Experiment: marine_broth_2216 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS03520 and HMPREF1078_RS03525 are separated by 154 nucleotides HMPREF1078_RS03525 and HMPREF1078_RS19500 are separated by 7 nucleotides HMPREF1078_RS19500 and HMPREF1078_RS19295 overlap by 38 nucleotides HMPREF1078_RS19295 and HMPREF1078_RS03540 are separated by 38 nucleotides
HMPREF1078_RS03520: HMPREF1078_RS03520 - AraC family transcriptional regulator, at 829,045 to 829,941
_RS03520
HMPREF1078_RS03525: HMPREF1078_RS03525 - antibiotic biosynthesis monooxygenase, at 830,096 to 830,590
_RS03525
HMPREF1078_RS19500: HMPREF1078_RS19500 - hypothetical protein, at 830,598 to 831,154
_RS19500
HMPREF1078_RS19295: HMPREF1078_RS19295 - hypothetical protein, at 831,117 to 831,266
_RS19295
HMPREF1078_RS03540: HMPREF1078_RS03540 - DUF3737 family protein, at 831,305 to 832,204
_RS03540
HMPREF1078_RS18385: HMPREF1078_RS18385 - MATE family efflux transporter, at 832,141 to 832,388
_RS18385
Position (kb) 830
831
832 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 829.671 kb on + strand, within HMPREF1078_RS03520 at 829.737 kb on - strand, within HMPREF1078_RS03520 at 829.737 kb on - strand, within HMPREF1078_RS03520 at 829.743 kb on - strand, within HMPREF1078_RS03520 at 829.757 kb on + strand, within HMPREF1078_RS03520 at 829.757 kb on + strand, within HMPREF1078_RS03520 at 829.758 kb on - strand, within HMPREF1078_RS03520 at 829.758 kb on - strand, within HMPREF1078_RS03520 at 829.758 kb on - strand, within HMPREF1078_RS03520 at 829.758 kb on - strand, within HMPREF1078_RS03520 at 829.800 kb on - strand, within HMPREF1078_RS03520 at 829.858 kb on + strand at 829.858 kb on + strand at 829.859 kb on - strand at 829.868 kb on - strand at 829.904 kb on + strand at 829.904 kb on + strand at 829.904 kb on + strand at 829.905 kb on - strand at 829.908 kb on + strand at 829.908 kb on + strand at 829.928 kb on - strand at 829.928 kb on - strand at 829.974 kb on - strand at 829.996 kb on + strand at 829.996 kb on + strand at 829.997 kb on - strand at 830.029 kb on + strand at 830.029 kb on + strand at 830.030 kb on - strand at 830.030 kb on - strand at 830.030 kb on - strand at 830.047 kb on - strand at 830.049 kb on - strand at 830.134 kb on - strand at 830.153 kb on - strand, within HMPREF1078_RS03525 at 830.242 kb on + strand, within HMPREF1078_RS03525 at 830.243 kb on - strand, within HMPREF1078_RS03525 at 830.280 kb on + strand, within HMPREF1078_RS03525 at 830.281 kb on - strand, within HMPREF1078_RS03525 at 830.303 kb on + strand, within HMPREF1078_RS03525 at 830.324 kb on + strand, within HMPREF1078_RS03525 at 830.324 kb on + strand, within HMPREF1078_RS03525 at 830.325 kb on - strand, within HMPREF1078_RS03525 at 830.329 kb on - strand, within HMPREF1078_RS03525 at 830.333 kb on + strand, within HMPREF1078_RS03525 at 830.391 kb on - strand, within HMPREF1078_RS03525 at 830.391 kb on - strand, within HMPREF1078_RS03525 at 830.530 kb on - strand, within HMPREF1078_RS03525 at 830.533 kb on - strand, within HMPREF1078_RS03525 at 830.584 kb on - strand at 830.588 kb on + strand at 830.597 kb on + strand at 830.597 kb on + strand at 830.598 kb on - strand at 830.668 kb on + strand, within HMPREF1078_RS19500 at 830.792 kb on - strand, within HMPREF1078_RS19500 at 830.794 kb on + strand, within HMPREF1078_RS19500 at 830.802 kb on - strand, within HMPREF1078_RS19500 at 830.802 kb on - strand, within HMPREF1078_RS19500 at 830.802 kb on - strand, within HMPREF1078_RS19500 at 830.844 kb on + strand, within HMPREF1078_RS19500 at 830.867 kb on - strand, within HMPREF1078_RS19500 at 830.869 kb on + strand, within HMPREF1078_RS19500 at 830.914 kb on + strand, within HMPREF1078_RS19500 at 831.116 kb on + strand at 831.304 kb on + strand at 831.304 kb on + strand at 831.305 kb on - strand at 831.312 kb on + strand at 