2 812,544 + HMPREF1078_RS03440 0.72 -1.3 812,547 - HMPREF1078_RS03440 0.72 -2.6 812,607 - HMPREF1078_RS03440 0.76 -1.1 812,666 + HMPREF1078_RS03440 0.79 -0.5 812,667 - HMPREF1078_RS03440 0.79 +0.4 812,701 + HMPREF1078_RS03440 0.81 -0.6 812,776 - HMPREF1078_RS03440 0.85 +0.6 812,787 + HMPREF1078_RS03440 0.85 -1.4 812,788 - HMPREF1078_RS03440 0.85 -1.3 812,789 + HMPREF1078_RS03440 0.85 +0.6 812,790 - HMPREF1078_RS03440 0.85 +1.2 812,790 - HMPREF1078_RS03440 0.85 -1.5 812,790 - HMPREF1078_RS03440 0.85 -0.2 812,806 + HMPREF1078_RS03440 0.86 +1.9 812,830 - HMPREF1078_RS03440 0.87 -1.7 812,830 - HMPREF1078_RS03440 0.87 -0.2 812,833 + HMPREF1078_RS03440 0.88 -1.2 812,833 + HMPREF1078_RS03440 0.88 +1.8 812,833 + HMPREF1078_RS03440 0.88 +0.8 812,863 + HMPREF1078_RS03440 0.89 -1.0 812,864 - HMPREF1078_RS03440 0.89 +2.6 812,980 - -1.1 813,066 - -0.1 813,106 + -0.4 813,106 + +0.8 813,107 - +1.4 813,107 - -0.3 813,138 + +0.6 813,201 + HMPREF1078_RS19495 0.31 -0.6 813,311 - +0.7 813,314 - +0.6 813,314 - +0.6 813,314 - -1.5 813,314 - +0.5 813,314 - +0.8 813,315 + -2.5 813,315 + +0.8 813,315 + -0.5 813,315 + +1.1 813,316 - +0.4 813,316 - -0.3 813,316 - +1.1 813,318 - -0.0 813,319 + -0.4 813,320 - +0.2 813,325 + +0.8 813,326 - -0.1 813,329 + -2.2 813,329 + +0.3 813,333 + -0.6 813,336 + +0.8 813,336 + -0.5 813,342 - -0.2 813,387 - HMPREF1078_RS19730 0.21 -0.3 813,428 + HMPREF1078_RS19730 0.38 -2.0 813,565 - +0.5 813,694 + HMPREF1078_RS19735 0.65 -0.5 813,694 + HMPREF1078_RS19735 0.65 +0.0 813,695 - HMPREF1078_RS19735 0.65 -0.8 813,695 - HMPREF1078_RS19735 0.65 -0.3 813,695 - HMPREF1078_RS19735 0.65 +0.4 813,710 + HMPREF1078_RS19735 0.70 -0.8 813,737 + HMPREF1078_RS19735 0.80 +0.8 813,789 + +0.0 813,790 - +0.1 813,790 - -0.2 813,790 - -0.2 813,821 - +0.0 813,832 + -0.5 813,833 - +0.2 813,837 - -1.7 813,837 - -1.1 813,837 - -0.7 813,839 + -1.1 813,840 - -0.5 813,862 + -2.2 813,863 - -0.8 813,863 - +0.7 813,865 + -0.4 813,865 + +0.9 813,866 - -1.1 813,866 - -0.1 813,866 - -0.4 813,866 - +0.9 813,868 - +0.4 813,870 + -0.2 813,915 - +0.4 813,967 + +0.4 813,981 + HMPREF1078_RS03450 0.11 +0.1 813,983 - HMPREF1078_RS03450 0.11 -0.6 813,984 + HMPREF1078_RS03450 0.11 +1.5 813,985 - HMPREF1078_RS03450 0.11 -0.8 814,011 + HMPREF1078_RS03450 0.17 +0.6 814,012 - HMPREF1078_RS03450 0.17 -1.8 814,032 + HMPREF1078_RS03450 0.21 +1.8 814,034 + HMPREF1078_RS03450 0.21 -0.2 814,035 - HMPREF1078_RS03450 0.21 +0.4 814,035 - HMPREF1078_RS03450 0.21 +0.9 814,086 + HMPREF1078_RS03450 0.32 -3.2 814,086 + HMPREF1078_RS03450 0.32 +0.4 814,086 + HMPREF1078_RS03450 0.32 +1.8 814,087 - HMPREF1078_RS03450 0.32 +0.6 814,087 - HMPREF1078_RS03450 0.32 -0.2 814,120 - HMPREF1078_RS03450 0.38 -0.8 814,142 - HMPREF1078_RS03450 0.43 +0.6 814,154 + HMPREF1078_RS03450 0.45 -1.6 814,155 - HMPREF1078_RS03450 0.45 -1.2 814,155 - HMPREF1078_RS03450 0.45 +2.4 814,155 - HMPREF1078_RS03450 0.45 +1.4 814,155 - HMPREF1078_RS03450 0.45 +0.5 814,155 - HMPREF1078_RS03450 0.45 -3.0 814,209 + HMPREF1078_RS03450 0.56 -1.2 814,232 + HMPREF1078_RS03450 0.61 -0.5 814,232 + HMPREF1078_RS03450 0.61 -1.4 814,232 + HMPREF1078_RS03450 0.61 -0.1 814,233 - HMPREF1078_RS03450 0.61 +0.2 814,233 - HMPREF1078_RS03450 0.61 -1.5 814,233 - HMPREF1078_RS03450 0.61 -1.4 814,259 + HMPREF1078_RS03450 0.66 -0.5 814,260 - HMPREF1078_RS03450 0.66 -2.7 814,412 + +0.0 814,412 + +1.7 814,412 + -0.3 814,412 + -0.9 814,412 + -0.4 814,413 - +0.2 814,413 - +0.2 814,413 - +0.2 814,428 + -1.1 814,428 + +0.4 814,429 - -1.7 814,446 - +2.6 814,467 + -0.1 814,563 + +0.6 814,563 + +0.8
Or see this region's nucleotide sequence