831.312 kb on + strand at 831.316 kb on - strand at 831.458 kb on + strand, within HMPREF1078_RS03540 at 831.510 kb on + strand, within HMPREF1078_RS03540 at 831.533 kb on + strand, within HMPREF1078_RS03540 at 831.559 kb on + strand, within HMPREF1078_RS03540 at 831.560 kb on - strand, within HMPREF1078_RS03540 at 831.560 kb on - strand, within HMPREF1078_RS03540 at 831.560 kb on - strand, within HMPREF1078_RS03540 at 831.619 kb on - strand, within HMPREF1078_RS03540 at 831.619 kb on - strand, within HMPREF1078_RS03540 at 831.706 kb on + strand, within HMPREF1078_RS03540 at 831.727 kb on + strand, within HMPREF1078_RS03540 at 831.728 kb on - strand, within HMPREF1078_RS03540 at 831.729 kb on + strand, within HMPREF1078_RS03540 at 831.729 kb on + strand, within HMPREF1078_RS03540 at 831.730 kb on - strand, within HMPREF1078_RS03540 at 831.845 kb on + strand, within HMPREF1078_RS03540 at 831.905 kb on + strand, within HMPREF1078_RS03540 at 831.938 kb on + strand, within HMPREF1078_RS03540 at 832.002 kb on - strand, within HMPREF1078_RS03540
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C) remove 829,671 + HMPREF1078_RS03520 0.70 +0.3 829,737 - HMPREF1078_RS03520 0.77 +0.7 829,737 - HMPREF1078_RS03520 0.77 -0.8 829,743 - HMPREF1078_RS03520 0.78 -0.7 829,757 + HMPREF1078_RS03520 0.79 +0.1 829,757 + HMPREF1078_RS03520 0.79 +0.7 829,758 - HMPREF1078_RS03520 0.79 -0.5 829,758 - HMPREF1078_RS03520 0.79 -0.9 829,758 - HMPREF1078_RS03520 0.79 -2.3 829,758 - HMPREF1078_RS03520 0.79 -1.0 829,800 - HMPREF1078_RS03520 0.84 +0.1 829,858 + -0.0 829,858 + +0.3 829,859 - -1.9 829,868 - -1.4 829,904 + +1.2 829,904 + -0.5 829,904 + +0.5 829,905 - +0.6 829,908 + +0.5 829,908 + +0.2 829,928 - -1.3 829,928 - -1.5 829,974 - -0.7 829,996 + -0.0 829,996 + -0.8 829,997 - -0.9 830,029 + +1.4 830,029 + -0.3 830,030 - -2.8 830,030 - +1.0 830,030 - -0.6 830,047 - -1.4 830,049 - +0.5 830,134 - -1.5 830,153 - HMPREF1078_RS03525 0.12 +0.4 830,242 + HMPREF1078_RS03525 0.29 -0.4 830,243 - HMPREF1078_RS03525 0.30 -0.4 830,280 + HMPREF1078_RS03525 0.37 +0.0 830,281 - HMPREF1078_RS03525 0.37 -0.7 830,303 + HMPREF1078_RS03525 0.42 +0.4 830,324 + HMPREF1078_RS03525 0.46 -0.2 830,324 + HMPREF1078_RS03525 0.46 +0.5 830,325 - HMPREF1078_RS03525 0.46 +1.5 830,329 - HMPREF1078_RS03525 0.47 -0.4 830,333 + HMPREF1078_RS03525 0.48 +1.5 830,391 - HMPREF1078_RS03525 0.60 -0.6 830,391 - HMPREF1078_RS03525 0.60 -0.6 830,530 - HMPREF1078_RS03525 0.88 -1.9 830,533 - HMPREF1078_RS03525 0.88 +0.8 830,584 - +1.8 830,588 + +1.8 830,597 + +1.1 830,597 + -0.1 830,598 - -0.8 830,668 + HMPREF1078_RS19500 0.13 +0.4 830,792 - HMPREF1078_RS19500 0.35 -0.4 830,794 + HMPREF1078_RS19500 0.35 -2.3 830,802 - HMPREF1078_RS19500 0.37 -1.3 830,802 - HMPREF1078_RS19500 0.37 +0.8 830,802 - HMPREF1078_RS19500 0.37 -0.6 830,844 + HMPREF1078_RS19500 0.44 -1.6 830,867 - HMPREF1078_RS19500 0.48 +0.4 830,869 + HMPREF1078_RS19500 0.49 -0.1 830,914 + HMPREF1078_RS19500 0.57 -2.0 831,116 + -0.4 831,304 + +0.9 831,304 + -0.1 831,305 - -0.3 831,312 + -0.9 831,312 + -1.1 831,316 - -1.2 831,458 + HMPREF1078_RS03540 0.17 -1.4 831,510 + HMPREF1078_RS03540 0.23 +0.5 831,533 + HMPREF1078_RS03540 0.25 -2.1 831,559 + HMPREF1078_RS03540 0.28 +1.4 831,560 - HMPREF1078_RS03540 0.28 -0.0 831,560 - HMPREF1078_RS03540 0.28 -0.1 831,560 - HMPREF1078_RS03540 0.28 +1.3 831,619 - HMPREF1078_RS03540 0.35 +1.0 831,619 - HMPREF1078_RS03540 0.35 +0.1 831,706 + HMPREF1078_RS03540 0.45 -2.6 831,727 + HMPREF1078_RS03540 0.47 +0.5 831,728 - HMPREF1078_RS03540 0.47 -0.6 831,729 + HMPREF1078_RS03540 0.47 +0.2 831,729 + HMPREF1078_RS03540 0.47 -0.3 831,730 - HMPREF1078_RS03540 0.47 -1.3 831,845 + HMPREF1078_RS03540 0.60 +0.1 831,905 + HMPREF1078_RS03540 0.67 -2.7 831,938 + HMPREF1078_RS03540 0.70 -0.1 832,002 - HMPREF1078_RS03540 0.77 -0.4
Or see this region's nucleotide sequence